MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Isoc2b (ENSMUSG00000052605)

Cross Reference

GO	GO:0003674, GO:0003824, GO:0005739, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Isoc2b-003
OTTP	OTTMUSP00000026983
OTTT	OTTMUST00000056204
UniParc	UPI00015AA50F
Uniprot/SPTREMBL	F6RCA2
Vega_transcript	Isoc2b-003, OTTMUST00000056204
Vega_translation	199846, OTTMUSP00000026983

Definition

codon_start:3
protein_id:ENSMUSP00000121925
translation:

XQMLEIPVLLTEHYPQGLGPTVPELGAQGLRTMSKTSFSMVPPLQQELDKLPQLQSVLLC
GIETQGCILHTALDLLDRGLQVHVAVDACSSQSEMNRLVALARMQQSGVFLSTSEVLILQ
LVKDAAHPQFKEVRPPLSPRHRRQASRPLVIFIFTLSLSYYVFPVCMYVL

Chromosome

Length
Position(start - end)

1893
4849335 - 4851229

Orient to Chromosome

minus

Link

Location : (7:4849335-4851229)
/

Detail Map

name	Isoc2b (ENSMUSG00000052605)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Isoc2b note : isochorismatase domain containing 2b [Source:MGI Symbol;Acc:MGI:1914691]

name	Isoc2b (ENSMUSG00000052605)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000064547

name	Isoc2b (ENSMUSG00000052605)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000133406

name	Isoc2b (ENSMUSG00000052605) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS20748.1 Uniprot/SWISSPROT:Q9DCC7 RefSeq_peptide:NP_080434 RefSeq_mRNA:NM_026158.2 RefSeq_peptide_predicted:XP_006540391.1 Vega_transcript:Isoc2b-001 Vega_transcript:OTTMUST00000056202 UCSC:uc009eyw.1 Fantom:0610042E07 EMBL:AK002905 EMBL:BC046756 EMBL:BC049278 GO:GO:0003674 GO:GO:0003824 GO:GO:0005634 GO:GO:0005739 GO:GO:0008150 GO:GO:0008152 MGI_trans_name:Isoc2b-001 Vega_translation:199845 Vega_translation:OTTMUSP00000026982 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0008150 goslim_goa:GO:0043226 protein_id:AAH46756.1 protein_id:AAH49278.1 protein_id:BAB22446.1 OTTP:OTTMUSP00000026982 OTTT:OTTMUST00000056202 UniParc:UPI000000BAB9
definition	note : transcript_id=ENSMUST00000064547 protein_id : ENSMUSP00000066859 translation : MGAAKASLGRIFPESSILFLCDMQEKLRDRILYFPQIVSKAARMLKVAQMLEIPVLLTEHYPQGLGPTVPELGAQGLRTMSKTSFSMVPPLQQELDKLPQLQSVLLCGIETQGCILHTALDLLDRGLQVHVAVDACSSQSEMNRLVALARMQQSGVFLSTSEVLILQLVKDAAHPQFKEIQKILKEPVTDIGLLGFFQGKKNSLLPNSRT

name	Isoc2b (ENSMUSG00000052605) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Isoc2b-003 Vega_transcript:OTTMUST00000056204 Uniprot/SPTREMBL:F6RCA2 GO:GO:0003674 GO:GO:0003824 GO:GO:0005739 GO:GO:0008150 GO:GO:0008152 MGI_trans_name:Isoc2b-003 Vega_translation:199846 Vega_translation:OTTMUSP00000026983 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000026983 OTTT:OTTMUST00000056204 UniParc:UPI00015AA50F
definition	codon_start : 3 note : transcript_id=ENSMUST00000133406 protein_id : ENSMUSP00000121925 translation : XQMLEIPVLLTEHYPQGLGPTVPELGAQGLRTMSKTSFSMVPPLQQELDKLPQLQSVLLCGIETQGCILHTALDLLDRGLQVHVAVDACSSQSEMNRLVALARMQQSGVFLSTSEVLILQLVKDAAHPQFKEVRPPLSPRHRRQASRPLVIFIFTLSLSYYVFPVCMYVL

name
type	misc_feature
link
xref
definition	note : contig AC162034.6 112345..197907(1)

name	Isoc2b (ENSMUSG00000052605)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000056205 Vega_transcript:OTTMUST00000056205 MGI_trans_name:Isoc2b-004 OTTT:OTTMUST00000056205
definition	note : processed_transcript note : transcript_id=ENSMUST00000128677

name	Isoc2b (ENSMUSG00000052605)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000056203 Vega_transcript:OTTMUST00000056203 MGI_trans_name:Isoc2b-002 OTTT:OTTMUST00000056203
definition	note : processed_transcript note : transcript_id=ENSMUST00000134243

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Isoc2b (ENSMUSG00000052605)
Transcript ID	ENSMUST00000133406

Reports
substitution
cSNPs	6
Insertion	10
Deletion	16
SNPs	+1kb 4851331(c.-104A>G), 4851412(c.-185A>T), 4851526(c.-299G>C), 4851591(c.-364A>G), 4851593(c.-366G>A), 4851594(c.-367T>C), 4851629(c.-402T>G), 4851630(c.-403C>T), 4851827(c.-600C>G), 4851890(c.-663G>A), 4852153(c.-926G>A), 4852502(c.-1275T>C), 4852507(c.-1280T>G), 4852521(c.-1294G>C), 4852551(c.-1324G>C), 4852581(c.-1354G>C), 4852611(c.-1384G>C), 4852641(c.-1414G>C), 4852671(c.-1444G>C), 4852701(c.-1474G>C), 4852807(c.-1580T>G), 4852821(c.-1594G>C), 4852851(c.-1624G>C), 4852881(c.-1654G>C), 4852911(c.-1684G>C), 4852941(c.-1714G>C), 4853064(c.-1837A>T), 4853069(c.-1842G>A), 4853138(c.-1911C>T), 4853209(c.-1982C>A), 4853390(c.-2163C>T), 4853508(c.-2281T>C), 4853547(c.-2320A>G), 4853555(c.-2328C>T), 4853743(c.-2516C>A), 4853847(c.-2620T>A), 4853922(c.-2695C>G), 4853946(c.-2719G>A), 4854040(c.-2813C>G), 4854117(c.-2890C>G), 4854128(c.-2901A>G), 4854167(c.-2940G>C), 4854263(c.-3036G>A), 4854285(c.-3058C>T), 4854502(c.-3275G>A), 4854565(c.-3338C>T), 4854878(c.-3651T>C), 4855010(c.-3783G>A), 4855279(c.-4052G>T), 4856069(c.-4842C>T), 5'UTR CDS 4849461(c.382C>A), 4849474(c.369T>C), 4850778(c.252A>G), 4851046(c.182T>C), 4851162(c.66C>T), 4851180(c.48T>C), 3'UTR INTRON 4849817(c.276-250G>C), 4850062(c.276-495C>T), 4850190(c.275+565G>A), 4850209(c.275+546A>G), 4850226(c.275+529T>C), 4850274(c.275+481A>C), 4850276(c.275+479C>G), 4850395(c.275+360C>T), 4850870(c.205-45A>G), -1kb 4844914(c.4421A>G), 4845121(c.4214T>C), 4845207(c.4128A>G), 4845457(c.3878C>T), 4845794(c.3541T>C), 4845800(c.3535A>G), 4845840(c.3495A>G), 4846051(c.3284T>C), 4846059(c.3276T>G), 4846140(c.3195G>A), 4846155(c.3180T>C), 4846225(c.3110C>T), 4846296(c.3039T>C), 4846297(c.3038G>A), 4846334(c.3001C>G), 4846352(c.2983G>C), 4846386(c.2949C>T), 4846593(c.2742G>T), 4846620(c.2715G>A), 4846674(c.2661A>G), 4846682(c.2653G>C), 4846684(c.2651G>A), 4846757(c.2578G>A), 4846771(c.2564G>A), 4846839(c.2496G>A), 4846849(c.2486C>T), 4846900(c.2435T>C), 4847333(c.2002T>C), 4847377(c.1958A>G), 4847556(c.1779A>G), 4847651(c.1684C>G), 4847667(c.1668C>T), 4847678(c.1657T>C), 4847870(c.1465T>C), 4847872(c.1463C>A), 4847908(c.1427T>C), 4847946(c.1389C>T), 4848064(c.1271G>A), 4848114(c.1221C>A), 4848382(c.953G>A), 4848394(c.941G>A), 4848404(c.931C>T), 4848624(c.711T>C), 4848745(c.590A>C), 4848772(c.563A>G), 4848981(c.354G>A), 4849147(c.188G>A), 4849177(c.158G>A), 4849220(c.115T>C), 4849241(c.94G>A), 4849291(c.*44T>C),
Insertions	+1kb 4851812 (c.-586_-585insGGAGGG), 4855951 (c.-4725_-4724insG), 4856127 (c.-4901_-4900insC), 5'UTR CDS 3'UTR INTRON -1kb 4844710 (c.4624_4625insCGCGCACGCGC), 4845449 (c.3883_3885dupTAA), 4847574 (c.1760dupA), 4847855 (c.1479_1480insA), 4848427 (c.907dupA), 4849092 (c.242_243insGG),
Deletions	+1kb 4851698 (c.-479_-472delGAGGGAGG), 4853472 (c.-2251_-2246delTGTGTG), 4853487 (c.-2266_-2261delGTTTGT), 4854833 (c.-3607delA), 4854990 (c.-3769_-3764delATGTGT), 4855188 (c.-3965_-3962delTTTT), 5'UTR CDS 3'UTR INTRON 4850554 (c.275+199_275+200delTT), -1kb 4845895 (c.3437_3439delTGG), 4846297 (c.3036_3037delAC), 4846699 (c.2633_2635delTGA), 4847030 (c.2300_2304delTCTTA), 4847459 (c.1872_1875delTTAT), 4849093 (c.239_241delTTT), 4849109 (c.225delT), 4849114 (c.220delT), 4849315 (c.*19delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	4
non-synonymous num	2
synonymous substitutions	4849474 (p.Asp123Asp), 4850778 (p.Ala84Ala), 4851162 (p.Pro22Pro), 4851180 (p.Gly16Gly),
non-synonymous substitutions	4849461 (p.Gln128Lys), 4851046 (p.Ile61Thr),
B6 transcript (ENSMUST00000133406)	QMLEIPVLLTEHYPQGLGPTVPELGAQGLRTMSKTSFSMVPPLQQELDKLPQLQSVLLCG IETQGCILHTALDLLDRGLQVHVAVDACSSQSEMNRLVALARMQQSGVFLSTSEVLILQL VKDAAHPQFKEVRPPLSPRHRRQASRPLVIFIFTLSLSYYVFPVCMYVL
MSMv4 transcript	QMLEIPVLLTEHYPQGLGPTVPELGAQGLRTMSKTSFSMVPPLQQELDKLPQLQSVLLCG TETQGCILHTALDLLDRGLQVHVAVDACSSQSEMNRLVALARMQQSGVFLSTSEVLILQL VKDAAHPKFKEVRPPLSPRHRRQASRPLVIFIFTLSLSYYVFPVCMYVL
homology	98.82 (169 / 169)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Isoc2b (ENSMUSG00000052605)
Transcript ID	ENSMUST00000133406

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GAAGATTGTAAGTTTCTGTGTAAGCCCAGCCTGGGCTACATAGACAATCC CTGTGGCACTTTTTCTTATATTTTTTAGTTGTGAACCTAGCTTTTAATGGCTGAGCCATC TCTCCACCTCTATCCCCAACCATGGCACTTTTTATCTCAAAGACAGTGTCCAAGATCTGT ATGTCCCTGAGCAGGTCACCTTATTGCTTAGACTCAGTTTCCACAGGGGGTGGAAGCCTG AGTGAGCCTCATTAGGTATAGTTAGAAAGAGGTCACAGAATTATTTGCCAGCATTGTACA GCCTTTGGGGAGGAGAAAGGGGATACAGTCTGAGGGGCTGACACTGGCAACAGAGTGGAC ATGCTCAGAGAAAGCTTTTGGGGGGAAGTGGCCTCACCTATGAGCTGGGCGGCAGAGAGG AAGAAAAGGAGAAAGAGAGGGAAGAAGGGGGAAGAAGGAGGGAGAGGGAAGAAGGACATG AGGAAGGGAGGGAGAGAAGGGGAGGGGGAAAGAGGGAAGAAGGGAGAGGGAGGGAGGGAG GTAAAAGGAGGAATTCCTGGCCAATAACAATTGGTGAAAAGGCCTAGAGGCATGTGCAGG AAGACAAGGTGCACAGGCCACAGAGCCAAGTGCTCAGGCTGTCAACAAGTCCCTGTACTT TTGTCCCTACCTGACCCTGTTTACTGTCCCTTTGTCCACCCCGCAGACAATGGCAGCAGC CAAAGCTAGCCTCGGCCGGATCTTCCCAGAGTCCTCCATCCTGTTCCTATGTGACATGCA GGAGAAACTTCGAGATAGAATCCTCTACTTCCCACAGATCGTGTCAATGGCCGCTCGGAT GCTTAAGGTACAAGACAGCCTTGCGTTCCAGAGCCCAGAGCATGCAGACTGAAACCTTCC TCACTCAAGCACAGGGTCCCAAGCCCACTCTCATCTCTCAGACTCAGGAATCTGGCCGTC AGCCTGCATCCTTGGGTTCTAGCACAATGTCTTCCCTCCCATACAGGTAG
1	EXON 1	4851024	4851229	-	0	206	CCCAGATGCTAGAAATCCCCGTCTTGCTGACAGAGCATTACCCACAAGGCCTGGGCCCCA CAGTTCCTGAGCTGGGTGCTCAGGGTCTGCGAACCATGAGCAAAACGTCCTTCAGCATGG TGCCCCCGCTTCAACAGGAGTTGGACAAACTGCCCCAGCTGCAGTCCGTGCTACTCTGTG GCACTGAGACCCAAGGCTGCATCTTG
	INTRON 1 - 2	4850826	4851023			198	GTGAGGCTCCTTGTCCTCAGGGCTA..........ACCTTGACTCCTCTCTACGCCTTAG
2	EXON 2	4850755	4850825	0	2	71	CACACAGCTCTGGACCTCCTGGACCGTGGGCTACAGGTTCATGTAGCGGTGGATGCCTGT TCTTCTCAAAG
	INTRON 2 - 3	4849568	4850754			1187	GTGAGAAGGTCACCTTGTGGTGTAT..........TCTTCCTCCTGCCCTCCCTCCGCAG
3	EXON 3	4849335	4849567	2	-	233	TGAGATGAACCGGCTCGTGGCACTGGCCCGAATGCAGCAGAGTGGCGTCTTTCTGTCCAC GAGCGAGGTGCTGATTCTCCAGCTGGTGAAGGACGCTGCCCACCCAAAGTTCAAGGAGGT GAGGCCTCCTCTGTCACCCAGGCACAGGAGACAGGCTTCTCGTCCTCTTGTCATTTTTAT TTTTACTTTGTCTTTGTCTTATTATGTTTTCCCTGTATGTATGTATGTATTAT
	3' upstream sequence						GTATGTATGTATGTATGTATGTGCACCACTTGTGTGCCTGGTGCCTGGGTGCCCTCAAAG GCCAGAAGAGGGTATTAGATTTCCTGAACAGAAATTATAGACAGTTGTGAGCCACAATGT GGGAACTAGGAGTCAAATTCAAATCTGGGTCCTCTGGAAGAACAGCCACTACTCTTAACT GCTGAGCAATTTCTCCAACCCCACTTTGTTGTTGTTGGGTTTTTTGTTTTGTTGTTTGTT TTTTGTTTGTTTGTTTGTTTTTGAGACAAGGTTGACCTCAGGCTCCCTCTGTATCTAAGG ATGACTTAGCACTTCTGATCTACCTTCTGTGTGCTGCAATTACAGCTGAATACACCATGC CCATATACATATATAGTAATCTATGTTTATCTTATGTGTATATGGGTTTTACCTGCATGT ATATATGGGGACAAAATTCACACAGATCCTACAAAGGCCAGAAAAGGATATCAGATCTCG ATAGAACTGGAATGATAGTCAGTTTAGAGGCACCAAGTGTGTGCTGGGAATCCAACCCAG GCTCTCTGGGAAATAGGCCAGTGTTCTTAACAGGTAAGCCTTCTCCAGCCCCCGCATTTT TAAAGATTTGTGTTTCTATTTATGTGTATGTGTGTGCATGTATGTCAGGATATGCACCCC AGAAGACTGCATCAGACCACCTGGATCTGGGGTTACAGGGGAATGTGAGACACCTGATAT GCTGAGAACTATATTTTGGTCTTCTGTAAAAGCAGCAAGCATCCTTAACAATTGAACTGT CTCTCTGGCCCCGTGCTTTATTTTTTTAAAAATATAGTGCTGGTGACAGACCCCAGGGCT CTGTGCCTGCTAGGGAAAAACCTTAGTGACTTGAACTGTATCTCCAGCCCTCCTTAAAAA AAAAAAAGTGTGTGTGCACGTGCATGAGTGTGGGCCCTGCAGTGCACGTGCAAGTGTGAG ATCAGAGAACAACTTTTGGGAGTCAGTTCTCTCCTATCTG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Isoc2b (ENSMUSG00000052605)
Transcript ID	ENSMUST00000133406

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 169 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information