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Target CDS Information

Gene Symbol (Gene ID) Adtrp (ENSMUSG00000058022)
Cross Reference
CCDS CCDS49250.1
EMBL AC165263, AK029025, AK135327, ...show all
Fantom 4732482L07, 6720480B08
GO GO:0003674, GO:0005575, GO:0005886, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Adtrp-001
OTTP OTTMUSP00000038376
OTTT OTTMUST00000073998
protein_id AAH27755.1, BAC26250.1, BAE22490.1
UCSC uc007qfi.1
UniParc UPI00000282D6
Uniprot/SWISSPROT Q8C138
Vega_transcript Adtrp-001, OTTMUST00000073998
Vega_translation 214386, OTTMUSP00000038376
Definition protein_id:ENSMUSP00000113661
translation:
MTKTTTCVYHFLVLNWYIFLNYHIPQIGRNEEKLREFHDGGRSKYLTLLNLLLQAIFFGV
ACLDDVLKRVIGRKDIKFVTSFRDLLFTTMAFPISTFVFLVFWTLFHYDRSLVYPKGLDD
FFPAWVNHAMHTSIFPFSLFETILRPHNYPSKKLGLTLLGAFNFAYIIRILWRYVQTGNW
VYPVFDSLSPLGIIIFFSAAYILVAGIYLFGEKINHWKWGAIAKPQMKKN

Chromosome 13
Length
Position(start - end)
63536
41764758 - 41828295
Orient to Chromosome minus
Link Location : (13:41764758-41828295)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Adtrp (ENSMUSG00000058022)
Transcript ID ENSMUST00000121404
Reports
substitution
cSNPs2
Insertion61
Deletion67
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 41767418 (p.Gly192Gly), 41828215 (p.Ile27Ile),
non-synonymous substitutions
B6 transcript
(ENSMUST00000121404)
MTKTTTCVYHFLVLNWYIFLNYHIPQIGRNEEKLREFHDGGRSKYLTLLNLLLQAIFFGV
ACLDDVLKRVIGRKDIKFVTSFRDLLFTTMAFPISTFVFLVFWTLFHYDRSLVYPKGLDD
FFPAWVNHAMHTSIFPFSLFETILRPHNYPSKKLGLTLLGAFNFAYIIRILWRYVQTGNW
VYPVFDSLSPLGIIIFFSAAYILVAGIYLFGEKINHWKWGAIAKPQMKKN*
MSMv4 transcript
MTKTTTCVYHFLVLNWYIFLNYHIPQIGRNEEKLREFHDGGRSKYLTLLNLLLQAIFFGV
ACLDDVLKRVIGRKDIKFVTSFRDLLFTTMAFPISTFVFLVFWTLFHYDRSLVYPKGLDD
FFPAWVNHAMHTSIFPFSLFETILRPHNYPSKKLGLTLLGAFNFAYIIRILWRYVQTGNW
VYPVFDSLSPLGIIIFFSAAYILVAGIYLFGEKINHWKWGAIAKPQMKKN*
homology100.00 (231 / 231)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Adtrp (ENSMUSG00000058022)
Transcript ID ENSMUST00000121404
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GAGCATTGGTGTGCGAAGGTGTCAGCTTTTAAGCTCATGCTTGCTCATTT
GCATTATTGGTGTCATTTTTTTATCATGCCAGTGGAGCCCATGACTCGGGGCTTTGCTGC
CTATAGCAGCAGAGTAAGGATCTAAACCTAGTTCTGACTGATTTGCCAACTCGACCAGTC
CATCCAGAGTTTGTTCAGTGTTGTTCTTGGGCACTAAAGTACCTTCATGTGCTGTGAAGC
ATTTCTGCTCATAGGAAGGAGGGTCAGAAGAGGGTTCAGGTCTCGGGAGCCATCCACACT
CCAACCTTGGCAGCTTTGCTGTGATTTCTTTGTATGTGTGGATAGGATGCTGGATTTTGT
TTGAGAGACAATAGAAGATAATGGTGCTTTTTAAAAAAGCATTTGGAAAAAAAATGACAA
TATGACAATGGACTCATGTGATTTTGTGGAACAAATTCCAAAGGCCTTGTAACTTCTCGT
TAAGCAGAGGTTTCAAATAAAGGACACTCAGTTCTAAGCTTAGAGACCGAAAGGTAGGAT
TTATTCACACTCACACCTACACACGTGCTCTCGTGTGGTCAGACATTCCTGTGCCCTATC
TTGATCCCCCAATTAATGACCGTTTCTGGTCCAGGACAGTGGCAGCCTTAGAAGGAGTTG
CCTCTAAACGCCTATTCACTAAAAGAAAAAAAAAAAAAAAAAGTGGCCACACCCACATTT
CCCAGCAGTCCTAGCTGCCACATCATCAGTCAGCAATGCTGTCTGCTCACCTTTGAAAGA
AGCAGCCAAGCAACTCTCTAAACCAGGGCTGCCCATCTCTTGCTTTGCCTTTCCATTAGC
GAAATGAGTTCCCACCAGCCCCTGAGGGAGGCCTTGGCCTTTCATCATTCCTAGTCATGA
GGCTGAAATCCACCAAGAGCCATCCCAAGGAACCCCGGCAAGGTCAAGCCAGGTCTTAAG
AGAAATAGCTTGCACGTGAGAGTGTCTCCTCCCTGCTTGGCCTCGGGCCA
1 EXON 1 41847491 41847684 - - 194
GGACAGAGAGGGTTGGGTGAGTTCAGGGGAGGGGCCCCTTGATCATCCACTCCCACCGAA
CACTTCTTATCTTTCAGACAGAGCGTGTCTTAGTAAGGTGGCGATCTGGGCCAGGAAATT
TTTCTGGCCACTAGAAATCTGGCTTGATCTCAAGCTCCCTGCGTTTTCCTTGGTAGAAGA
CCCAGGTAGCTAAG
INTRON 1 - 2 41828386 41847490 19105
GTGAGTTCTCCGTGTCAGCGCCACG..........TGCCCAGAGGGCTTTGTTTCTACAG
2 EXON 2 41828143 41828385 - 0 243
CTTTCCAGCCTGAACAGAGGGCAGCTGGGACACCCAGGACTCAGAGTGAACACAGAGCGG
GTGCCACTGTCGCTCCGATCCAGGGAAGCCATGACGAAAACAACCACTTGCGTGTACCAC
TTCCTTGTTCTGAACTGGTACATTTTCCTCAATTATCACATCCCACAGATCGGAAGGAAT
GAGGAGAAGCTAAGGGAATTCCATGACGGTGGGCGATCCAAGTACTTGACACTCCTTAAT
CTG
INTRON 2 - 3 41816273 41828142 11870
GTAAGTCGGTTTATCCACGTCTGGA..........TGCTCATTTATTGTAATGAATTTAG
3 EXON 3 41816138 41816272 0 0 135
CTCTTGCAGGCCATTTTCTTTGGGGTCGCCTGCCTGGATGATGTGCTGAAAAGAGTCATC
GGAAGGAAAGACATCAAGTTTGTCACATCCTTCAGAGATCTGCTCTTTACCACAATGGCT
TTTCCTATATCCACA
INTRON 3 - 4 41814317 41816137 1821
GTAAGTACCCAAATTGTATGTCCAG..........TAGTATTTTTGTGTTTCCTTTCCAG
4 EXON 4 41814215 41814316 0 0 102
TTTGTGTTCTTGGTATTCTGGACTCTCTTTCACTACGACCGGAGCCTCGTTTACCCCAAG
GGCTTGGATGACTTCTTCCCAGCATGGGTTAACCACGCAATG
INTRON 4 - 5 41777624 41814214 36591
GTGAGTGGGAGAAAATTAATGAACA..........CAGATTGTCATATTTCCTTCTACAG
5 EXON 5 41777508 41777623 0 2 116
CATACCTCCATATTTCCCTTTTCACTGTTTGAAACCATCCTCAGACCACACAACTATCCA
TCGAAGAAGCTAGGACTCACCTTGCTGGGTGCTTTTAATTTTGCCTACATCATCAG
INTRON 5 - 6 41767488 41777507 10020
GTAAGAACGGCATAGAATGGGTCAA..........TCATCTTGACTTCTTGTTCCCGCAG
6 EXON 6 41767336 41767487 2 1 152
GATCCTGTGGCGCTACGTTCAGACTGGAAACTGGGTGTACCCCGTGTTTGACTCCCTCAG
CCCACTGGGCATTATCATCTTCTTCTCAGCCGCTTACATCCTAGTCGCCGGCATCTACCT
GTTTGGCGAGAAGATCAATCACTGGAAATGGG
INTRON 6 - 7 41764793 41767335 2543
GTCAGTGCTTCTTTCTCATCTGCAG..........GGTGTCTCTGTGTCTGTCTGTCCAG
7 EXON 7 41764133 41764792 1 - 660
GTGCCATAGCAAAGCCACAGATGAAGAAGAATTGATGACGTACTATTTTCCAAGAGCCAT
GGAAGAAGAAACTTAAGAACCAGTCATCTTTCTATTATCCTCATTATTATTATTATTATT
TCTTTTTGGATCAGGGGTGGACTTGCTTGGGGAGATAGAAAGGACGGAGAATGTTGCATA
GTTTTAATAAAGGATATAAAGGGAGCTTCTCTTGGGATCTCCTGGTTTTCTAAAAGGCTG
ACATCTCCTGTTACTTTTGATTGACCTCCACATTTTGTTTCTGACCAAAAAGGCTCAACA
AGCTTGTCTAAACTTGTTGCTGGACCATTTAGAGAATGGGTGTGGGGACAAGAACATGGG
GGCATAAACTCTCTTTACCTTCTAGGGGTATGGGGAAGACACAGATGACATGCTCCAAAC
GTCAAAATCATGACCAAGCTGGAGTAGTGGTGCACACAGGGCATTCCCTGCATTCTGGAG
GCTAAATCAGGAAGATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCA
TTAGAAGACCAAAAATAATAATTTAAAAGTAGTTGTTGCTGGGTGGGTAGGGGATTGGGG
GGAGGGTATGGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATACCTAATT
3' upstream sequence
AAAAAAAAGTTTAAGAAACACTAAAAAAAAAAAAAAGAAAAAGTAGTTGTCGAAATGAAG
ACAGTGCCGGCTTCTTCTAGATCTCCCAATACCAAATACTGGGCCATTTTTCAATAATCC
CCACTTCTCTTTAAAAAAAAAAGTACGTATTTTTAATAAGCTAATTGTTTTCAGTGATTT
CTGACCTATTTTTCCCTTGATTTAGAAGTGTACAGAAATATAACCTAGCGGCAGCTAACT
TTATAATAACAACTAATAAAAAAAATGGCAGCAAACTCGCTGGGGCAGTGAGAATAATTT
ATAACAAGTGGTGGGAAGTCTACCCCTCTTCAGAGCAAACATTTGGGGTGGGAGTTACCA
ATTAATGTGGAACGTAAGGGGCTGTCAAATGGCTCTTCCATTTGGATACTGGTTTGAAGG
GAGGCACAGATGAGTTATTGGGAAGTCAGTGTGTATACCATATGCAAGCAGGACTTTAGC
TGGGACAAAGGCTAACTGAGGGAGCCAAGGGTGCTTCTATACAAGCTCCTCAACTGATCA
GGTGACTCACAAGAGCTCATGAGCCCTTTCCTTTCTCTGGGGGCTTTTAAGTCCAGCTTT
GTCACTGCTGTATATTTGTTTTACACAGAACAGGGTCTTGTAAAAATAATTCATGTGTTT
TAACCATATTTGCCTCCCAAGACCATCACCTCCCCACCCTTGCCCAACTCCTGCTCCTCC
TACCAGCTTCCCTTCTGATTTCATCTTCCCCCACCTCTCAGACACATACACACAGACAGA
CATGCAGACACACACACATGGAACATGTACATGCATGGGTCCATGTATCTGTAATATAAT
CTAAGATCTACATATGAGAAAAAAATAAACATTTGTATTTCTAAGTTTGGCTTATTTCCC
TTAATTTGATGGTCTCTGCGTACCTCCATTGTCCAGCAAAGGATGTAATTTCATTCTTTA
TGAGTAAATAAAACCGCATTTCTATAAAGATTTTTTTTTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Adtrp (ENSMUSG00000058022)
Transcript ID ENSMUST00000121404
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 231 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information