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Target CDS Information

Gene Symbol (Gene ID) Shisa7 (ENSMUSG00000053550)
Cross Reference
EMBL AC162034
GO GO:0003674, GO:0005575, GO:0008150, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Shisa7-001
OTTP OTTMUSP00000033662
OTTT OTTMUST00000067011
UCSC uc009eyu.2
UniParc UPI0001F79026
Uniprot/SPTREMBL F6T9T6
Vega_transcript OTTMUST00000067011, Shisa7-001
Vega_translation 199843, OTTMUSP00000033662
Definition protein_id:ENSMUSP00000112405
translation:
PGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHREINVPRALVDILRHQAGPATRP
DRARSSSLTPGLGGPDSMAPRTPKNLYNTMKPSNLDNLHYNVNSPKHHAATLDWRAMPPP
SPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKRRQLEMP
RGTLPLHALRRPGTGGGYRMDGWGGPEELGLAPAPNPRRVMSQEHLLGDGSRASRYEFTL
PRARLVSQEHLLLSSPEALRQSREHLLSPPRSPALPPDPTTRASLAASHSNLLLGPGGPP
TPLHGLPPSGLHAHHHHALHGSPQPAWMSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHH
LPQHLRTASKNEVTV

Chromosome 7
Length
Position(start - end)
6538
4829635 - 4836174
Orient to Chromosome minus
Link Location : (7:4829635-4836174)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Shisa7 (ENSMUSG00000053550)
Transcript ID ENSMUST00000117452
Reports
substitution
cSNPs5
Insertion14
Deletion19
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num0
synonymous substitutions 4829704 (p.Leu353Leu), 4830073 (p.Gly230Gly), 4830106 (p.Arg219Arg), 4830111 (p.Arg218Arg), 4830112 (p.Pro217Pro),
non-synonymous substitutions
B6 transcript
(ENSMUST00000117452)
PGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHREINVPRALVDILRHQAGPATRP
DRARSSSLTPGLGGPDSMAPRTPKNLYNTMKPSNLDNLHYNVNSPKHHAATLDWRAMPPP
SPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKRRQLEMP
RGTLPLHALRRPGTGGGYRMDGWGGPEELGLAPAPNPRRVMSQEHLLGDGSRASRYEFTL
PRARLVSQEHLLLSSPEALRQSREHLLSPPRSPALPPDPTTRASLAASHSNLLLGPGGPP
TPLHGLPPSGLHAHHHHALHGSPQPAWMSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHH
LPQHLRTASKNEVTV*
MSMv4 transcript
PGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHREINVPRALVDILRHQAGPATRP
DRARSSSLTPGLGGPDSMAPRTPKNLYNTMKPSNLDNLHYNVNSPKHHAATLDWRAMPPP
SPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKRRQLEMP
RGTLPLHALRRPGTGGGYRMDGWGGPEELGLAPAPNPRRVMSQEHLLGDGSRASRYEFTL
PRARLVSQEHLLLSSPEALRQSREHLLSPPRSPALPPDPTTRASLAASHSNLLLGPGGPP
TPLHGLPPSGLHAHHHHALHGSPQPAWMSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHH
LPQHLRTASKNEVTV*
homology100.00 (376 / 376)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Shisa7 (ENSMUSG00000053550)
Transcript ID ENSMUST00000117452
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GGCTGAGCTCTCAACTAATTTTCATTCTCTCTCCTCCCCTTCCCTTTCCT
CTCCTCTCCTCCCCTCCCCTCCCCTCCCCTTCTCTCCTCTCTCCTCTCCTTCCTTCTCCT
CCCTCCCCTACTACCGGGCTGCTCCACACCCCACATCTCTCTTCCCTATCCCTCCTTTCT
TCCCTTCCTCCTCTTTCCCTCCTTCTTGGGCTCCCTGGGTCTTTGGCTGCGGCTCACCCC
CCTCCCACATATCTTCCTCAATTCCCCCCTCTGCCTTCTGCCTTCACACCTTCCTTCTCT
ATCAAGTCCTCCCTTCGTAAAAACTTCTGTATCCCCTCCTCCGTCCCCGCCGATCCTTTC
TTTTCTCCTGCTGAGCCCCTCTCTCGTCGCTCCCTTTGTCCTCCCCTCCCACCGCTGCAA
TTCGGCTCCGGGATCCGCAGCCTGGCGTCCCGGTGTGCACCATGCCGGCCCTGCTGCTGC
TCGGGACCGTCGCGCTGCTAGCCTCCGCAGCGGGCCCGGCGGGGGCGCGCCCATCCAACG
ACACAAGCTCAGTGGCCCCGGGCCCGCTGCCCGCGCTACTCGCGCACCTGCGGCGCTTGA
CCGGGGCTCTGGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCA
GCCCCGCGAGTGGCACGGGCGCAGCGGCACGGGCGCCTCCTCCGGCCGAGCTCTGCCATG
GCTACTACGATGTCATGGGCCAGTACGACGCCACCTTCAACTGCAGCACCGGCTCCTACC
GCTTCTGTTGTGGCACCTGCCACTACCGTTTCTGCTGCGAGCACCGCCACATGCGCCTGG
CGCAGGCCTCCTGCTCCAACTACGACACGCCACGCTGGGCCACCACGCCCCCGCCGCTGG
CTGGAGGCGCCGGGGGCGCTGGGGGTGCGGGTGGGGGACCAGGGCCGGGCCAGGCAGGGT
GGCTGGAAGGGGGCCGGGCCGGGGGCGCTGGGGGACGTGGGGGAGAGGGC
1 EXON 1 4836044 4836174 - 2 131
CCAGGGGGCAGCACAGCCTACGTGGTGTGCGGAGTCATCAGTTTCGCCCTGGCGGTGGGC
GTCGGTGCCAAAGTGGCCTTCAGCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGATC
AACGTGCCCAG
INTRON 1 - 2 4834385 4836043 1659
GTAAGTGTGAATTGGGATTGGAGGG..........CCACCCATCCATCTGCCATTTTTAG
2 EXON 2 4834230 4834384 2 1 155
AGCTCTCGTGGATATTCTCAGGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGGCCAG
AAGCAGTTCTCTGACCCCAGGGCTGGGAGGCCCAGACAGCATGGCCCCAAGGACACCCAA
GAACCTTTACAACACCATGAAGCCCTCCAACCTCG
INTRON 2 - 3 4831724 4834229 2506
GTGAGTGCAAGTGACATGGTGCCTT..........GTCACCTCCCTTCTCGGTCCCTCAG
3 EXON 3 4831673 4831723 1 1 51
ATAACCTGCACTACAACGTCAACAGCCCCAAGCACCACGCCGCCACACTGG
INTRON 3 - 4 4830909 4831672 764
GTACGGCGCCCTGGGAGTCGGGGGT..........CTGACTGGGTCTTCCTCGGCCACAG
4 EXON 4 4830759 4830908 1 1 150
ACTGGCGTGCTATGCCGCCGCCCAGCCCCTCCCTGCACTACTCCACACTATCCTGCTCCC
GATCCTTCCACAACCTCTCTCATCTTCCCCCGTCCTATGAGGCTGCTGTGAAATCAGAAC
TGAATCGATACTCTTCCCTCAAGAGACTGG
INTRON 4 - 5 4830276 4830758 483
GTAAGTAAGCCTGGTGAGGGGACTC..........GATCTTTCTGTCTTTTCTCCCCCAG
5 EXON 5 4825552 4830275 1 - 4724
CTGAGAAAGATCTGGATGAAGCCTACCTGAAGCGCAGACAACTGGAGATGCCGCGCGGAA
CGCTGCCCTTGCATGCACTCCGGCGGCCTGGCACTGGAGGTGGCTACCGTATGGATGGCT
GGGGTGGCCCTGAGGAGCTGGGCCTGGCACCAGCACCCAACCCCAGGCGGGTTATGTCCC
AGGAGCACCTTCTGGGTGATGGCAGCCGAGCTTCCCGCTATGAGTTCACGTTGCCTCGAG
CGCGCCTGGTGTCTCAGGAACACCTGCTGCTGTCCTCACCTGAGGCGCTTCGCCAGAGTC
GCGAGCACCTGCTGTCACCCCCACGAAGTCCTGCACTGCCCCCAGATCCCACCACCCGGG
CCAGCCTGGCTGCCTCACACTCCAACCTGCTGCTAGGGCCTGGGGGCCCCCCCACACCCC
TGCATGGGTTGCCTCCGTCAGGCCTGCATGCCCACCATCACCATGCCCTTCATGGCTCTC
CTCAGCCAGCCTGGATGTCTGATGCGGGCGGGGGTGGGGGCACACTGGCCCGCAGGCCAC
CCTTCCAGCGCCAGGGCACCCTGGAGCAGCTACAGTTCATTCCTGGGCACCACCTGCCCC
AGCACCTGCGCACTGCCAGCAAGAACGAAGTGACTGTCTGAGGCCGGGTGGAGTGCTGGG
GGCTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTATCATA
CACACCAAGGCTCTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGA
TGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTCACTGTTTGAACCAAGGCCTCCCTC
CCATGATGTCATCCCAGAGGAAGGAGGCCTGTACATGAGGTCATTGCTAGCAAATATGTC
TGTGTTTTATGATGTTGTTTGCAGGGACTAAACCTCCTTCCTATGAGGTCACCACAGAGG
AAGAGCCCTGCCTGAGGTCATCACTAGAGGCTATGTCCATTTTGCATGACATCACCACAG
AAACTCCTTTCCTGTGATGTCACTACGACAATGCCTTGTCCCATCCCATCATCCCTAGAA
ACAAAAATTTCTTCCTGCGTGTCACTACAGAGACAAGTCTCACACTTCTTGACACTTGTT
GACATCATCCTGACTGAGCACCAAGGCCTCTTGCAATTATCATCACAGGAAAAATGTTTC
TCTGCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTC
CTGGGACACATCGCAGTGGACTACGCCCTGCCAGTTATGTCCTCACTAACAATTAGGCCT
CCTTTCCACAATACTGTCACAGGACTTTGCCTCCCTCCTGTGATGCCATCACCAGAATAG
GTGCCTTGCCCAATGGCGCCATCACAGGGACTGTGCCTCTTCATGTGATGTCATTACCAG
AAATGACCACCTGTTCTTGGGACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCA
GTTACCACCCACTTGGAAATGACACCAGGAGACACCTCTATTGCTGTGCCATGTCGTGAG
AAAGTTGGGCATGTGTAGCCCAAGGCCACCTGGGAAAAGGCCAGAGAAAGTAACCCGTCC
TGAGATGTCATGAGGGCATCAGCACTAGGGATACTAGGGTTTTTCTATAGGATGCTGGGG
GTGATGCCCTCTATTGCTTGGACATCATCATAGAGTGCTTCCTTCTCAGAGGTGGTCCCC
ACTCTAGATGACCAACAGTAGTGACTGCATAATGATTGTGTCATCAGAGTCCTTAAGTCC
CTATAGCTGAGCTCTGTGCTTCTTTCTTCGCGTGACCCCAGGGGCATAGCCAACAGGATG
TCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGGATGCAGTGAA
CCCTGGGAACGGCACCCATGGATGAGCTTCAGCTCCACAGCCACTCTGATCCACAGGGCT
GCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTCTTTCTGCCATATC
TAAAGACATCAGCTCTCAACACAGTCCCCATCTCTATTGGAGGGGAAGGGTTAGGGTATA
TGTGCTGTTGACCTTGCCAATGACATCATCAATGTCACCCAGTGTCCTCCTTTCATGATG
GCATAGCAGTTGGGGTCCAATGTTAACTGTGTCATTTCCCAGAATTCCATGACTCACCTC
AATTACCATATCAACTTCCAGGCATTATCACCATTAATGGCGTCATCATTGCCTCCCAAG
ATCCCTTCCAACCATGGTGTCATCATTTCCCAGGGTCCAAACAACACATCGTCATGATGT
CCCAGGATCCACTATGTCCTCATTGCTTCCCAGAATCCTTCACAACATGCTCACCTCATC
ACCTCCCAGCATCCATCACAGCCAGGGGGCCTTCATCTCCCAGCAATCACAACCACACAG
TCCTCACCATCTCCCAGATGGTGAGATCCATCAGAACCACACTGTCCTCATCTCTCAGGA
CTTGTTAGGACTGATAGAGCCAGAGTCTCTCGTGACTCCATATAATTGCAGTGTCACCTC
CCAGGACCCACTTTAGCCATGTCTTCATGTCTCAGTAGCCATCATAGCTATGATGTCACC
ACTTCATAAAATCCACTCCAACTGTGGTGTCCCTGGATTCTTGTGACCATGTATCATCAC
ATCCCAGTATCCATCTAAAAGTGTCACAAGTATCATATACAATGAGCATCCATAAGGACC
ATCATTCTGTCACCTCCCTAGACACATCAGTCATGTCCTATCACGACTCATCAGGATTTA
CTGTAACTGTGGTGCCATCACCTCCAAGCAGCCATAATAGCCAACAGTGTCTTCATTCCC
CAAGACCTACTTCAACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTC
ATCACCTCCCTGGACCCATGACAACAATAATGTTATCATTTCCAGAGTGTACTTCAGCGA
TGGTGCCATCGTCCTCTCCCAGAATCCATGTAAAACCATGTGTCCTCATCTTCCAGGACC
CGTGGCAATTGTGTGCCATCTACCAGGACCCATCATCTTAGGGTCCAAATGTTGTGACAG
GCTATATTTCAGTTGTCCTCTGGGGTCTCATGGCATTTACAGTTCCTCCCTTTAGGGGAA
CCAGCACAACAGGCCATTTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCC
TCTGATAATGTCACCCCACTCTGTCCCTTCTTAATGTGTCACTGCCTCATTCCTGATCCG
AATAGATACCTGGATCAGCTTCACCTACAGACTTGGCCTTGGCAAGCCTCCTTCCACTCA
CTGGTGAGTGCATCTTAACTCTTCTTGGATTACCACTGTCCCTTGCCCAGCCATCTGATC
GGTGACAGGGTCATCTTGGTGACCTCTCCACAGCAGCAGCAGAGGGGGAGCTTCCCAGCC
CTTAGATGGCATCACTGCCCTAACCCACTCCATTTCTAGTACTTGGTCCCAACCAGGATC
AGAACTTGCTGGCTTGGGCCATGCTCTGTCTAGAGAGGATGTAGGAGATGCCACAGCTGA
TAAACCACCCGCTGGCCTATTCCTAGAGTATGTATATCTGAGAGCAATGGCCCCTGCTAC
CTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTCCCTAATATACCAGGGAGTGA
GTACCCAGGGGCTTCAGGGAGTCCCTGACACCCAGTGCACAATCTTTTCCTGCCACACCC
AGTTCTCTGTACATATAGCCATGTTTCAGGGGGGCGGCCATTCCCCACTCTTAAAGGGCT
ACATGCCCCCCTCCCAGCCCCTATGGCAAGGAGAGGGGCTCTTCTCCCTCCTCTGGGCCG
CCCTCTCCCTCTTATGTCTCCCTCCCCCCACCAAATATTGGCCCCTGTGGCCATCCCTTC
TTGCCCAGAGCCTGGATGGGATAGATGGTAACAGGCTCTCACCATGCTGAGGAAAGTAGG
GAGTTACCACCAATCTTCCTAAATGCCAGCACCAGGTTTTCGGCCTCCCAACTAATAGAT
GCTCCATGGGCTCCGCATCCATTCTAGGGCCTCCCTTCAAGTGTGCTTAACACTCCCATG
GAACACACAGCTTTCTCCAAGCCCTGGAGAGGTTCAGGGGCTTTCAGCTTTTGTTTGCCC
ACTCTCTCTTTCCCTTCATCCCTCCCCAAACCTGAATTCCTTCCTTCCTGGGATCTGCCC
TCACCCCAGCCTCCACCCTCCACCTGCCTGACCCTGAAGTCTTGACCTCTTATTTCAATA
AAGCCATAGTGGGGAAAGGTCTTGAGGGTGGGCCAGCAGGCCCTGTTCTGCTCATCCCCC
ACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGAGTCTTCCCCTCCCCACC
CCCACCCCTGCTCCCCAATAAACACAAATACACATAGGCAGGGTGTGCCCATGCAGGAAA
GCTCCCTTCTGGCTGGGGGCTGCAGAGGGGGTGTCAGAGACAAGATCAAAGTGCCACACC
AGAGGTTCCTCAGGCCTCTGAACCCCATTCTTACTCCCCTCCCCACACTTCCTTCCAGTG
CTGGACTCACCTTCATCTTCCTGGTGAGGACAGCAAAAGGAGCAGGCACTTGGCTGGGGG
TGGGGTGTTGGTTTTTGTTTTGGAATAAACAGCTGTTTTCCTGA
3' upstream sequence
TCTTCAGCCTCAAGGTTTTCTTCTCACCTGTTCACTTGTAAATCGGGCACCTCCCCTCTC
TGTGTAGTGGAGTAACACTGGCCAAGGGCATACAAACGTTTGTCAGGGGAGGAACTTCTA
AAACTGTTTCCCCGAAGGCTCAGCGTGATCCCTAAAGCTGAGGAGTCAGGGAAGGGACAT
TTTAATGTAATTTTTAATTCTTGGTTGTTTTCTTCTTAAATTTTTATTTACATGTTTTTT
TTAAGATTTATTTATTGTTATATCTAAGTACACTGTAGCTGTCTTCAGATGCGCCAGAAG
AGGACATCAGATCTCATTACGGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAAC
TCAGGACCTTCGGAGGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCATAT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTCTTAGTTAAGGTTT
CCATTGCTGTAAGGAGACACCGTGATCAAGGCAACCCTTATAAAGGACAGCACACACACA
TACACATACACATACATACATGAGGGTTTGCCTGAATGGATGTCTGAGTGCCACATGTCT
GCCTAGCACAGGAGGAAGGCATCGGATCCTCTAGAACTGGAGTTATAGACAGGTGTGAGC
CGCCATGTGGGTGCTTAGTATCAAACTTGGTCCTCTTCAAGATCAACTACTGCTCTTAAC
AACTCCACCTCTCCAACTCCTTTAATTTGTAATATTATATTTATCTACTTGTGTGTTCCT
GTGTGTGCAGCAGTAAGAATTGGAAGGAGGGCCTCATGAATGTTAAATGGGTATTATACC
AGTGAGCTATATTTCCAGCCCCCCTTTCCAACCAAGCCTACACAGAGAAACCCTGTCTGG
AAAAAGCAAAAATAAATAGATAAATAAAAATATCTTTTTTTTTTAATTTTGAGCCAGGCA
TTCACTAAGTTGCCCAGGTTGGCTTTGAACTTGCTCTTCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Shisa7 (ENSMUSG00000053550)
Transcript ID ENSMUST00000117452
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 376 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information