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Target CDS Information

Gene Symbol (Gene ID) Dlg1 (ENSMUSG00000022770)
Cross Reference
GO GO:0001657, GO:0001658, GO:0001771, ...show all
goslim_goa GO:0002376, GO:0003674, GO:0005198, ...show all
MGI_trans_name Dlg1-010
OTTP OTTMUSP00000065102
OTTT OTTMUST00000039026
UniParc UPI0003335400
Uniprot/SPTREMBL S4R2V5
Vega_transcript Dlg1-010, OTTMUST00000039026
Vega_translation 218526, OTTMUSP00000065102
Definition codon_start:2
protein_id:ENSMUSP00000138804
translation:
XFEPARSAPSMSEPSLIMTRLRTAGFPVKD

Chromosome 16
Length
Position(start - end)
1834
31836270 - 31838105
Orient to Chromosome plus
Link Location : (16:31836270-31838105)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dlg1 (ENSMUSG00000022770)
Transcript ID ENSMUST00000130920
Reports
substitution
cSNPs0
Insertion20
Deletion22
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000130920)
FEPARSAPSMSEPSLIMTRLRTAGFPVKD*
MSMv4 transcript
FEPARSAPSMSEPSLIMTRLRTAGFPVKD*
homology100.00 (30 / 30)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dlg1 (ENSMUSG00000022770)
Transcript ID ENSMUST00000130920
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACATATTTAATAACTCACTTGAAAGAGAGAGATAACCCATCAGGCACCCC
TCATCAAGTGGTCAAAGACAATAACATTATCGGACTTAGTAACGAGACAGACGAGAGTTT
CGGTGGTTACATGGGGGCATCGTAGCCTCAGTCTGTGTAGACACATCAGAAAAAAACAAA
ATTGGAAGATACTGTACATCATCCAAAAAAGATACTGTTGTGAGTCCCAGCTTTTGACCA
GGCTCACAGTTCAGGGGGATAGATTAAAATAGCCGTTGTCAAAAAATTTTTAATGTTTTT
TAGATTTTATGAATGTTACTTCTGATTGCCATTTTTGTCATTTCAGCAATTTAAAAATTA
CAAAATAGTTATTTACTCCTATTGGCTGGTTTGGATTTTTTTCCATCATTATTCTATATA
AGTTCTACATTTGAAAGTAAGATTAGCTAGTTTTTCTTAAGAAAATTTTATCCATCAAGC
TGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTT
CTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGA
GAAACTCTGTCTCAAAAAAACAAGAAAATTTTATCCATCAAAGCATCTGACTTTTTTCAT
TAAAAACTGGAATAATTCCTATTTTCTACTTTACATCCAAATGAAAATATAATATAAAAT
TGCTAGTATTATTTGATTCATAGAGTTGCCTTAAATGTGACTTGAACAACAATATCCTCT
ACCAGCCAGTTCTGGTTTCAGTAGCTAGAAGCTTACTACTGTGTTAAACTTCCAGCCTAC
TTGGTCAATTTTAAGACATTTTATATAGTTTATGTTTTATCATTAAAAACTTGTTTTTAG
GAATATTTACTTTCTTTTTTTCTCCATCAGAGTACAGTCGTTTTGAAGCTAAAATCCATG
ACTTACGGGAGCAGATGATGAATAGCAGTGTCAGTTCAGGGTCAGGGTCT
1 EXON 1 31836270 31836304 - 1 35
CTTCGAACCAGCCAGAAGCGCTCCCTCTATGTCAG
INTRON 1 - 2 31836305 31838049 1745
GTAAGTGTCGGTGGGACTGTGACAT..........TTATGAACTTCTTTCTTGAGTCTAG
2 EXON 2 31838050 31838226 1 - 177
AGCCCTCTTTGATTATGACAAGACTAAGGACAGCGGGCTTCCCAGTCAAGGACTGAACTT
CCGCTTTGGAGACATCCTCCATGTCATCAATGCTTCTGACGACGAGTGGTGGCAAGCCAG
GCAGGTCACCCCAGACGGGGAGAGTGACGAAGTCGGAGTGATTCCTAGTAAACGAAG
INTRON 2 - 3 31838227 31842769 4543
GTACATGGTGTTTCTTACTTCTTCA..........ACAAAGACCTTCTGTACTTTGACAG
3 EXON 3 31842770 31842839 - - 70
AGTTGAGAAGAAAGAACGAGCCCGATTAAAAACGGTCAAATTCAATTCTAAAACAAGAGG
AGATAAAGGG
INTRON 3 - 4 31842840 31846836 3997
GTGAGTATACAAAATCTTGTACATT..........TGCCCCTCCTTCTCTTCTTCAGCAG
4 EXON 4 31846837 31846933 - - 97
TCATTCAATGACAAGCGTAAAAAGAACCTCTTTTCCCGAAAATTTCCCTTCTACAAGAAC
AAGGACCAGAGTGAACAGGAAACGAGTGATGCTGACC
INTRON 4 - 5 31846934 31847635 702
GTAAGTATGTGGCTCCATTGGTCAA..........GCTCTCTGGGGACTACTCTCTACAG
5 EXON 5 31847636 31847669 - - 34
GAGATCCCTGACGACATGGGATCAAAAGGCCTGA
INTRON 5 - 6 31847670 31853842 6173
GTAAGTGATCAAAATACTCCCAAGT..........TATTTTCATTTTCCTTCAATTTCAG
6 EXON 6 31853843 31853884 - - 42
AGCACGTAACTTCTAATGCCAGCGATAGTGAAAGTAGTTACC
INTRON 6 - 7 31853885 31856440 2556
GTAAGTGTTGCATGTTACTTGTTCT..........TATCCTTGCTTTAACTTTCCAATAG
7 EXON 7 31856441 31856491 - - 51
GTGGTCAAGAAGAATATGTTTTATCTTATGAGCCAGTGAATCAACAAGAAG
INTRON 7 - 8 31856492 31857546 1055
GTTTGTGGAGTTTGTTGATGTTTTA..........CTTTTTAATACGTTTATTTTTGTAG
8 EXON 8 31857547 31857648 - - 102
TTAATTATACCCGACCAGTCATCATATTAGGACCTATGAAAGACAGAGTAAATGATGACT
TAATCTCAGAATTTCCTGACAAATTTGGATCCTGTGTCCCTC
INTRON 8 - 9 31857649 31857891 243
GTGAGTAACCCACATTAAAACCTAT..........TTCCCCAAGTTCTTTTTTATTGAAG
9 EXON 9 31857892 31857961 - - 70
ATACAACTAGACCGAAGCGTGACTATGAGGTGGATGGACGAGATTATCATTTTGTGACTT
CAAGGGAACA
3' upstream sequence
GATGGAAAAGGATATTCAGGAGCATAAGTTCATTGAAGCTGGCCAGTATAACAACCATCT
GTATGGGACGAGCGTGCAGTCCGTGCGAGCAGTGGCAGAGAAGGTAATCACCAGGCCACG
CAGCGTAGAGTGTCTAATAAAAGCTACTTTACTTTATTTGCATTGAGAAAAATAATACAG
CTTACATAGCCTTGGTAGCTTATTAACGTTACTGCTTTAGTTGAGTAAATATTAGATTTT
CAGTGAATTAGAAAAGTTCATCTAAGAACAGGTTGTCAAGTCTGAGAATGTGATGGTCAC
GTTCATCTGTAAAATGTGGGACGGTTTTCCTAAGGCTTTGTCCTGGCTAAGTCACCAGTG
TCCCTGAGAAACGTGAATTCCCAGGAAGGTCTTTGGAACTTAAACTTTACTCGACCACTA
CTCAAAATGGAAGTCTTATTCCAAATAGTTTCTTGTATTGGTGCAGGTGTCTCTCTTATG
TTGGGATCCATCCCAGGAGCAACTTATAAAGGCAAACACCATAAAAGCTCATACACAGGT
GCAGGAAGGGCTGCTGGTGGTTGGTTCAAGTCCAGGCTTGCTGTGGGTAACTATATGAAA
CAGTTATACTGACTTTTATCATGATTGGGCACAGAACATAACAGAATATGTAATCAGTTG
TGGCATTAGAAAGTTTTCCAGTAACACCAGAAACATATCAGAAAGTTTCCTTATAATGGC
AGGCTATCCAGGTAACTGCTACCTAGGCCTTAACATTTTACCAAGGTCCCAACAAATATA
GCTTAAATATCAGACATCCCTGAATTCCCAACAGACCTTTTTTTAGAAATTTATATCATA
ATTATAAGCTACATGTAAAAAATTCTAGAATAGTGCTCTAGTTTATTTCTGTCGTTGTGA
TAAAAACTCCCTGATCAAAGCATCTTAGAGGTTTATTTAGCTTATAATTCCAGTGATCCT
TTCACTGATGGGAATTCAGAGTGGCAAGAACTCGAAACAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Dlg1 (ENSMUSG00000022770)
Transcript ID ENSMUST00000130920
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 30 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information