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Target CDS Information

Gene Symbol (Gene ID) Sgce (ENSMUSG00000004631)
Cross Reference
GO GO:0005887, GO:0016010, GO:0016012
goslim_goa GO:0005575, GO:0005623, GO:0005886, ...show all
MGI_trans_name Sgce-011
OTTP OTTMUSP00000073199
OTTT OTTMUST00000139523
UCSC uc009avp.2
Uniprot/SPTREMBL F6WKE4
Vega_transcript OTTMUST00000139523, Sgce-011
Vega_translation 196472, OTTMUSP00000073199
Definition protein_id:ENSMUSP00000120718
translation:
MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTGEVSNDPITFNTNLMGYPDRPGWL
RYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQ
AEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEG
VYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQ
VSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCC
RREGVEKRDMQTPDIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPT
HTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTGKWYP

Chromosome 6
Length
Position(start - end)
72471
4674616 - 4747088
Orient to Chromosome minus
Link Location : (6:4674616-4747088)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Sgce (ENSMUSG00000004631)
Transcript ID ENSMUST00000126151
Reports
substitution
cSNPs4
Insertion43
Deletion72
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num1
synonymous substitutions 4689647 (p.Gly354Gly), 4689668 (p.Pro347Pro), 4707118 (p.Asp165Asp),
non-synonymous substitutions 4689630 (p.Thr360Met),
B6 transcript
(ENSMUST00000126151)
MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTGEVSNDPITFNTNLMGYPDRPGWL
RYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQ
AEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEG
VYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQ
VSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCC
RREGVEKRDMQTPDIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPT
HTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTGKWYP*
MSMv4 transcript
MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTGEVSNDPITFNTNLMGYPDRPGWL
RYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQ
AEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEG
VYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQ
VSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCC
RREGVEKRDMQTPDIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPM
HTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTGKWYP*
homology99.75 (397 / 397)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Sgce (ENSMUSG00000004631)
Transcript ID ENSMUST00000126151
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCCATCAGTTCGTAGCGTGTGAAGTGCCTATGAGTATTTTGTAGCGCATG
AAGCGCCTATGAGTATTTTGTAGCGTGTGAAGTGCCTATGAGTATTTTGTAGCGCATGAA
GCGCCTATGAGTATTTTGTAGCGCATGAAGCGCCTATGAGTATTTTGTAGCGCATGAAGC
GCCCGTTAGTTTATCACAGCGCAAGACGCGGCCGTCTGCAGTGCAATCCGTTCGTAGCGC
GGCACTTAAGAGTGCAGAGCCAGTCACTTTGCAGCGTATTTGGGGAGCTCATCACAATTC
GGTCAGTAGCTCATGTGCGTCTGCAGCTCATCGCTGTCCGCAGCTCATGTGTCTACCGAC
CATTTCTGGACGCGAGTCGTGGAAACCGAATTCGCGGACCCGAAGCCGTGAAGACTTGCT
TTCCACGCTCTCGTCTCAGGATCTGGCCACTGAAGGCTTGACAAAATTTGCGAGGAGATA
TTTTGGGGGGCGCTACTTTTATCTCCCGCAGCTCCCGATGTAAAACGGGGATTGCGTGTG
ACCGTTTTCTTGGAGTTAAAAAAAAAAAAAAAATCCTAACCATACTCACCACACGAGGAT
TCCTCTGCGATGCCACGAAGGATGAGGGGTCCCGCGACGGCCCGGTCCACTGGGTGACCG
CGGTCCGGAGAAGGCTCCGGACCGCAGCCCGCGCAGCAGACCTAGGCGAGGCTCGGTGGA
CCTTCTCGGTTGGCTGCTCTCCCCAGGTCGTAGTTGGTCAGGATTCTTCGACACACACCA
ACTCAAGTTGGAAACGCGTGTATCGGGAGTCCGGACTGCTTGCCTTATATAGAGAGATCC
TAGGAGGGGGGGCGCCAAATCCCAGCGTGCTTCGCGAGCAGCGGGGGCGGAGGGGGGCGC
GTGGGCGGGCGCCTTGGGGGATGGGGTGGGGGCGCGGCATGCACTGCTTTGGCCCGCCGC
TAGGGGCAGCATGGGCTCAGGAAGGGGGGGTGCGCGATGCTGAACTGGCC
1 EXON 1 4746980 4747157 - 1 178
AAGCTGGGAGGAAAAAAAGAAAGGGAGGGGAGGGGAGGATCGAGGACGGTTGGCTTAGGC
AGGCCAAGAATGCTATTATTCTGGTGGTGGGAGCTGGGAGACCCTTGTGCTTGGACGGGA
AAGGGTCGGGGGACACTCAAGATGAGCCCCGCGACCACTGGCACATTCTTACTGACAG
INTRON 1 - 2 4718079 4746979 28901
GTTAGTGGCCTGCGCGCGACATGGA..........TCTTAATTCTGTGTTTCTTATCTAG
2 EXON 2 4717921 4718078 1 0 158
GGGAGGTTAGTAATGATCCCATAACATTTAACACAAATTTAATGGGCTACCCAGATAGAC
CTGGATGGCTTCGATATATCCAAAGGACCCCGTACAGTGATGGAGTCCTGTATGGGTCTC
CAACAGCTGAAAATGTGGGGAAACCAACTATTATTGAG
INTRON 2 - 3 4711381 4717920 6540
GTAAGTTATTTTGAACAAGTGACAT..........AAACATGCCTTTTCTTTTCTAATAG
3 EXON 3 4711308 4711380 0 1 73
ATAACTGCCTACAATAGACGTACCTTTGAGACTGCAAGGCATAACTTGATAATTAATATA
ATGTCAGCAGAAG
INTRON 3 - 4 4707273 4711307 4035
GTAAGTATGGAAAGTATGTTGGTAA..........GCATATCTCTTTTCATCAACACTAG
4 EXON 4 4707074 4707272 1 2 199
AATTCCCGTTGCCATATCAAGCAGAATTCTTCATCAAAAATATGAATGTGGAAGAAATGT
TGGCCAGCGAGGTTCTTGGAGACTTTCTCGGGGCTGTAAAAAATGTGTGGCAGCCAGAGC
GCCTCAACGCCATAAACATCACGTCAGCCCTGGACAGGGGTGGCAGAGTGCCGCTTCCTA
TTAATGACATGAAGGAGGG
INTRON 4 - 5 4694185 4707073 12889
GTAAGACAGCCTTCATCTCGCGCCT..........ACTTGAGAGTTTCATATTTTTGCAG
5 EXON 5 4694022 4694184 2 0 163
TGTTTATGTCATGGTTGGTGCCGATGTTGCATTTTCTTCTTGTTTACGAGAAGTTGAAAA
TCCACAGAATCAGTTAAGATGCAGTCAAGAAATGGAGCCTGTGATAACATGCGACAAAAA
GTTCCGAACTCACTTTCATATCGACTGGTGCAAGATTTCACTG
INTRON 5 - 6 4691641 4694021 2381
GTGAGTTTTTTGTTTGGTTGGTTTT..........TGTGCAATTTTCTTTTTTATATCAG
6 EXON 6 4691429 4691640 0 2 212
GTTGACAAAACAAAGCAAGTGTCCACCTATCAGGAAGTAGTTCGTGGCGAGGGCATTTTG
CCCGACGGCGGGGAGTACAAGCCCCCTTCGGATTCTTTGAAAAGCCGAGACTATTACACG
GATTTCCTCGTTACCCTGGCTGTGCCCTCGGCGGTAGCACTGGTGCTTTTCCTAATACTC
GCTTATATCATGTGCTGCCGACGGGAAGGAGT
INTRON 6 - 7 4690496 4691428 933
GTGAGTACTTTCAAACACTAATAAA..........TTCATAAATTTTGTTTTGTTTCTAG
7 EXON 7 4690469 4690495 2 2 27
GGAAAAGAGAGACATGCAAACCCCAGA
INTRON 7 - 8 4689768 4690468 701
GTAAGTGTCTTCTTTGCTGTTATTT..........TTGTTTTATTTCTTATTTTATGTAG
8 EXON 8 4689579 4689767 2 2 189
TATCCAGCTTGTCCATCACAGCTCGATTCAGAAATCTACCAAGGAGCTTCGAGACATGTC
CAAAAACAGAGAGATTGCATGGCCCCTGTCTACCCTGCCTGTGTTCCACCCTGTAACTGG
GGAGGTTATACCTCCCATGCACACAGACAACTACGACAGCACCAACATGCCGTTGATGCA
GGCACAGCA
INTRON 8 - 9 4678111 4689578 11468
GTGAGTACCCATGTGGGAACACAGG..........ACTCAATAATGTTAATCATTTCTAG
9 EXON 9 4678067 4678110 2 1 44
GAACTTGCCACACCAGACTCAGATCCCTCAACCGCAGACTACAG
INTRON 9 - 10 4674633 4678066 3434
GTGAGTACTAAGATGCTAATTCAGT..........GTTCATGTTGTCATCCCGGTTACAG
10 EXON 10 4674354 4674632 1 - 279
GTAAATGGTATCCCTGAAGAAAGAAAGCTGACAGAAGCAATGAGTTTATAATCAGCACTG
CTGCAGCCGTGTCTCACCCCTTTCCCTTCCAATAATGCATGAGCTTTCCTGACATCGGTT
ACGCATGCCCACTGTGTTGAGAACCAAATACCATGACACATCTCTCACTTACTAATGCAT
TTTTTTTGTACTTAAAGCATTTTTGAAAATTTATAAGACATCAACGACTTTATATTTGTT
ACAATAAAAAGTGAACTTTAAAATAAATATTAATGGAGC
3' upstream sequence
CTAATGTGTGGTAAAATTTCTTTCAGAAATGTATTTGATTGCTTCCTGTGTGGTAGAAAT
TTGTTAGTCGCTAGGAGTGGGGTCAGTCAACAGGATTTTTTACTAAGTGCTTCTTATGAA
TTGTGTTCCATCGAAAGTTTACAAGTGAACTAGCTGGTGATGCTGTATTGCTGGGCCTGA
GCACTGGCTGGGATAATAGAGCAGTTAAGGGCAGATAATAGCACTAACGTCTGTACTAGG
TCCAAGGCTTGATGCTCTTTCATGGTCTCCCATTTAAATAATGCTTTAACTCCTGCAGAC
TGTAGAGCCTCTTGTTTCATTGTATTTTATAGAGTGCTTTAGAGTGAGCATAGTGGTTTT
GTTTGTTTGTTTGTTTGTTTGTTTGTTTGGACAGAGAATAGAACACGCCCAGTTTATGTA
GGGCAGCCAAGGGTGTATACTTGGCTTTATAATTGGATGTTTGCAAGCCAGGGTCTGTTC
CACAGAGAGAGAACAGTTACTAATAGGGCTGTAAACCAGCCCTGCAGTGTCTTACCATGG
GAAAGTTCAAGGTCCAGGCTTGGTGTCTTCTTCATCCAATGTTCTTCTGTTTTATGACTC
CAACACTGTTGGGTCATTGTGGATACCAGCTCCTGGCCCTTCTTACAGAAGACCATTAGA
AAATTAACATTAGTAAGTGAGCTAAGTCATATAAAGATGAGGTAAGCTCATGTAATATTT
TTCAAATAATTCCTTATTACTTTGAACCATTAATTTCCAGATCCTGCATCTTTAGGCATT
AAGACAGTTGCTATAGTTGTTAATGTTAGCTGTTTAGTTGGCATGTAGTGTTCAGTCTGA
CAACCAGATTTAGCTGCCTTCAAAGAAATATACCTGGTCATTTGGGGAAACATTTCTCCC
AAGTGGCAGATATCCCACATTGACTCTTACTTGTTTCCAGGGACTAGCCTGGAATGAAAG
GCTGATCTGACCAAATCATAGTATTTTGTTCTTCTGAAGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Sgce (ENSMUSG00000004631)
Transcript ID ENSMUST00000126151
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 397 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information