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Target CDS Information

Gene Symbol (Gene ID) Cgnl1 (ENSMUSG00000032232)
Cross Reference
EMBL AC093483, AC107662
GO GO:0003674, GO:0003774, GO:0005923, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Cgnl1-003
OTTP OTTMUSP00000041722
OTTT OTTMUST00000078476
UCSC uc009qpc.2, uc012gwn.2
UniParc UPI000173A714
Uniprot/SPTREMBL D3Z3H4
Vega_transcript Cgnl1-003, OTTMUST00000078476
Vega_translation 205707, OTTMUSP00000041722
Definition protein_id:ENSMUSP00000113917
translation:
MELYFGEYQHVQQEYGVHLRLASGDTPKPRNSQPSKAGSYGVSIRVQGIDGHPYIVLNNT
ERCLAGTPFPENAPSFPSSVINNLSLHPSNGTVLKENTPEELQLPENPYLQTSPLRGQKQ
FSLHEGRNGVLERKDGPTKLPHVLNFQRHPELLQPYDPEKNEVNAKKHHPPESPWLRNAT
EDGTNCKKSRNCFPKSYGSQPNSPTSEDLAKTNMTAIRLCSSVVIEDPQKQTSVCVNVQR
CAKEGVGEETLSPRRKSPTAPSPQAYSETKKNRPDVLPFRRQDSAGPILDGARSRRSSSS
STTPTSATSLYKFLLDDQECAIHADSVNRHENRRYIPFLPGTGRDIDTCSIPGVDQLIEK
FDQKPGLQRRGRSGKRNRINPDDRKRSRSVDSAFPFGLQGNTEYLTEFSRNLGKSSEHLL
RPSQVFPQRSVAQEHRGKHSPSSPPAKLQGAQGAHPKPPLQNKDGKVLNKGRQESTGACA
PSLPAPNKKEEEIKIATATLMLQNRAVAATSDSGAKKISVKTFPSDSSTQATPDLLKGQQ
ELTQQTNEETAKQILYNYLKEGGTDNEDATKRKVNLVFEKIQTLKSRAAGSAQGSNQAPN
SPSEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEE
TATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDRE
KGALIENVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDV
KGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQ
KELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQL
GEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKR
QLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSR
EQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARI
AELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQV
EEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLRLKTLSSKVLDDSDDDDL
SSDAGSLYEAPLSYAFPKDSTIASQI

Chromosome 9
Length
Position(start - end)
96806
71629260 - 71726067
Orient to Chromosome minus
Link Location : (9:71629260-71726067)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cgnl1 (ENSMUSG00000032232)
Transcript ID ENSMUST00000121322
Reports
substitution
cSNPs23
Insertion109
Deletion127
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num17
non-synonymous num6
synonymous substitutions 71630541 (p.Leu1161Leu), 71630595 (p.Ala1143Ala), 71630601 (p.Glu1141Glu), 71641386 (p.Ser1013Ser), 71645603 (p.Glu955Glu), 71650333 (p.Gly901Gly), 71651306 (p.Leu857Leu), 71655320 (p.Ala821Ala), 71655344 (p.Lys813Lys), 71656055 (p.Arg792Arg), 71656145 (p.Arg762Arg), 71715353 (p.Ser716Ser), 71723581 (p.Thr546Thr), 71724925 (p.Pro381Pro), 71725498 (p.Arg190Arg), 71725798 (p.Asn90Asn), 71725819 (p.Asn83Asn),
non-synonymous substitutions 71630497 (p.Asn1176Ser), 71630529 (p.Met1165Ile), 71723628 (p.Ala531Thr), 71724486 (p.Ser528Gly), 71724689 (p.Leu460Gln), 71725262 (p.Thr269Ser),
B6 transcript
(ENSMUST00000121322)
MELYFGEYQHVQQEYGVHLRLASGDTPKPRNSQPSKAGSYGVSIRVQGIDGHPYIVLNNT
ERCLAGTPFPENAPSFPSSVINNLSLHPSNGTVLKENTPEELQLPENPYLQTSPLRGQKQ
FSLHEGRNGVLERKDGPTKLPHVLNFQRHPELLQPYDPEKNEVNAKKHHPPESPWLRNAT
EDGTNCKKSRNCFPKSYGSQPNSPTSEDLAKTNMTAIRLCSSVVIEDPQKQTSVCVNVQR
CAKEGVGEETLSPRRKSPTAPSPQAYSETKKNRPDVLPFRRQDSAGPILDGARSRRSSSS
STTPTSATSLYKFLLDDQECAIHADSVNRHENRRYIPFLPGTGRDIDTCSIPGVDQLIEK
FDQKPGLQRRGRSGKRNRINPDDRKRSRSVDSAFPFGLQGNTEYLTEFSRNLGKSSEHLL
RPSQVFPQRSVAQEHRGKHSPSSPPAKLQGAQGAHPKPPLQNKDGKVLNKGRQESTGACA
PSLPAPNKKEEEIKIATATLMLQNRAVAATSDSGAKKISVKTFPSDSSTQATPDLLKGQQ
ELTQQTNEETAKQILYNYLKEGGTDNEDATKRKVNLVFEKIQTLKSRAAGSAQGSNQAPN
SPSEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEE
TATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDRE
KGALIENVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDV
KGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQ
KELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQL
GEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKR
QLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSR
EQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARI
AELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQV
EEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLRLKTLSSKVLDDSDDDDL
SSDAGSLYEAPLSYAFPKDSTIASQI*
MSMv4 transcript
MELYFGEYQHVQQEYGVHLRLASGDTPKPRNSQPSKAGSYGVSIRVQGIDGHPYIVLNNT
ERCLAGTPFPENAPSFPSSVINNLSLHPSNGTVLKENTPEELQLPENPYLQTSPLRGQKQ
FSLHEGRNGVLERKDGPTKLPHVLNFQRHPELLQPYDPEKNEVNAKKHHPPESPWLRNAT
EDGTNCKKSRNCFPKSYGSQPNSPTSEDLAKTNMTAIRLCSSVVIEDPQKQTSVCVNVQR
CAKEGVGEETLSPRRKSPTAPSPQAYSESKKNRPDVLPFRRQDSAGPILDGARSRRSSSS
STTPTSATSLYKFLLDDQECAIHADSVNRHENRRYIPFLPGTGRDIDTCSIPGVDQLIEK
FDQKPGLQRRGRSGKRNRINPDDRKRSRSVDSAFPFGLQGNTEYLTEFSRNLGKSSEHLL
RPSQVFPQRSVAQEHRGKHSPSSPPAKLQGAQGAHPKPPQQNKDGKVLNKGRQESTGACA
PSLPAPNKKEEEIKIATATLMLQNRAVAATSDSGAKKISVKTFPSDSGTQTTPDLLKGQQ
ELTQQTNEETAKQILYNYLKEGGTDNEDATKRKVNLVFEKIQTLKSRAAGSAQGSNQAPN
SPSEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEE
TATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDRE
KGALIENVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDV
KGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQ
KELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQL
GEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKR
QLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSR
EQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARI
AELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQV
EEAEEEIDRLESSKKKLQRELEEQIGVNEQLQGQLSSLKKGLRLKTLSSKVLDDSDDDDL
SSDAGSLYEAPLSYAFPKDSTIASQI*
homology99.51 (1227 / 1227)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cgnl1 (ENSMUSG00000032232)
Transcript ID ENSMUST00000121322
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CACTTGAAAATATTTTTTTTTCAAGTTTTGCCTGCATGTATACCTGTGCG
CCACATATATGCAGTACCCGAGGAGACCAGAAGATGGCACTAGATCCTCCTGGCACTGAA
GTTAACAAAGGTTTTGGGAGCTGTCTTGATGGTGCTGGGAATTGAACCAGATCTTATAGA
ACAGAAACAGATCTTAACTGCTGAGCCATTTCTCCAGCTCTGTAAATAAATACAAGCACG
TTTCATCACTGTGCAAGTTTTCTTCTATTGCTGTTGCAGTTTTCCTACAAAATAATCACT
ATTACTTTTTGAAATCTTTTCACGTTACTGTTTTGAGTGACTGAATTTTTGAGTGTTGAT
TTTATTCAACATGTTTGTCAGTAAACATTTACTTATTAAAATACTGTAAGACACATGCCA
TTTCTGCAGTCCTTTCTTCAGGAATAACAAGCCGTTGAGTGAGTGCCTCGCTCACTTTAC
AATGGAGGAAACTGAACTTGGAAATGACACCCTGGCCTTCCCAGTTGGCAATGTAATGCC
ACCTTCCCTGGAAAACTAACTAAACTAGGGCCTGAGAGTTTGTCTCTAATGTCTGTGCTG
CTACCAGGAGCCAGGTGACCTCAGAGCTAGGCCCAGCTTTAGCTTATAGACGTCACTTTG
TCACTTCGTGCCTTTTGTGATTTGCTTCTAGGTGACAGAACAAGGCTGAGTGGAAGAATG
GGGGGAAACTGAGATCTGGGGTGGGATTGCGGAATAGGGAAAGTTTCCTGGAGGAGGGGT
TGTAAGGGGGTGCTGAGAGAGAGAAGAGAGTGGCTGCGGGTGGGAACGGGGTGCTGGTAT
GGGCGCAGGGAGGTCTCAGGGCGCAGATGGGGCAGGGTTTCAGGGATCGCCCGGGACTGT
CCGCGAGGGGCCGCAGTCCTCGGTCCGCCGGGTCCTGGGTCGCTGGGAGGGTCCGGACGC
AGACCCGCCTGCTCCTCCTCCCGGGAGGGCGGGCGACTGCAGGGCGGGGC
1 EXON 1 71771509 71771602 - - 94
GGGGCTGGCGCGGCCTCCTGGCGACGCGGCGGCCGCTGCTCTCCGGCCCGGCTCTGCGGG
CAGCTGCCGGAGCGGGACCCTGGAGGCAGAGGCG
INTRON 1 - 2 71726083 71771508 45426
GTAAGTGAGCTCCGAGCGGGAGCCC..........GTAATGTCCTCTTTCCTCCTGCCAG
2 EXON 2 71724478 71726082 - 0 1605
CTGGGACAGAGAACCATGGAGCTGTATTTTGGCGAATACCAACACGTACAGCAGGAGTAC
GGGGTACACCTGAGACTTGCCAGTGGTGACACTCCAAAGCCAAGGAATTCCCAGCCCTCA
AAGGCAGGCTCCTATGGTGTCAGCATCAGGGTCCAGGGAATTGATGGCCACCCTTATATA
GTCCTGAATAACACTGAGCGGTGTCTAGCAGGCACACCTTTCCCAGAAAACGCGCCATCG
TTTCCATCTTCAGTGATAAATAATCTGTCCCTACATCCAAGCAACGGAACCGTGTTGAAG
GAGAACACTCCGGAGGAACTGCAGCTTCCAGAAAACCCGTACCTGCAAACCAGCCCGCTA
AGAGGCCAGAAGCAGTTCTCCCTCCACGAGGGCAGGAATGGAGTTCTAGAACGCAAAGAC
GGGCCCACGAAGCTGCCCCATGTGCTCAACTTCCAGAGGCACCCGGAGCTTCTGCAGCCC
TATGACCCAGAAAAGAATGAGGTGAACGCAAAGAAGCATCACCCTCCCGAGAGTCCCTGG
CTGAGAAATGCAACAGAGGACGGGACCAACTGTAAGAAGTCCCGAAACTGCTTCCCCAAA
TCCTACGGTTCCCAGCCCAACAGCCCTACTTCGGAAGATTTAGCCAAGACCAACATGACA
GCGATCCGTCTCTGCAGCTCTGTGGTCATAGAAGACCCCCAAAAGCAGACCTCAGTGTGC
GTGAACGTTCAGAGGTGCGCCAAGGAGGGGGTGGGAGAGGAGACCCTTTCCCCTCGACGG
AAATCCCCAACTGCCCCCAGCCCACAGGCCTATTCTGAAAGCAAGAAAAACAGGCCAGAT
GTGCTACCCTTCCGGCGACAAGATTCCGCAGGACCCATCCTGGATGGAGCTCGGTCACGC
AGGTCCTCTTCGTCATCCACGACTCCTACTTCTGCCACTTCCTTGTACAAATTTTTACTT
GATGATCAGGAATGCGCCATTCATGCCGACAGCGTCAACCGCCATGAAAACAGAAGGTAT
ATTCCCTTCTTGCCAGGAACTGGGCGGGATATCGACACCTGCTCAATTCCTGGTGTGGAC
CAGTTAATTGAAAAATTTGACCAAAAGCCTGGCCTTCAGAGAAGAGGAAGGTCTGGGAAG
AGAAACAGGATCAATCCGGACGACAGGAAAAGATCCCGAAGTGTAGATAGTGCCTTTCCA
TTTGGTCTCCAGGGAAACACAGAATACCTCACCGAGTTCAGCAGGAACCTGGGCAAGTCT
AGCGAACACCTCCTTCGGCCATCCCAGGTCTTCCCGCAGAGGTCAGTGGCCCAGGAGCAC
CGTGGGAAGCACAGTCCCAGCAGCCCGCCCGCAAAGCTGCAGGGCGCTCAAGGTGCCCAC
CCCAAGCCTCCCCAGCAGAACAAAGATGGGAAAGTTCTGAACAAAGGAAGGCAGGAAAGC
ACGGGGGCATGTGCCCCCTCCCTGCCAGCACCGAATAAAAAAGAGGAAGAAATCAAAATA
GCCACTGCCACGTTGATGTTACAGAACCGGGCGGTGGCTGCCACATCGGATTCTGGTGCC
AAGAAAATTTCAGTGAAGACATTTCCTTCCGACTCCGGCACTCAG
INTRON 2 - 3 71723629 71724477 849
GTAATTCTTGTGGTTTTTCCTTTTC..........AATAACATACTTTATTATGTTCCAG
3 EXON 3 71723534 71723628 0 2 95
ACCACACCAGATCTCTTAAAGGGCCAGCAGGAGCTCACACAACAAACCAACGAGGAGACC
GCCAAGCAGATCCTTTACAATTACCTCAAAGAAGG
INTRON 3 - 4 71721702 71723533 1832
GTGGGTGGCTTTCCTCAAAGAGCAA..........CGTCCTCTCTGCTGCTGTTCCACAG
4 EXON 4 71721596 71721701 2 0 106
AGGCACAGACAATGAGGATGCCACCAAAAGGAAAGTGAACCTGGTCTTTGAGAAAATCCA
GACTTTGAAGTCCAGAGCAGCAGGGAGTGCCCAAGGAAGCAATCAA
INTRON 4 - 5 71717498 71721595 4098
GTAAGTCATAGTTTTTGTACTTTGC..........AGGATATCTTTGCAATTAATTGTAG
5 EXON 5 71717396 71717497 0 0 102
GCTCCGAATTCTCCCTCTGAAGGCAACAGTCTATTGGATCAGAAGAACAAATTGATCCTA
GAAGTGTCTGAACTACAGCAGCAACTGCAACTGGAGATGAAG
INTRON 5 - 6 71716557 71717395 839
GTAGCTGGCTTTTATATTTTTTCCC..........TTAAAATCACTCTGACTCCTGTTAG
6 EXON 6 71716408 71716556 0 2 149
AACCAACAGAACATCAAGGAGGAGCGAGAAAGAATGAGAGAGGATTTAGAAGAGCTGCGA
GTCCGGCACCAGAGCCAAGTGGAGGAGACGGCCACCCTGCAGAGACGGCTGGAGGAAAGT
GAAGGCGAGCTGAGGAAGAGCTTGGAAGA
INTRON 6 - 7 71715459 71716407 949
GTGAGTGTCCGGCTGGAGCCCTGCC..........CAGACCTCCTGTTGTCCCCTGCCAG
7 EXON 7 71715323 71715458 2 0 136
GCTGTTCCAAGTGAAGATGGAGCGTGAACAGCACCAGACTGAGATCAGAGACCTGCAGGA
CCAGCTGTCGGAAATGCATGATGAGCTAGACAGCACCAAGCGATCTGAGGACAGGGAGAA
GGGAGCCCTGATTGAG
INTRON 7 - 8 71656253 71715322 59070
GTAAGGGAACTGTGGGCCAGGTGTC..........AGCACTTTGTTCTCCTTGTTCGCAG
8 EXON 8 71656046 71656252 0 0 207
AATGTTGAGGTCCTGGCCAGCAGGAGCAACTCCTCAGAGCAGAGCCAGGCGGAGGCTGAC
CTGCGTGAGAAAGTGCTGAAGGAGGAGAATGAGAAGCTGCAGGGGAGAATTGCGGAGCTG
GAGCGCAGGGCAGCCCAGCTACAGAGGCAGATGGAGGATGTGAAGGGTGACGAGGCCCAA
GCAAAGGAGACACTCCGGAAGTGTGAG
INTRON 8 - 9 71655398 71656045 648
GTAAGAGGGCCTTGGCTGGGGTTTG..........TTTTGACCTATCTGTTTCATTGTAG
9 EXON 9 71655293 71655397 0 0 105
AGTGAAGTACAGCAGCTGGAGGAAGCCCTTGTGCATGCCAGAAAGGAAGAAAAGGAAGCC
ACATGTGCCAGAAGGGCACTGGAGAAGGAGCTGGAGCAAGCTCGG
INTRON 9 - 10 71651387 71655292 3906
GTAAGCCCCAGCTTTCCCTTCCTCA..........CACTGCTGAGTTTTTCCATCCGCAG
10 EXON 10 71651234 71651386 0 0 153
AGAGAGCTGAGCCAGGTCTCCCAGGAGCAGAAGGAACTCCTGGAGAAACTCCGGGACGAG
GCGGAGCAGAAGGAGCAGCTTCGAAAGCTGAAGAACGAGATGGAGAGCGAGCGGTGGCAC
CTGGACAAGACCATCGAGAAGCTGCAGAAGGAG
INTRON 10 - 11 71650393 71651233 841
GTGAGAGGGCAGGCGGCCGAGCAAA..........CCTCATACCACGCTGCTTCCTCTAG
11 EXON 11 71650222 71650392 0 0 171
ATGGCCGACATTGCTGAGGCCTCCCGCACATCCTCTTTGGAGCTGCAGAAGCAGCTGGGT
GAGTATAAGGAGAAGAACCGCCGGGAGCTTGCGGAAATGCAGACACAACTGAAGGAGAAA
TGCCTGGAAGTGGAAAAGGCCAGACTGGCAGCCTCGAAGATGCAGGATGAG
INTRON 11 - 12 71645654 71650221 4568
GTAACGCCTACCTGCCGGGAAATCC..........ACCTTCACACACGCTCTCCTTCTAG
12 EXON 12 71645492 71645653 0 0 162
TTACGCCTCAAGGAGGAAGAGTTGCAGGACTACCAGCGAGCTGAGGAGGAAGCGCTCACA
AAACGGCAGCTTCTGGAGCAGTCGCTGAAGGACCTGGAGTATGAGCTGGAGGCCAAGAGC
CACCTCAAGGATGACCGCAGCCGACTCATCAAGCAGATGGAG
INTRON 12 - 13 71641449 71645491 4043
GTGTGTGGGTACCCGGGCTGGAGCC..........AACGGTTCCTGTTTTCCTTTCTCAG
13 EXON 13 71641359 71641448 0 0 90
GACAAGGTGTCCCAATTGGAGATTGAATTGGAAGAAGAAAGAACCAACGCTGACTTGCTG
TCAGAGAGGATCACGTGGAGCAGGGAACAG
INTRON 13 - 14 71632682 71641358 8677
GTACGAGGGGGTGGTCAGAGGTTGA..........GCCCCTTTTGCTCTGCTTGTTGTAG
14 EXON 14 71632598 71632681 0 0 84
ATGGAGCAGATGAGGAGCGAGCTTCTTCAGGAGAAAGCTGCCAAGCAAGACTTAGAGTGT
GACAAGATTTCCCTAGAGAGACAG
INTRON 14 - 15 71631856 71632597 742
GTGAGGACAGCCAGTTCCCTGAGTT..........TCAAAGGCTCCCTCTCTGATTCCAG
15 EXON 15 71631731 71631855 0 2 125
AACAAAGACTTAAAGAGCCGGATTATCCACCTGGAAGGTTCCTACAGGTCCAGCAAGGAG
GGCCTGGTGGTGCAGATGGAGGCCAGGATTGCAGAGCTGGAGGACCGGCTGGAGAATGAG
GAGAG
INTRON 15 - 16 71630971 71631730 760
GTAGGCCCAGCCTGGAGTGCTCTGG..........TCTGTGCTGCTTTCTCTACTCCCAG
16 EXON 16 71630862 71630970 2 0 109
GGATCGGGCCAACCTGCAGCTCAGCAACCGAAGGCTGGAGCGGAAGGTGAAGGAGCTGGT
GATGCAGGTGGATGATGAGCATCTGTCACTGACGGACCAGAAGGACCAG
INTRON 16 - 17 71630640 71630861 222
GTGAGAGCGCCTCTGCCTTCTCTCT..........TCAAGCTCCATCTTTCCTCCGGCAG
17 EXON 17 71630476 71630639 0 2 164
CTGAGCTTGCGCCTGAAAGCCATGAAGCGCCAGGTGGAAGAGGCCGAAGAGGAGATCGAC
CGACTGGAAAGTTCTAAGAAGAAGCTGCAGAGGGAGCTAGAGGAGCAGATAGGGGTGAAT
GAGCAGCTGCAGGGGCAGCTCAGCTCTCTGAAGAAGGGCTTAAG
INTRON 17 - 18 71629393 71630475 1083
GTGGGTAGAGGTGGTGGCCCACTGA..........GAACATCTCCTTTGTGTTTCCACAG
18 EXON 18 71626509 71629392 2 - 2884
GCTTAAGACACTGTCTAGTAAAGTACTGGACGACTCGGACGACGACGACCTCAGCAGTGA
TGCGGGAAGCCTCTACGAAGCCCCACTGAGCTATGCCTTTCCCAAAGACAGCACTATCGC
CAGCCAGATCTGAGTCTGCTTCCAGGCCCGTTGATCCTGACAGGACTCTGCAGTCATCTA
GACAGAGCAGGAGGCACTAAATAGGGCTTGTGAATGGAGTCAGACCCACGGTTACCACCT
CACATTCCTCCTGGGGCCTCTGCGTGGTTGAGTGACCTTGGATCTTAGATAGGGAGCTAT
TGAAGTTTCAGATGACCTAACTGGGACATTTGGGGGTAAGACAAAGCCCCATTGTGCACT
GCTGTCTGCCATCACTCCTTCTCCTGCCCCGGAGAAGGTTCCAGTGCCAGCTGTAATGAT
ATAGGGACACATAGGGATGAAATGATGTATAGACTGAACCAGACCTTCTCAAGGACCGCT
GTTCTCCTAAAGGATGCTCCAGAGCCTTTCGAGTATGACATCTTTGTAAAGTTCACAAAC
TGATCTTGATTATCTTTTAAAATATGAAGCTACCAGATCTCAAGTATTAAGAAGCTGGAG
GCAAAGGAGGGAGAGTGAAGGCTATTCTGGAAACCAGAGGGGGTCAGACAGTGGGAATCA
ATAATTGGTTTGTATGGGAAACCAGTTCATTGATGGTTGGGGAAGGACACTTAGGTGGAG
TCTGAGGCCTTGGTTGCTTATTTTATCTGAACCATGCAAAGAGCAGTCCCTACTCCCCAC
TGCTTTCAAGCAAGCAGAATGGGAGACAGATGAGATTTTTAACAAGTGCTGTGCTTCCTA
AAGGACAAGAGCGCTGTTGTTGTGTCTCCTTGGCCCTTTTCCTCCATGGCAGACCTCCAA
GCGAAGCTCGCTCAGGCCTGGAATTGGAGGAACAGGAGGGGCCTTGAGACGAGGCCTATG
GGCTTAGGTATGAGGGTAAGGAGGGAGGCATCCAGGAAGTTCATGGGGCAGGGGATGAGT
GGGTGGGTATGGGGCTGATGTAAGAAGGAATACAGAGACGTTCTTGAAAGCTGGGGGATG
TGCAAGAAGGGCAGGGGGTGGGGGTTGAGCTGGAGTTTGGAATGATGGGAAAAGGGATTG
GGAGTGCTTGCCATCTGAAGGGCTGTTTTGGGGAACAGGTATCAGGAAGGGATGAGGTCC
AAGGGCAAGCACATGATGCCAAGGTAGTTTTGGGAGAATGCTGGGCATCCCTGCATATCT
CCTGGCCTACCCATGTCTCCTCATGACTGTGACAGTCACCTATGAAAGAGCCTTGTGAGT
TACCTATGTGTAAGGCAGAGGTGACAGGACACTGGAGCAGAGTCCTCAGGCTTCCTGATA
TGGGGACTCCTGGGGACCAGGTTACCATAAGGTCCTGTCCACAGCAGGTCAGAGTTCACA
CAGCTAGATTCAGAGAAGGGATCTGAAGGATGAGCATCTGCTGCCAGAGAACCAAGCCCT
ATTACACATCCCGAGATCCACTGTCTCCCTCGCCTGTCTCCTCACTGGGTATGGAGAGAC
TTCTGCTTTCAGCCATTCTTCCATGTAACAAGCATGTACTATCATCCATCAAAATGTGTC
AGGCACAGACTTGGGCACTGGAAACACAGTAAATAGAAGTAAAAATGTTGAGCCGGAAAT
GCAGCTCAGCTGGGGCAATGCGTGCCTAGCGTGCAGGAAGCCCTGTATTTAACCCCCAAC
TCTATAAACCGGGTGTGGTGTGGTATGCCTGTGATCCCAACACAGGAAGTGGCAGCAGGA
GGATCCAGAGTTCAAAGTCAGCCTTGGATACATATGCAGGTCTTGGCCAAGCTGGGTTAT
ATAGGAGGCCCCGTCTCAAAAAAACCCAACCAACCCTGCCCTCCTGTAACCATCCAGCAG
AGTGTGGTGCAGCCTGAACCTCTCTATACTCAGCCTCGGAGAACCTCTGTCCTCTTGGGA
ATGTGATGGCCTGCGATTGGTTGGCTGGTTCCCCAGAACACACAGGAATTCTTTAGCTCC
TAGAATCTTCTCATGTCATCATTCGATATTTGTACTCAGCCTAGAAATGTCTCAGCCTGC
TCATCCCAGAGATTCAGGTGACAAAAATCAAGACCCCGAGGAAGGGTGTTTGTTTTGGGG
TTTGACAAAAATTAGCCAGCCCTTATTCCAGTCAGTTCCTTCTGGTAGCCATGGGGCTAA
CTATATGAAGGAAGATAGCTCGTGGAAGGGAGAGCAGAGGCCACCACTGGAAACATTTGT
AGAGTCCCTCACCCCACCACACACACACACACCAGAGGAGGCTAAACGAGATGAGGGCAT
GTCTCCTGTGCTGTAATGGAGTGGGCAGCGAGCCGGTGTGTGCAGTATAGTCAGCGAGTG
ACGCGACACTGGAATGAGGTTTAGAACGAGGTTTGTAAGTCCCAGCCTCATCTCTTCCCT
GTGATCCTGACAGGTGCATCCTGGGACAAGGTGGAGATTAGGACTCCAGGTCCTTCTCAG
CTCGAATCTGTTGAGCATCCCTTGGTCTTCTTATATATACATGTTTTTCTGTTTATTCCT
TTAAGAACTAATCCTGCTCAAGAGCATTTTCTTTAGCTAGCTTAAAAATATCTCCTGTAA
AAACATACATGTTGCCAAGTGCAATGTTGAGAAGACAATCACTGTATGGCTTTTATAAAT
TTGTTTTTCCTGCTCTGGAGTGTCATTCCACCATGACAGTTGGAATATTCTGGTGGGTCT
TTTAGTAGGGATTGGTTACTATGTGTTGTCATGGGGAAGAGACATTTTTTATCACAGCTA
CCTCCATGGGAATGACTTCATGGATAAAGCAAGGTTTCCTTTCAATAAACTGTCACTTGA
CAGG
3' upstream sequence
AATCCTGGCTCTTGTATTATTTTCTATCTTTTGATTTCTGTCCAGTTTGGATGCTGTGTT
ACTGTGCAAGCATAAGGACCCATTCAATTCCCAGAACCCACATCCAAGAGGCAAGTGTAG
TGGCCCGCTCCTGTAATTCCTGGGGAGGTGGAGACAGGGATTTGGGGAGCTTGGTGGCCC
GCCAGTTATGTGGAATTAGTGAGGTCCAAGCAAAAAGAAAGCGCCAATGTATATGCTGGG
AGCTACAAGGGTTGCCCAGGGCCACTCTGAGAGACTATGGGGTGGTGAGCAGTGAATGCT
GATGAAATGTTAGCCATGGCCTTGATGTGCTGAGTCCCAGCTGGTTCATTCCAAAATCAC
AAAGGGAAGTTACTCCAGCTTGACAACTGAGAATCAGATCCCCGTTTCCTAAGGTTGGCT
GCCTCCCCTGCAAGCACAGTTGTGTGCTCTGTCGCTCTCCTAACAGGCTCCCTACAGTCG
CCATTTCCCATGGAGCTGGGGCCACTTCTCCCTAGACCACCGTGTCCCCTCTGTTCTCCA
CTTCAGGGAGCTGATCTCCACACCCCAGCTTCCAGAGATGACTGGTTTGACCTGAGTGCA
CGTGGAATCTGGGCATTTCTCTTGGGTGCAGCAATCTTGGGTGTGCTCCCTGGGACTTGG
GGAGCCCACATATTGGTAGCCATGGCTCTCCAGATCCCTCAGAGTCCTTCCTGAATTTTC
TACCACTGCTTGCATTAAGTCACATCTGGTCCCATTTCCTGTCCCCTCCATGTATGTAAG
CATGCCGCCCCCCCCCCCGCCCCCCCAGCAAACTACCAGACTGATGTAGGTCTCTTCTCA
GGATCCCCTGGCCGGGGGTGATATTCTGTGTGGCTCCTGGTCCTGAGCTGTCAGGAGGAA
CAGGCTCAGGAAGCCCAGAGTGAAGGGAGGAAAAAAAAAAGCCAAAACAACAAAACCCCA
AACCCAAGTCCTCCCCAGGACTTGCCTTCCCATCACATTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Cgnl1 (ENSMUSG00000032232)
Transcript ID ENSMUST00000121322
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1227 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information