MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Csnk1e (ENSMUSG00000022433)

Cross Reference

EMBL	AL591913
GO	GO:0004674, GO:0005524, GO:0005737, ...show all
goslim_goa	GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name	Csnk1e-004
OTTP	OTTMUSP00000037969
OTTT	OTTMUST00000073383
UCSC	uc007wtm.1
UniParc	UPI00015F3B24
Uniprot/SPTREMBL	A8Y2Z5
Vega_transcript	Csnk1e-004, OTTMUST00000073383

Vega_translation

217322, OTTMUSP00000037969

Definition

protein_id:ENSMUSP00000122135
translation:

MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQ
GGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEY

Chromosome

Length
Position(start - end)

12378
79426468 - 79438847

Orient to Chromosome

minus

Link

Location : (15:79426468-79438847)
/

Detail Map

name	Csnk1e (ENSMUSG00000022433)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Csnk1e note : casein kinase 1, epsilon [Source:MGI Symbol;Acc:MGI:1351660]

name	Gm16059 (ENSMUSG00000085802)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm16059 note : predicted gene 16059 [Source:MGI Symbol;Acc:MGI:3802029]

name	Csnk1e (ENSMUSG00000022433)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000117786

name	Csnk1e (ENSMUSG00000022433)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000120859

name	Csnk1e (ENSMUSG00000022433)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000122044

name	Csnk1e (ENSMUSG00000022433)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000144790

name	Csnk1e (ENSMUSG00000022433)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000135519

name	Csnk1e (ENSMUSG00000022433)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000156043

name	Csnk1e (ENSMUSG00000022433) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS27640.1 Uniprot/SWISSPROT:Q9JMK2 RefSeq_peptide:NP_001276827 RefSeq_peptide:NP_038795 RefSeq_mRNA:NM_001289898.1 RefSeq_mRNA:NM_013767.6 Vega_transcript:Csnk1e-001 Vega_transcript:OTTMUST00000073380 UCSC:uc007wtl.2 UCSC:uc011zwb.1 EMBL:AB028736 EMBL:BC026127 GO:GO:0004672 GO:GO:0004674 GO:GO:0004674 GO:GO:0004674 GO:GO:0005515 GO:GO:0005515 GO:GO:0005524 GO:GO:0005634 GO:GO:0005634 GO:GO:0005654 GO:GO:0005737 GO:GO:0005737 GO:GO:0005829 GO:GO:0006468 GO:GO:0006468 GO:GO:0006897 GO:GO:0007623 GO:GO:0008360 GO:GO:0016055 GO:GO:0018105 GO:GO:0030178 GO:GO:0030529 GO:GO:0032436 GO:GO:0032922 GO:GO:0034613 GO:GO:0042752 GO:GO:0044822 GO:GO:0044822 GO:GO:0090263 MGI_trans_name:Csnk1e-001 Vega_translation:217318 Vega_translation:OTTMUSP00000037966 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005829 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0016301 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:AAH26127.1 protein_id:BAA88107.2 OTTP:OTTMUSP00000037966 OTTT:OTTMUST00000073380 Reactome:R-MMU-162582 Reactome:R-MMU-1640170 Reactome:R-MMU-1852241 Reactome:R-MMU-195721 Reactome:R-MMU-201681 Reactome:R-MMU-201688 Reactome:R-MMU-2565942 Reactome:R-MMU-380259 Reactome:R-MMU-380270 Reactome:R-MMU-380284 Reactome:R-MMU-380287 Reactome:R-MMU-400253 Reactome:R-MMU-453274 Reactome:R-MMU-508751 Reactome:R-MMU-5334727 Reactome:R-MMU-5617833 Reactome:R-MMU-5620912 Reactome:R-MMU-69275 Reactome:R-MMU-69278 UniParc:UPI00000E73A5
definition	note : transcript_id=ENSMUST00000117786 protein_id : ENSMUSP00000113341 translation : MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKFGAARNPEDVDRERREHEREERMGQLRGSATRALPPGPPTGATANRLRSAAEPVASTPASRIQQTGNTSPRAISRADRERKVSMRLHRGAPANVSSSDLTGRQEVSRLAASQTSVPFDHLGK

name	Csnk1e (ENSMUSG00000022433) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS27640.1 Uniprot/SWISSPROT:Q9JMK2 Vega_transcript:Csnk1e-003 Vega_transcript:OTTMUST00000073382 UCSC:uc007wtl.2 EMBL:AB028736 EMBL:BC026127 GO:GO:0004672 GO:GO:0004674 GO:GO:0005515 GO:GO:0005524 GO:GO:0005634 GO:GO:0005654 GO:GO:0005737 GO:GO:0005829 GO:GO:0006468 GO:GO:0006897 GO:GO:0007623 GO:GO:0008360 GO:GO:0016055 GO:GO:0018105 GO:GO:0030178 GO:GO:0030529 GO:GO:0032436 GO:GO:0032922 GO:GO:0034613 GO:GO:0042752 GO:GO:0044822 GO:GO:0090263 MGI_trans_name:Csnk1e-003 Vega_translation:217319 Vega_translation:OTTMUSP00000037968 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005829 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0016301 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:AAH26127.1 protein_id:BAA88107.2 OTTP:OTTMUSP00000037968 OTTT:OTTMUST00000073382 Reactome:R-MMU-162582 Reactome:R-MMU-1640170 Reactome:R-MMU-1852241 Reactome:R-MMU-195721 Reactome:R-MMU-201681 Reactome:R-MMU-201688 Reactome:R-MMU-2565942 Reactome:R-MMU-380259 Reactome:R-MMU-380270 Reactome:R-MMU-380284 Reactome:R-MMU-380287 Reactome:R-MMU-400253 Reactome:R-MMU-453274 Reactome:R-MMU-508751 Reactome:R-MMU-5334727 Reactome:R-MMU-5617833 Reactome:R-MMU-5620912 Reactome:R-MMU-69275 Reactome:R-MMU-69278 UniParc:UPI00000E73A5
definition	note : transcript_id=ENSMUST00000120859 protein_id : ENSMUSP00000113975 translation : MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKFGAARNPEDVDRERREHEREERMGQLRGSATRALPPGPPTGATANRLRSAAEPVASTPASRIQQTGNTSPRAISRADRERKVSMRLHRGAPANVSSSDLTGRQEVSRLAASQTSVPFDHLGK

name	Csnk1e (ENSMUSG00000022433) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS70646.1 RefSeq_peptide:NP_001276828 RefSeq_mRNA:NM_001289899.1 RefSeq_mRNA_predicted:XM_006521046 RefSeq_mRNA_predicted:XM_006521047 RefSeq_peptide_predicted:XP_011243957.1 Vega_transcript:Csnk1e-002 Vega_transcript:OTTMUST00000073381 Uniprot/SPTREMBL:Q3TYE1 UCSC:uc007wtm.1 Fantom:K230304A10 EMBL:AK158709 EMBL:AL591913 GO:GO:0004674 GO:GO:0005524 GO:GO:0005737 GO:GO:0006468 GO:GO:0006897 GO:GO:0007623 GO:GO:0008360 GO:GO:0016055 GO:GO:0018105 GO:GO:0030178 GO:GO:0030529 GO:GO:0034613 GO:GO:0044822 GO:GO:0090263 MGI_trans_name:Csnk1e-002 Vega_translation:217320 Vega_translation:OTTMUSP00000037967 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0016301 goslim_goa:GO:0043167 protein_id:BAE34622.1 OTTP:OTTMUSP00000037967 OTTT:OTTMUST00000073381 UniParc:UPI000024EF8C
definition	note : transcript_id=ENSMUST00000122044 protein_id : ENSMUSP00000113096 translation : MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKFGASSSQAQPRDNEALAPPCPRPWPCAGPAYSPTYWCPAPLGTQGPPDRPVEEEVEQLPPQRYWPVVWTPGPQF

name	Csnk1e (ENSMUSG00000022433) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Csnk1e-005 Vega_transcript:OTTMUST00000073384 Uniprot/SPTREMBL:A8Y2Z9 EMBL:AL591913 GO:GO:0004674 GO:GO:0005524 GO:GO:0005737 GO:GO:0006468 GO:GO:0006897 GO:GO:0007623 GO:GO:0008360 GO:GO:0016055 GO:GO:0018105 GO:GO:0030178 GO:GO:0030529 GO:GO:0034613 GO:GO:0044822 GO:GO:0090263 MGI_trans_name:Csnk1e-005 Vega_translation:217321 Vega_translation:OTTMUSP00000037970 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0016301 goslim_goa:GO:0043167 OTTP:OTTMUSP00000037970 OTTT:OTTMUST00000073384 UniParc:UPI00015F3B25
definition	note : transcript_id=ENSMUST00000144790 protein_id : ENSMUSP00000115637 translation : MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKK

name	Csnk1e (ENSMUSG00000022433) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Csnk1e-004 Vega_transcript:OTTMUST00000073383 Uniprot/SPTREMBL:A8Y2Z5 UCSC:uc007wtm.1 EMBL:AL591913 GO:GO:0004674 GO:GO:0005524 GO:GO:0005737 GO:GO:0006468 GO:GO:0006897 GO:GO:0007623 GO:GO:0008360 GO:GO:0016055 GO:GO:0018105 GO:GO:0030178 GO:GO:0030529 GO:GO:0034613 GO:GO:0044822 GO:GO:0090263 MGI_trans_name:Csnk1e-004 Vega_translation:217322 Vega_translation:OTTMUSP00000037969 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0016301 goslim_goa:GO:0043167 OTTP:OTTMUSP00000037969 OTTT:OTTMUST00000073383 UniParc:UPI00015F3B24
definition	note : transcript_id=ENSMUST00000135519 protein_id : ENSMUSP00000122135 translation : MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEY

name	Csnk1e (ENSMUSG00000022433) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Csnk1e-011 Vega_transcript:OTTMUST00000074121 Uniprot/SPTREMBL:A9J9D8 EMBL:AL591913 GO:GO:0004674 GO:GO:0005524 GO:GO:0005737 GO:GO:0006468 GO:GO:0006897 GO:GO:0007623 GO:GO:0008360 GO:GO:0016055 GO:GO:0018105 GO:GO:0030178 GO:GO:0030529 GO:GO:0034613 GO:GO:0044822 GO:GO:0090263 MGI_trans_name:Csnk1e-011 Vega_translation:217323 Vega_translation:OTTMUSP00000038471 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0016301 goslim_goa:GO:0043167 OTTP:OTTMUSP00000038471 OTTT:OTTMUST00000074121 UniParc:UPI0001614281
definition	note : transcript_id=ENSMUST00000156043 protein_id : ENSMUSP00000116593 translation : MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQ

name
type	misc_feature
link
xref
definition	note : contig AL591913.14 1..194812(-1)

name	Csnk1e (ENSMUSG00000022433)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073386 Vega_transcript:OTTMUST00000073386 MGI_trans_name:Csnk1e-007 OTTT:OTTMUST00000073386
definition	note : retained_intron note : transcript_id=ENSMUST00000156513

name	Csnk1e (ENSMUSG00000022433)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073387 Vega_transcript:OTTMUST00000073387 MGI_trans_name:Csnk1e-008 OTTT:OTTMUST00000073387
definition	note : retained_intron note : transcript_id=ENSMUST00000137028

name	Csnk1e (ENSMUSG00000022433)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073385 Vega_transcript:OTTMUST00000073385 MGI_trans_name:Csnk1e-006 OTTT:OTTMUST00000073385
definition	note : retained_intron note : transcript_id=ENSMUST00000136003

name	Gm16059 (ENSMUSG00000085802)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073379 Vega_transcript:OTTMUST00000073379 Clone_based_vega_transcript:RP23-120A4.2-001 MGI_trans_name:Gm16059-001 OTTT:OTTMUST00000073379 RNACentral:URS00007737DE
definition	note : antisense note : transcript_id=ENSMUST00000135583

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Csnk1e (ENSMUSG00000022433)
Transcript ID	ENSMUST00000135519

Reports
substitution
cSNPs	1
Insertion	20
Deletion	22
SNPs	+1kb 79442632(c.-3785C>A), 79443087(c.-4240T>C), 79443329(c.-4482C>T), 79443791(c.-4944C>T), 79443814(c.-4967G>A), 79443883(c.-5036T>C), 79444105(c.-5258T>C), 79444141(c.-5294G>A), 79444180(c.-5333G>A), 79444238(c.-5391C>G), 79444472(c.-5625A>T), 79444478(c.-5631C>A), 79444622(c.-5775A>G), 79444674(c.-5827A>C), 79444679(c.-5832G>C), 79444680(c.-5833G>C), 79444782(c.-5935T>C), 79444945(c.-6098C>T), 79445109(c.-6262T>C), 79445360(c.-6513G>A), 79445539(c.-6692A>G), 79445566(c.-6719G>A), 79445587(c.-6740A>C), 79445595(c.-6748A>T), 79446185(c.-7338C>A), 79446212(c.-7365G>A), 79446587(c.-7740C>T), 79446736(c.-7889C>T), 5'UTR CDS 79438841(c.7T>C), 3'UTR INTRON 79426790(c.337-303C>T), 79426988(c.337-501A>G), 79427258(c.337-771T>C), 79428005(c.337-1518G>A), 79429368(c.336+344T>A), 79429423(c.336+289G>A), 79429424(c.336+288G>A), 79429443(c.336+269A>G), 79429455(c.336+257C>G), 79429528(c.336+184A>G), 79429558(c.336+154G>A), 79429593(c.336+119T>A), 79429631(c.336+81G>A), 79429693(c.336+19T>C), 79429952(c.188-92A>G), 79429955(c.188-95A>G), 79430212(c.77-47C>T), 79430219(c.77-54G>A), 79430271(c.77-106T>C), 79430399(c.77-234T>C), 79430627(c.77-462G>C), 79430712(c.77-547T>C), 79430824(c.77-659G>T), 79431438(c.77-1273C>T), 79431727(c.77-1562T>C), 79432532(c.77-2367C>T), 79432989(c.77-2824G>T), 79433592(c.77-3427A>C), 79434231(c.77-4066T>C), 79434497(c.76+4275C>T), 79434502(c.76+4270T>A), 79434512(c.76+4260A>T), 79434679(c.76+4093G>A), 79434691(c.76+4081A>G), 79435005(c.76+3767T>C), 79435046(c.76+3726T>G), 79435167(c.76+3605T>C), 79435633(c.76+3139G>C), 79435825(c.76+2947T>C), 79435905(c.76+2867G>A), 79436707(c.76+2065G>A), 79437241(c.76+1531G>A), 79437666(c.76+1106A>C), 79438165(c.76+607G>A), 79438965(c.-8-110T>C), 79439855(c.-8-1000T>G), 79440165(c.-8-1310G>A), 79440215(c.-8-1360T>G), 79440347(c.-9+1414T>C), 79440348(c.-9+1413C>G), 79441369(c.-9+392G>A), -1kb 79421639(c.4829C>T), 79421915(c.4553G>A), 79421942(c.4526T>C), 79422200(c.4268G>A), 79422397(c.4071A>T), 79422420(c.4048C>T), 79423012(c.3456C>T), 79423021(c.3447T>A), 79423022(c.3446C>T), 79423196(c.3272A>G), 79423213(c.3255G>A), 79423363(c.3105T>C), 79423466(c.3002C>T), 79423494(c.2974A>G), 79423772(c.2696T>G), 79423817(c.2651C>T), 79423845(c.2623C>T), 79423864(c.2604T>C), 79424154(c.2314C>T), 79424172(c.2296C>T), 79424444(c.2024G>A), 79424830(c.1638C>T), 79425109(c.1359T>C), 79426018(c.450A>G), 79426030(c.438G>A), 79426060(c.408C>T), 79426115(c.353G>C), 79426206(c.262C>T),
Insertions	+1kb 79441940 (c.-3094dupG), 79442230 (c.-3384dupT), 79443821 (c.-4978_-4975dupGTGT), 79444574 (c.-5728_-5727insC), 79445802 (c.-6956_-6955insTT), 79446326 (c.-7480_-7479insG), 5'UTR CDS 3'UTR INTRON 79428398 (c.336+1313dupC), 79428774 (c.336+936_336+937dupTT), 79429868 (c.188-10_188-9dupTC), 79429878 (c.188-19_188-18insTC), 79430379 (c.77-215_77-214insT), 79430383 (c.77-219_77-218insT), 79431740 (c.77-1579_77-1576dupACAC), 79431955 (c.77-1791_77-1790insGTGTG), 79434278 (c.77-4114_77-4113insTTAA), 79436121 (c.76+2650_76+2651insGC), 79439828 (c.-8-974_-8-973insG), 79439878 (c.-8-1024_-8-1023insCCCCCC), -1kb 79421832 (c.4635_4636insATACCC), 79422200 (c.4266_4267dupTT),
Deletions	+1kb 79444767 (c.-5922_-5921delTT), 79445140 (c.-6294delA), 79445182 (c.-6336delG), 79446326 (c.-7480delT), 79446331 (c.-7487_-7485delGCG), 79446550 (c.-7704delG), 79446761 (c.-7915delA), 5'UTR CDS 3'UTR INTRON 79427157 (c.337-672_337-671delTT), 79427619 (c.337-1133delA), 79429660 (c.336+49_336+51delTCT), 79429927 (c.188-69_188-68delTC), 79429947 (c.188-89_188-88delGG), 79430358 (c.77-197_77-194delCCCA), 79434641 (c.76+4130delC), 79434644 (c.76+4120_76+4127delCCTCCGCC), 79435307 (c.76+3464delG), 79436999 (c.76+1768_76+1772delTGTGA), 79438143 (c.76+628delA), 79438229 (c.76+542delC), 79440631 (c.-9+1124_-9+1129delGGGGGT), -1kb 79422643 (c.3824delC), 79423389 (c.3076_*3078delTCT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	79438841 (p.Leu3Leu),
non-synonymous substitutions
B6 transcript (ENSMUST00000135519)	MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQ GGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEY
MSMv4 transcript	MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQ GGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEY
homology	100.00 (118 / 118)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Csnk1e (ENSMUSG00000022433)
Transcript ID	ENSMUST00000135519


..........GTGTGTGTAGAGAGAGAATGTAGGTGTGTCATAAGTTGGAGCTTTGCATG
ACCCACTGTAAATATCATTTTAATAGCCTTGTGCTGGGACCTTCCATGGTGGAGCTGGAA
GCTGGTGGGAAGCCTTCATTAACTCTCCCATGACCTGGGAAGGCTATGGTCCTTCTTCCT
CGTTTGCAGTTAAGGAAATTCAGGCATTGTCTGGGGGATGACTTTGTTGAATGAGCACCT
CTGGGTCCCTGACTCACGTGTGAGTTCTTGGTGAGGGGCAGGGGGCTCAATGGGTGAAAC
TACGTTGGAATCTGAGGGACTGTCACAGTGGATCTGAACGGCAGAGGACAGAGCAAAGAA
AAGTGTCTGCCTGGAGTTTTCTCTGACCACACATCCTTGGTCCTTGTCCACGCCCCTCAG
TCCCTATGCTTTATTCCCAAAGCCCCTGGCCAGTGTTCTCTACAGCCTTCAGGCTACTGA
GCCCTAAATCTCTTTTGCAGTGCCAGGAGTCTCAGCTGATTCTCTCGGGGGTCCCCGCAG
CTTTGGCTGGAGATAGGGCAAGGCCTGAGTATAGGAAATCTTAGTTTTGTGTGCCCCTCA
CCCAGGGTGGCAGCGTCAGAACACGCTCTCCGGGGGCTGCGGGCCCTTTAAATCCTCCGG
GGCGGCGGCGGCGGGCGGGGGATGACATCAGCGGGCGGGCCCGGGGCTCAATGGGAACCG
CGGGGACGCGCGCGCGGGTAGGGAGCGCGCGAGCCGGCGGCGGGGGCGGGCGGCGGGAGG
CGGCGGAGCGCGGAGCCTGAGCCCGGCCGGGCCGAGCGCAGCGCAGCGGGCCGGGGAGAG
GCTGGCGCGCCCGCGGCCCGGCGAATCCTCTGGCATCCGCCCCGGCGGCCGCCCCGGCGC
GGTGAGCATCGGGGGCCGGGGAAGCGGGGTTCCCTCCGCCTCTTTGTGTTTTCTTTTTGC
GCGAGCGCGGGGCGGACACGCGCATCCGCGCAGGGCTGGGGGCGCCGCCC
GTGAGGACAAAGGCGCGGCCGGGGACGCGGAGGGGACGGGCGCTTCGCAGGCCGCCGG
GTGCACCGAGGCGGCCCCGGGTTGG..........CTGTTTCTGCTTCTCCCGCAGCAAG
GTTGAAGCATGGAGCTGCGTGTGGGAAATAAGTATCGCCTGGGCCGAAAGATCGGCAGTGGCTCCTTTGGAGACATCTACCTGG
GTAAGTAGCTAGGCCTCCAGCTGTG..........CCTTTACCTCCTCTGACTCGGGCAG
GTGCCAACATTGCCTCTGGTGAGGAAGTAGCCATCAAGCTCGAATGTGTGAAGACGAAACATCCCCAGCTCCACATCGAGAGCAAGTTCTACAAGATGATGCAGGGCGGAG
GTGAGGCAGGGATGGTGCTGGGAGC..........GACCGAGTCTCTCTCTCGGGCCCAG
TGGGGATCCCGTCCATCAAGTGGTGCGGGGCTGAGGGAGACTATAACGTGATGGTCATGGAGCTGCTGGGGCCCAGCCTGGAGGACCTCTTCAACTTCTGTTCCCGGAAGTTCAGCCTCAAGACGGTGCTGTTGCTGGCCGACCAGATG
GTGAGTCCCCACCCCTGCCGTTGTT..........TGCTGTGTGTCCTTCCCTCCCTCAG
ATCAGCCGCATCGAGTACAT
ACACTCCAAGAACTTCATCCACCGGGATGTGAAGCCCGACAACTTCCTCATGGGCCTGGG
GAAGAAAGGCAACCTGGTGTACATCATTGACTTCGGCCTGGCCAAGAAGTACCGCGATGC
CCGCACACACCAGCATATTCCCTACCGGGAAAACAAGAACCTGACCGGCACTGCCCGCTA
TGCCTCTATCAACACCCACCTGGGCATTGGTGAGTGAACTGAGCCGGAGCACGCATGCTG
TGGCCACTGGCCAGGATGGGCTTATGTCCCTACCTGAGTTGAAGACCCCAGGGTCCTTCT
CTTCTGGAGACCCTCATTGAGAAGATTCTCCACTCTGTCTGGCCCAGGCCTGCACTTGTT
TCATATGGACCCCTTCATAAACAGAGTGGTGTATTTGGCCTACTGGCTGTTTCCTTGAGT
GGGTGGCAGTTTCTCACATGTATGTCTGCGAAACGCAAGCCCAGGGGTTTAACACGGCCC
CTGCAGTGCATGCAGCTGAATGAATTCTGGAGGTGCTTTTGACTCCAGCCATCGTGTGAG
CCCTAAACACGAGACAGGCCAGGCAAGGGGGCGGCGGTGCCCACACACAGTTGTTGAGTG
ACATAGCACCTGGGCTGGAAAAACTGGCTGGAACAGACATGAGAAAGTTCTGCCTGGGGC
AATCCAGAGAAGGAGAAGGAGGAGGGTGGGTGCTAGTTATAACAGGAAGCCAGTGGGTAC
CATGGAGGGGGAGGGCAGGTGTGGGGCATGGTGAGAAACGCAGCCTGACTGGCCCCTTGA
CCTCCTGACCTGTGCAGAGCAAAGCCGTCGAGATGACCTAGAGAGCTTGGGCTATGTGCT
CATGTACTTCAACCTGGGCTCCCTGCCCTGGCAGGGCCTCAAAGCAGCCACCAAGCGTCA
GAAGTACGAGCGGATTAGCGAGAAGAAGATGTCAACGCCAATCGAGGTCCTCTGCAAAGG
CTACCCCTGTGAGTAGCCTGTGGGGATGGCATTTCCTTCT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GTGTGTGTAGAGAGAGAATGTAGGTGTGTCATAAGTTGGAGCTTTGCATG ACCCACTGTAAATATCATTTTAATAGCCTTGTGCTGGGACCTTCCATGGTGGAGCTGGAA GCTGGTGGGAAGCCTTCATTAACTCTCCCATGACCTGGGAAGGCTATGGTCCTTCTTCCT CGTTTGCAGTTAAGGAAATTCAGGCATTGTCTGGGGGATGACTTTGTTGAATGAGCACCT CTGGGTCCCTGACTCACGTGTGAGTTCTTGGTGAGGGGCAGGGGGCTCAATGGGTGAAAC TACGTTGGAATCTGAGGGACTGTCACAGTGGATCTGAACGGCAGAGGACAGAGCAAAGAA AAGTGTCTGCCTGGAGTTTTCTCTGACCACACATCCTTGGTCCTTGTCCACGCCCCTCAG TCCCTATGCTTTATTCCCAAAGCCCCTGGCCAGTGTTCTCTACAGCCTTCAGGCTACTGA GCCCTAAATCTCTTTTGCAGTGCCAGGAGTCTCAGCTGATTCTCTCGGGGGTCCCCGCAG CTTTGGCTGGAGATAGGGCAAGGCCTGAGTATAGGAAATCTTAGTTTTGTGTGCCCCTCA CCCAGGGTGGCAGCGTCAGAACACGCTCTCCGGGGGCTGCGGGCCCTTTAAATCCTCCGG GGCGGCGGCGGCGGGCGGGGGATGACATCAGCGGGCGGGCCCGGGGCTCAATGGGAACCG CGGGGACGCGCGCGCGGGTAGGGAGCGCGCGAGCCGGCGGCGGGGGCGGGCGGCGGGAGG CGGCGGAGCGCGGAGCCTGAGCCCGGCCGGGCCGAGCGCAGCGCAGCGGGCCGGGGAGAG GCTGGCGCGCCCGCGGCCCGGCGAATCCTCTGGCATCCGCCCCGGCGGCCGCCCCGGCGC GGTGAGCATCGGGGGCCGGGGAAGCGGGGTTCCCTCCGCCTCTTTGTGTTTTCTTTTTGC GCGAGCGCGGGGCGGACACGCGCATCCGCGCAGGGCTGGGGGCGCCGCCC
1	EXON 1	79441761	79441818	-	-	58	GTGAGGACAAAGGCGCGGCCGGGGACGCGGAGGGGACGGGCGCTTCGCAGGCCGCCGG
	INTRON 1 - 2	79438856	79441760			2905	GTGCACCGAGGCGGCCCCGGGTTGG..........CTGTTTCTGCTTCTCCCGCAGCAAG
2	EXON 2	79438772	79438855	-	1	84	GTTGAAGCATGGAGCTGCGTGTGGGAAATAAGTATCGCCTGGGCCGAAAGATCGGCAGTG GCTCCTTTGGAGACATCTACCTGG
	INTRON 2 - 3	79430166	79438771			8606	GTAAGTAGCTAGGCCTCCAGCTGTG..........CCTTTACCTCCTCTGACTCGGGCAG
3	EXON 3	79430055	79430165	1	1	111	GTGCCAACATTGCCTCTGGTGAGGAAGTAGCCATCAAGCTCGAATGTGTGAAGACGAAAC ATCCCCAGCTCCACATCGAGAGCAAGTTCTACAAGATGATGCAGGGCGGAG
	INTRON 3 - 4	79429861	79430054			194	GTGAGGCAGGGATGGTGCTGGGAGC..........GACCGAGTCTCTCTCTCGGGCCCAG
4	EXON 4	79429712	79429860	1	0	149	TGGGGATCCCGTCCATCAAGTGGTGCGGGGCTGAGGGAGACTATAACGTGATGGTCATGG AGCTGCTGGGGCCCAGCCTGGAGGACCTCTTCAACTTCTGTTCCCGGAAGTTCAGCCTCA AGACGGTGCTGTTGCTGGCCGACCAGATG
	INTRON 4 - 5	79426488	79429711			3224	GTGAGTCCCCACCCCTGCCGTTGTT..........TGCTGTGTGTCCTTCCCTCCCTCAG
5	EXON 5	79426468	79426487	0	-	20	ATCAGCCGCATCGAGTACAT
	3' upstream sequence						ACACTCCAAGAACTTCATCCACCGGGATGTGAAGCCCGACAACTTCCTCATGGGCCTGGG GAAGAAAGGCAACCTGGTGTACATCATTGACTTCGGCCTGGCCAAGAAGTACCGCGATGC CCGCACACACCAGCATATTCCCTACCGGGAAAACAAGAACCTGACCGGCACTGCCCGCTA TGCCTCTATCAACACCCACCTGGGCATTGGTGAGTGAACTGAGCCGGAGCACGCATGCTG TGGCCACTGGCCAGGATGGGCTTATGTCCCTACCTGAGTTGAAGACCCCAGGGTCCTTCT CTTCTGGAGACCCTCATTGAGAAGATTCTCCACTCTGTCTGGCCCAGGCCTGCACTTGTT TCATATGGACCCCTTCATAAACAGAGTGGTGTATTTGGCCTACTGGCTGTTTCCTTGAGT GGGTGGCAGTTTCTCACATGTATGTCTGCGAAACGCAAGCCCAGGGGTTTAACACGGCCC CTGCAGTGCATGCAGCTGAATGAATTCTGGAGGTGCTTTTGACTCCAGCCATCGTGTGAG CCCTAAACACGAGACAGGCCAGGCAAGGGGGCGGCGGTGCCCACACACAGTTGTTGAGTG ACATAGCACCTGGGCTGGAAAAACTGGCTGGAACAGACATGAGAAAGTTCTGCCTGGGGC AATCCAGAGAAGGAGAAGGAGGAGGGTGGGTGCTAGTTATAACAGGAAGCCAGTGGGTAC CATGGAGGGGGAGGGCAGGTGTGGGGCATGGTGAGAAACGCAGCCTGACTGGCCCCTTGA CCTCCTGACCTGTGCAGAGCAAAGCCGTCGAGATGACCTAGAGAGCTTGGGCTATGTGCT CATGTACTTCAACCTGGGCTCCCTGCCCTGGCAGGGCCTCAAAGCAGCCACCAAGCGTCA GAAGTACGAGCGGATTAGCGAGAAGAAGATGTCAACGCCAATCGAGGTCCTCTGCAAAGG CTACCCCTGTGAGTAGCCTGTGGGGATGGCATTTCCTTCT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Csnk1e (ENSMUSG00000022433)
Transcript ID	ENSMUST00000135519

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 118 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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