MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Uxs1 (ENSMUSG00000057363)

Cross Reference

EMBL	AC159092
GO	GO:0005739, GO:0008152, GO:0042803, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Uxs1-006
OTTP	OTTMUSP00000039359
OTTT	OTTMUST00000075198
UniParc	UPI000164C5B3
Uniprot/SPTREMBL	D6RIQ1
Vega_transcript	OTTMUST00000075198, Uxs1-006
Vega_translation	179161, OTTMUSP00000039359

Definition

protein_id:ENSMUSP00000121869
translation:

MVSKGLLRLVSSVNRRRMKLLLGIALFAYAASDVLYSSHH

Chromosome

Length
Position(start - end)

10771
43816936 - 43827708

Orient to Chromosome

minus

Link

Location : (1:43816936-43827708)
/

Detail Map

name	Uxs1 (ENSMUSG00000057363)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Uxs1 note : UDP-glucuronate decarboxylase 1 [Source:MGI Symbol;Acc:MGI:1915133]

name	Gm16103 (ENSMUSG00000090243)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm16103 note : predicted gene 16103 [Source:MGI Symbol;Acc:MGI:3802086]

name	Uxs1 (ENSMUSG00000057363)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000126008

name	Uxs1 (ENSMUSG00000057363)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000076997

name	Uxs1 (ENSMUSG00000057363)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000139451

name	Uxs1 (ENSMUSG00000057363)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000153317

name	Uxs1 (ENSMUSG00000057363)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000136704

name	Uxs1 (ENSMUSG00000057363)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000128261

name	Uxs1 (ENSMUSG00000057363) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS35551.1 Uniprot/SWISSPROT:Q91XL3 RefSeq_peptide:NP_080706 RefSeq_mRNA:NM_026430.3 RefSeq_peptide_predicted:XP_006496290.1 Vega_transcript:OTTMUST00000075193 Vega_transcript:Uxs1-001 UCSC:uc007avq.1 Fantom:1810064C08 Fantom:I830067G12 EMBL:AF399958 EMBL:AK075806 EMBL:AK152376 EMBL:BC037049 GO:GO:0005739 GO:GO:0005794 GO:GO:0016021 GO:GO:0032580 GO:GO:0033320 GO:GO:0042803 GO:GO:0042803 GO:GO:0048040 GO:GO:0048040 GO:GO:0051262 GO:GO:0051262 GO:GO:0070062 GO:GO:0070062 GO:GO:0070403 GO:GO:0070403 MGI_trans_name:Uxs1-001 Vega_translation:179157 Vega_translation:OTTMUSP00000039355 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005794 goslim_goa:GO:0006461 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0016829 goslim_goa:GO:0022607 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0044281 goslim_goa:GO:0065003 protein_id:AAH37049.1 protein_id:AAK85410.1 protein_id:BAC35974.1 protein_id:BAE31165.1 OTTP:OTTMUSP00000039355 OTTT:OTTMUST00000075193 UniParc:UPI000002953C
definition	note : transcript_id=ENSMUST00000126008 protein_id : ENSMUSP00000119939 translation : MVSKGLLRLVSSVNRRRMKLLLGIALFAYAASVWGNFVNMRSIQENGELKIESKIEEIVEPLREKIRDLEKSFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARVKKGRTRHS

name	Uxs1 (ENSMUSG00000057363) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000075194 Vega_transcript:Uxs1-002 Uniprot/SPTREMBL:G5E8H4 UCSC:uc007avq.1 EMBL:AC159092 EMBL:CH466589 GO:GO:0005739 GO:GO:0008152 GO:GO:0042803 GO:GO:0048040 GO:GO:0051262 GO:GO:0070062 GO:GO:0070403 MGI_trans_name:Uxs1-002 Vega_translation:179158 Vega_translation:OTTMUSP00000039356 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006461 goslim_goa:GO:0008150 goslim_goa:GO:0016829 goslim_goa:GO:0022607 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0065003 protein_id:EDK96903.1 OTTP:OTTMUSP00000039356 OTTT:OTTMUST00000075194 UniParc:UPI000154CD9A
definition	note : transcript_id=ENSMUST00000076997 protein_id : ENSMUSP00000076259 translation : MVSKGLLRLVSSVNRRRMKLLLGIALFAYAASVWGNFVNMRSIQENGELKIESKIEEIVEPLREKIRDLEKSFTQKYPPVKFLSEKDRKRILAGREMWNTGLAMRTSS

name	Uxs1 (ENSMUSG00000057363) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000075195 Vega_transcript:Uxs1-003 Uniprot/SPTREMBL:D3YUF9 UCSC:uc007avq.1 EMBL:AC159092 GO:GO:0005739 GO:GO:0008152 GO:GO:0042803 GO:GO:0048040 GO:GO:0051262 GO:GO:0070062 GO:GO:0070403 MGI_trans_name:Uxs1-003 Vega_translation:179159 Vega_translation:OTTMUSP00000039357 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006461 goslim_goa:GO:0008150 goslim_goa:GO:0016829 goslim_goa:GO:0022607 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0065003 OTTP:OTTMUSP00000039357 OTTT:OTTMUST00000075195 UniParc:UPI000164C5B1
definition	note : transcript_id=ENSMUST00000139451 protein_id : ENSMUSP00000118468 translation : MVSKGLLRLVSSVNRRRMKLLLGIALFAYAASVWGNFVNMSFLLNRSIQENGELKIESKIEEIVEPLREKIRDLEKSFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE

name	Uxs1 (ENSMUSG00000057363) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000075199 Vega_transcript:Uxs1-007 MGI_trans_name:Uxs1-007 Vega_translation:179160 Vega_translation:OTTMUSP00000072848 OTTP:OTTMUSP00000072848 OTTT:OTTMUST00000075199 UniParc:UPI0006454918
definition	note : transcript_id=ENSMUST00000153317 protein_id : ENSMUSP00000144114 translation : MVSKGLLRLVSSVNRRRMKLLLGIALFAYAAFDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACY

name	Uxs1 (ENSMUSG00000057363) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000075198 Vega_transcript:Uxs1-006 Uniprot/SPTREMBL:D6RIQ1 EMBL:AC159092 GO:GO:0005739 GO:GO:0008152 GO:GO:0042803 GO:GO:0048040 GO:GO:0051262 GO:GO:0070062 GO:GO:0070403 MGI_trans_name:Uxs1-006 Vega_translation:179161 Vega_translation:OTTMUSP00000039359 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006461 goslim_goa:GO:0008150 goslim_goa:GO:0016829 goslim_goa:GO:0022607 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0065003 OTTP:OTTMUSP00000039359 OTTT:OTTMUST00000075198 UniParc:UPI000164C5B3
definition	note : transcript_id=ENSMUST00000136704 protein_id : ENSMUSP00000121869 translation : MVSKGLLRLVSSVNRRRMKLLLGIALFAYAASDVLYSSHH

name	Uxs1 (ENSMUSG00000057363) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000075196 Vega_transcript:Uxs1-004 Uniprot/SPTREMBL:D3Z411 EMBL:AC159092 GO:GO:0005739 GO:GO:0008152 GO:GO:0042803 GO:GO:0048040 GO:GO:0051262 GO:GO:0070062 GO:GO:0070403 MGI_trans_name:Uxs1-004 Vega_translation:179162 Vega_translation:OTTMUSP00000039358 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006461 goslim_goa:GO:0008150 goslim_goa:GO:0016829 goslim_goa:GO:0022607 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0065003 OTTP:OTTMUSP00000039358 OTTT:OTTMUST00000075196 UniParc:UPI000164C5B2
definition	note : transcript_id=ENSMUST00000128261 protein_id : ENSMUSP00000116719 translation : MVSKGLLRLVSSVNRRRMKLLLGIALFAYAASVWGNFVNMRSIQENGELKIESKIEEIVEPLREKIRDLEKSLLNSASAVWMTLSTTVFLVPTILALGLFLCSFTQKYPPVKFLSEKDRKRILITGG

name
type	misc_feature
link
xref
definition	note : contig AC159092.11 1..162164(-1)

name	Uxs1 (ENSMUSG00000057363)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000075200 Vega_transcript:OTTMUST00000075200 MGI_trans_name:Uxs1-008 OTTT:OTTMUST00000075200
definition	note : processed_transcript note : transcript_id=ENSMUST00000136179

name	Uxs1 (ENSMUSG00000057363)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000075197 Vega_transcript:OTTMUST00000075197 MGI_trans_name:Uxs1-005 OTTT:OTTMUST00000075197
definition	note : processed_transcript note : transcript_id=ENSMUST00000134860

name	Gm16103 (ENSMUSG00000090243)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000075192 Vega_transcript:OTTMUST00000075192 Clone_based_vega_transcript:AC159092.3-001 MGI_trans_name:Gm16103-001 OTTT:OTTMUST00000075192
definition	note : processed_pseudogene note : transcript_id=ENSMUST00000163003

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Uxs1 (ENSMUSG00000057363)
Transcript ID	ENSMUST00000136704

Reports
substitution
cSNPs	0
Insertion	16
Deletion	28
SNPs	+1kb 43828112(c.-404C>T), 43828217(c.-509A>C), 43828395(c.-687C>G), 43828400(c.-692C>T), 43828555(c.-847T>G), 43828663(c.-955A>G), 43828683(c.-975C>T), 43828716(c.-1008A>T), 43828860(c.-1152T>A), 43828879(c.-1171C>T), 43828980(c.-1272T>C), 43829018(c.-1310A>G), 43829033(c.-1325C>T), 43829147(c.-1439A>G), 43829294(c.-1586A>G), 43829322(c.-1614C>T), 43829328(c.-1620C>T), 43829343(c.-1635G>A), 43829346(c.-1638C>G), 43829416(c.-1708G>A), 43829418(c.-1710A>G), 43829450(c.-1742T>G), 43829562(c.-1854T>C), 43829790(c.-2082C>A), 43829981(c.-2273G>C), 43829997(c.-2289C>G), 43830090(c.-2382C>A), 43830133(c.-2425T>G), 43830145(c.-2437A>G), 43830178(c.-2470T>C), 43830296(c.-2588T>C), 43830318(c.-2610G>A), 43830347(c.-2639C>T), 43830373(c.-2665T>C), 43830501(c.-2793C>A), 43830554(c.-2846A>G), 43830557(c.-2849G>A), 43830630(c.-2922C>T), 43830710(c.-3002C>G), 43830744(c.-3036A>T), 43830749(c.-3041G>A), 43830783(c.-3075A>T), 43830785(c.-3077C>T), 43830789(c.-3081C>G), 43830874(c.-3166C>T), 43830907(c.-3199A>T), 43830928(c.-3220T>C), 43830951(c.-3243C>T), 43831006(c.-3298C>T), 43831049(c.-3341G>T), 43831068(c.-3360G>T), 43831080(c.-3372C>T), 43831096(c.-3388C>T), 43831100(c.-3392G>C), 43831308(c.-3600C>T), 43831441(c.-3733G>T), 43831575(c.-3867G>T), 43831589(c.-3881G>A), 43831905(c.-4197T>G), 43831927(c.-4219C>T), 43831928(c.-4220G>A), 43831946(c.-4238A>G), 43832389(c.-4681G>A), 5'UTR 43827741(c.-33G>A), CDS 3'UTR 43816929(c.7C>G), INTRON 43780750(c.243-581T>C), 43780937(c.243-768A>G), 43781099(c.243-930A>G), 43781128(c.243-959C>T), 43781202(c.243-1033G>A), 43781262(c.243-1093A>C), 43781286(c.243-1117C>T), 43781354(c.243-1185G>A), 43781410(c.243-1241A>G), 43781468(c.243-1299C>G), 43782024(c.243-1855C>T), 43782183(c.243-2014C>G), 43782343(c.243-2174C>T), 43782353(c.243-2184A>C), 43782461(c.243-2292A>G), 43782893(c.243-2724C>T), 43783084(c.243-2915G>C), 43783310(c.243-3141G>A), 43783447(c.243-3278C>T), 43783448(c.243-3279G>A), 43783923(c.243-3754C>G), 43783925(c.243-3756G>A), 43785058(c.243-4889A>T), 43786269(c.243-6100T>C), 43786489(c.243-6320C>T), 43786653(c.243-6484G>A), 43786680(c.243-6511T>C), 43786823(c.243-6654G>T), 43787141(c.243-6972T>C), 43787255(c.243-7086T>C), 43787366(c.243-7197A>G), 43787512(c.243-7343G>T), 43787514(c.243-7345T>G), 43787778(c.243-7609A>C), 43788657(c.243-8488G>A), 43788852(c.242+8393G>T), 43789142(c.242+8103C>T), 43791196(c.242+6049G>A), 43791516(c.242+5729A>C), 43791673(c.242+5572C>T), 43791765(c.242+5480A>C), 43792417(c.242+4828G>T), 43793231(c.242+4014C>T), 43793896(c.242+3349T>C), 43793955(c.242+3290C>T), 43794474(c.242+2771A>G), 43794856(c.242+2389G>T), 43795040(c.242+2205G>A), 43795202(c.242+2043G>A), 43795563(c.242+1682A>G), 43795660(c.242+1585A>T), 43795817(c.242+1428T>C), 43795904(c.242+1341C>T), 43796278(c.242+967G>A), 43797238(c.242+7T>G), 43797843(c.182-538C>G), 43797995(c.182-690A>G), 43798242(c.182-937G>A), 43798517(c.182-1212A>G), 43798533(c.182-1228C>T), 43798641(c.182-1336C>T), 43798673(c.182-1368A>G), 43798704(c.182-1399A>G), 43798734(c.182-1429C>T), 43798817(c.182-1512G>A), 43798829(c.182-1524A>G), 43798832(c.182-1527T>G), 43799012(c.182-1707T>C), 43799039(c.182-1734T>C), 43799052(c.182-1747A>G), 43799071(c.182-1766G>A), 43799099(c.182-1794C>T), 43799140(c.182-1835C>T), 43799265(c.182-1960G>T), 43799500(c.182-2195G>A), 43799512(c.182-2207A>G), 43799570(c.182-2265G>C), 43799642(c.182-2337G>A), 43799687(c.182-2382G>A), 43800632(c.182-3327T>C), 43800759(c.182-3454A>T), 43800770(c.182-3465C>T), 43800775(c.182-3470C>G), 43801314(c.182-4009G>A), 43801638(c.181+3715C>T), 43801934(c.181+3419A>C), 43802425(c.181+2928A>G), 43802953(c.181+2400C>T), 43803784(c.181+1569C>T), 43803820(c.181+1533C>T), 43804595(c.181+758C>T), 43804928(c.181+425A>T), 43806068(c.89-394G>T), 43806402(c.89-728C>T), 43806898(c.88+452A>T), 43808062(c.61-685T>A), 43808138(c.61-761T>C), 43808588(c.61-1211A>C), 43808592(c.61-1215A>C), 43808806(c.61-1429C>T), 43809260(c.61-1883G>A), 43809850(c.61-2473C>T), 43809986(c.61-2609A>G), 43810287(c.61-2910A>T), 43810883(c.61-3506C>T), 43811658(c.61-4281A>T), 43811660(c.61-4283G>C), 43812299(c.60+4577T>G), 43812324(c.60+4552T>C), 43812350(c.60+4526C>A), 43813192(c.60+3684G>A), 43813243(c.60+3633A>C), 43813332(c.60+3544C>T), 43813335(c.60+3541G>A), 43813336(c.60+3540T>C), 43813345(c.60+3531G>A), 43813797(c.60+3079A>G), 43813805(c.60+3071T>C), 43813845(c.60+3031T>G), 43814203(c.60+2673C>T), 43815227(c.60+1649T>A), 43815412(c.60+1464A>G), 43815524(c.60+1352T>C), 43815590(c.60+1286A>G), 43816533(c.60+343T>C), 43816835(c.60+41A>G), 43817245(c.95-281T>G), 43817558(c.95-594G>A), 43817775(c.95-811T>C), 43818177(c.95-1213G>A), 43818327(c.95-1363C>T), 43818417(c.95-1453A>G), 43818914(c.95-1950G>A), 43818962(c.95-1998C>G), 43819648(c.95-2684T>C), 43819890(c.95-2926T>C), 43821139(c.95-4175G>A), 43821568(c.95-4604T>A), 43821569(c.95-4605T>C), 43821728(c.95-4764G>A), 43823180(c.94+4435C>T), 43823192(c.94+4423C>G), 43823744(c.94+3871A>G), 43825355(c.94+2260T>C), 43826022(c.94+1593T>C), 43826028(c.94+1587C>A), 43827512(c.94+103A>C), 43827544(c.94+71A>G), -1kb 43775479(c.41457A>G), 43775980(c.40956G>A), 43776053(c.40883C>T), 43776158(c.40778G>A), 43776172(c.40764A>G), 43776376(c.40560A>G), 43776401(c.40535C>T), 43776497(c.40439A>C), 43776498(c.40438A>T), 43776500(c.40436A>T), 43776605(c.40331C>G), 43776627(c.40309T>C), 43776663(c.40273G>A), 43776833(c.40103C>T), 43776926(c.40010C>T), 43777082(c.39854T>C), 43777191(c.39745C>T), 43777261(c.39675C>G), 43779291(c.37645C>G), 43779323(c.37613T>C), 43779528(c.37408T>C), 43779534(c.37402G>T), 43779861(c.37075T>C), 43779931(c.*37005A>C),
Insertions	+1kb 43829034 (c.-1327_-1326insCA), 43829392 (c.-1685_-1684insT), 43829534 (c.-1827_-1826insGTCT), 43829802 (c.-2095_-2094insTC), 43830928 (c.-3221_-3220insA), 43832474 (c.-4767_-4766insGTG), 5'UTR CDS 3'UTR INTRON 43804647 (c.181+705_181+706insCTTT), 43806412 (c.89-739dupT), 43815524 (c.60+1351_60+1352insCTCTCT), 43816072 (c.60+803dupT), 43816985 (c.95-22_95-21insTGTG), 43816992 (c.95-29_95-28insCAGAG), 43823153 (c.94+4461_94+4462insCTT), 43823157 (c.94+4456_94+4457dupCT), 43826080 (c.94+1534dupA), -1kb 43779005 (c.*37930dupC),
Deletions	+1kb 5'UTR CDS 3'UTR INTRON 43781104 (c.243-936delT), 43782256 (c.243-2091_243-2088delAGAG), 43790300 (c.242+6943_242+6944delCA), 43796099 (c.242+1144_242+1145delTT), 43798695 (c.182-1391delT), 43798709 (c.182-1408_182-1405delCGAG), 43801602 (c.181+3750delT), 43803024 (c.181+2323_181+2328delCTGAGT), 43803122 (c.181+2228_181+2230delTTT), 43804439 (c.181+911_181+913delTCC), 43805540 (c.137+83_137+85delCAT), 43807114 (c.88+233_88+235delCCT), 43807671 (c.61-295delT), 43807686 (c.61-310delT), 43807691 (c.61-315delT), 43808323 (c.61-950_61-947delGTTT), 43808537 (c.61-1161delC), 43808568 (c.61-1194_61-1192delACA), 43814639 (c.60+2236delG), 43814932 (c.60+1943delT), 43815655 (c.60+1220delT), 43821547 (c.95-4584delT), 43823110 (c.94+4494_94+4504delTTTACTTTTTT), 43827300 (c.94+310_94+314delGCTGT), -1kb 43775195 (c.41737_41740delTAGC), 43775384 (c.41551delT), 43776399 (c.40536delC), 43780043 (c.36886_36892delCTTTTTC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000136704)	MVSKGLLRLVSSVNRRRMKLLLGIALFAYAASDVLYSSHH*
MSMv4 transcript	MVSKGLLRLVSSVNRRRMKLLLGIALFAYAASDVLYSSHH*
homology	100.00 (41 / 41)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Uxs1 (ENSMUSG00000057363)
Transcript ID	ENSMUST00000136704


..........ATGAAAATCCAGAGTCACAGTCTCCGGTCTATGTTCTTCCCTCCTTTACC
ATGCAGACATCCCAACATTACAGTACACTTATACAATCTGAAGATGGCAGCCCTTTCTTC
ATAGGTCTTCAAGCAGCCCTCATGTTTCTATCTTTTATCAGGGTTGTTATGAATGTGAAA
CTGTCTGCCAACACTGAGTCTCATTAATATTCAAACAGCTGAGAGGAAAAGTACCTCAGA
TCTCATTGTGCTATGCTTAAGGAGAAGACATAACCAGAGCATTCTGTCTCGCTTTTGGTA
ACTATGATCAGGCAAAGTGTCTGTTGTTCTGAAATTATTCCCATACACTTTGTACCAGAA
ATGATCCCTGCTTATTTGTGCTGTTCCCACTGCAGTGTGGTTTGTCCTAAATTCCAACGA
TTAACAACCTCTTCATGATAATATACCCTTCATCTTTAAAATAAAGAAAATGAAGAGAAG
TGTTGTCGATTCACCGGCGCGTTTGGGATTTATCACTTTCCTGCCTTGCAAAAAGAACAG
CTAAGAAGGCAACTTCCTAGCCCCGCACTCATAGAAACTCAACTGTTCACTGTCAAGACA
CACCAATTACAGCAAACCAGTTCTTCATCTCCAACAGCGCGAGGCCACAGCCCAGCCGGC
TGTGTAGGACTAAGAACGCGCAAGCGCCCTGCAAGTTGCAGGCGAACTTCCGAGATCCGC
GCCAAACGTCGAACGCTACCCCAGCAGCGAAAAGGGGGCAAGCACACTGGGCTGCGCATG
CGCGCTCCGAGCCACCCACTGTGCCCACCCATCCCTGGTTGATTGACACCATCCTGAAAA
CTCAGGGATTACACTGCGCTTGCGGGGAAAAGGAGGATGAGGGCGGGGCACGGCTGTGGG
CGGAGCCGGAGGCCGGGACCCAGCCGCGCGAGCGCAGTGGTTTAGCCGGCAGGAAGCCGG
GCGCGCGGGGGTGGGGCTGGTGCACGGGGGCGGGGCTCGGGCCGCCGCGC
ATTGTGCTGCGGCTGGCCGGCACGGCAGGCCCCGGACCCGAGCGGTTCCCGGGCATGGTGAGCAAGGGGCTGTTGCGCCTTGTCTCTTCAGTCAACCGCAGGAGGATGAAGCTTCTGCTCGGCATCGCGCTGTTCGCCTACGCCGCCT
GTGAGTGCGTGCGCGGTGGGCGGGA..........TTTTTTTGTTTTTTTTCCCCCACAG
CAGATGTATTGTATTCTTCCCACCACTGAGATAGAGAACCAACCCATAGCTCATTCTTTTGTTATGGCAGCCATCCCAATGGTCCTGAG
GTAGGTGTGTAAGCTTTTAATGTTA..........ATATTTTTTCTCCTTTCTCTTGCAG
CTGTTTGGGGCAACTTTGTTAACATGAG
GTAACTGTTTTTAATTGCTTGGGTA..........AGTTCTGTAGCTTTCTGCTCAACAG
GTCTATCCAGGAAAATGGAGAACTAAAGATCGAAAGCAAGATTGAAGAG
GTCAGTCTATTTTCTGTTTTGCTTT..........AAAATTGATTTTATTCTTGTTCCAG
ATTGTTGAACCATTAAGAGAGAAAATCAGAGATTTGGAAAAAAG
GTATGTACACATTTTTTTGGTTGTT..........CCTTTTAAATCTCTTCATATTATAG
TTTTACCCAGAAATACCCGCCTGTAAAGTTTTTATCAGAAAAGGACCGGAAAAGGATTTTG
GTAAGTGTGCATACCAGATTTACAT..........ACATTCTTTCTTTTGTTTCCTTTAG
TTGACCAGATATATCATCTGGCATCTCCAGCCTCCCCACCAAACTACATGTA
CAACCCCATCAAGACACTGAAGACTAATACAATTGGAACACTAAACATGTTGGGTCAGTA
AGTTGTCCTTTTTCTTTTTTTCTTTTCTTTTCTCTTTGTGGAAATATTTTAAGAGATTTC
AAAAGTGCATAGTAGTGGGACCTTCCACCTATAATGCATATTCCAAGACTCCTGTGATTC
CCTAAACTGAGACGGTACCAAATCCTGTGATGTCTTTAGCATTAGCACTTGAACTGTGTG
TACTTAGCTTTTATACCAGTAGAGCTAGTATGTCTCTCTTTTTCTTTTATATCTACTCCA
ATATGAAATTAATTCTTACTATAGATCTTTTCACCCTCAGAATTATTATTTTTCTCTCTT
GAGTTGGGAGCATCTACTTTTTAATCTGAAGAGAGCACTTTCTGGCTTCTTGTTGATTTG
AGTCACAGAGAGTCACTGCTCTGGGGCCTTTGGGATATTAACACGTTCTTAACATACACA
TGATTCTTTTGATGCCATTACAGTCAGTCCTTGATATGACAGTGACTAATAAGTGGGTAA
TGTATACCACAAGAATATGTCTGACAAAGGGACAAATGGGTAATTCATACCATGGACATT
ATAAAGCAGGATGGCACAAGTTAATTATGTTCTTCATAACAGTGCGCAGATACCAACTGT
TTTGATGATTTTTTTAATTTAAGATTTTTGGATTGACATTGAGTATCTTACATTGGTAAT
TGGAACTTGCTCAGTCCTATGGCTGGCTCAGTCCTATGGTCTGCTGGCTTGATTATGGTA
TTTGCACCCTCCTCCACCCCTTTGTGGGTACTGTTCAGTAGTTTCAGAGTATGGCTTTTT
GACATGGGGAAGGCACCTTTCTTTCCTGAATTGTAGTAACCAGTCTTTCATGGATGGCTC
TTGTCAGTTTCCAGGGAGTGGGACAGGTACTTAATTCAAGGACCAGCTTGCTTTCCTTTT
CTTTGTCTCTGAAGCTGGTCACCAGTGTCTAGGATTATTG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ATGAAAATCCAGAGTCACAGTCTCCGGTCTATGTTCTTCCCTCCTTTACC ATGCAGACATCCCAACATTACAGTACACTTATACAATCTGAAGATGGCAGCCCTTTCTTC ATAGGTCTTCAAGCAGCCCTCATGTTTCTATCTTTTATCAGGGTTGTTATGAATGTGAAA CTGTCTGCCAACACTGAGTCTCATTAATATTCAAACAGCTGAGAGGAAAAGTACCTCAGA TCTCATTGTGCTATGCTTAAGGAGAAGACATAACCAGAGCATTCTGTCTCGCTTTTGGTA ACTATGATCAGGCAAAGTGTCTGTTGTTCTGAAATTATTCCCATACACTTTGTACCAGAA ATGATCCCTGCTTATTTGTGCTGTTCCCACTGCAGTGTGGTTTGTCCTAAATTCCAACGA TTAACAACCTCTTCATGATAATATACCCTTCATCTTTAAAATAAAGAAAATGAAGAGAAG TGTTGTCGATTCACCGGCGCGTTTGGGATTTATCACTTTCCTGCCTTGCAAAAAGAACAG CTAAGAAGGCAACTTCCTAGCCCCGCACTCATAGAAACTCAACTGTTCACTGTCAAGACA CACCAATTACAGCAAACCAGTTCTTCATCTCCAACAGCGCGAGGCCACAGCCCAGCCGGC TGTGTAGGACTAAGAACGCGCAAGCGCCCTGCAAGTTGCAGGCGAACTTCCGAGATCCGC GCCAAACGTCGAACGCTACCCCAGCAGCGAAAAGGGGGCAAGCACACTGGGCTGCGCATG CGCGCTCCGAGCCACCCACTGTGCCCACCCATCCCTGGTTGATTGACACCATCCTGAAAA CTCAGGGATTACACTGCGCTTGCGGGGAAAAGGAGGATGAGGGCGGGGCACGGCTGTGGG CGGAGCCGGAGGCCGGGACCCAGCCGCGCGAGCGCAGTGGTTTAGCCGGCAGGAAGCCGG GCGCGCGGGGGTGGGGCTGGTGCACGGGGGCGGGGCTCGGGCCGCCGCGC
1	EXON 1	43827615	43827762	-	1	148	ATTGTGCTGCGGCTGGCCGGCACGGCAGGCCCCGGACCCGAGCGGTTCCCGGGCATGGTG AGCAAGGGGCTGTTGCGCCTTGTCTCTTCAGTCAACCGCAGGAGGATGAAGCTTCTGCTC GGCATCGCGCTGTTCGCCTACGCCGCCT
	INTRON 1 - 2	43816965	43827614			10650	GTGAGTGCGTGCGCGGTGGGCGGGA..........TTTTTTTGTTTTTTTTCCCCCACAG
2	EXON 2	43816876	43816964	1	-	89	CAGATGTATTGTATTCTTCCCACCACTGAGATAGAGAACCAACCCATAGCTCATTCTTTT GTTATGGCAGCCATCCCAATGGTCCTGAG
	INTRON 2 - 3	43807378	43816875			9498	GTAGGTGTGTAAGCTTTTAATGTTA..........ATATTTTTTCTCCTTTCTCTTGCAG
3	EXON 3	43807350	43807377	-	-	28	CTGTTTGGGGCAACTTTGTTAACATGAG
	INTRON 3 - 4	43805675	43807349			1675	GTAACTGTTTTTAATTGCTTGGGTA..........AGTTCTGTAGCTTTCTGCTCAACAG
4	EXON 4	43805626	43805674	-	-	49	GTCTATCCAGGAAAATGGAGAACTAAAGATCGAAAGCAAGATTGAAGAG
	INTRON 4 - 5	43805397	43805625			229	GTCAGTCTATTTTCTGTTTTGCTTT..........AAAATTGATTTTATTCTTGTTCCAG
5	EXON 5	43805353	43805396	-	-	44	ATTGTTGAACCATTAAGAGAGAAAATCAGAGATTTGGAAAAAAG
	INTRON 5 - 6	43797306	43805352			8047	GTATGTACACATTTTTTTGGTTGTT..........CCTTTTAAATCTCTTCATATTATAG
6	EXON 6	43797245	43797305	-	-	61	TTTTACCCAGAAATACCCGCCTGTAAAGTTTTTATCAGAAAAGGACCGGAAAAGGATTTT G
	INTRON 6 - 7	43780170	43797244			17075	GTAAGTGTGCATACCAGATTTACAT..........ACATTCTTTCTTTTGTTTCCTTTAG
7	EXON 7	43780118	43780169	-	-	52	TTGACCAGATATATCATCTGGCATCTCCAGCCTCCCCACCAAACTACATGTA
	3' upstream sequence						CAACCCCATCAAGACACTGAAGACTAATACAATTGGAACACTAAACATGTTGGGTCAGTA AGTTGTCCTTTTTCTTTTTTTCTTTTCTTTTCTCTTTGTGGAAATATTTTAAGAGATTTC AAAAGTGCATAGTAGTGGGACCTTCCACCTATAATGCATATTCCAAGACTCCTGTGATTC CCTAAACTGAGACGGTACCAAATCCTGTGATGTCTTTAGCATTAGCACTTGAACTGTGTG TACTTAGCTTTTATACCAGTAGAGCTAGTATGTCTCTCTTTTTCTTTTATATCTACTCCA ATATGAAATTAATTCTTACTATAGATCTTTTCACCCTCAGAATTATTATTTTTCTCTCTT GAGTTGGGAGCATCTACTTTTTAATCTGAAGAGAGCACTTTCTGGCTTCTTGTTGATTTG AGTCACAGAGAGTCACTGCTCTGGGGCCTTTGGGATATTAACACGTTCTTAACATACACA TGATTCTTTTGATGCCATTACAGTCAGTCCTTGATATGACAGTGACTAATAAGTGGGTAA TGTATACCACAAGAATATGTCTGACAAAGGGACAAATGGGTAATTCATACCATGGACATT ATAAAGCAGGATGGCACAAGTTAATTATGTTCTTCATAACAGTGCGCAGATACCAACTGT TTTGATGATTTTTTTAATTTAAGATTTTTGGATTGACATTGAGTATCTTACATTGGTAAT TGGAACTTGCTCAGTCCTATGGCTGGCTCAGTCCTATGGTCTGCTGGCTTGATTATGGTA TTTGCACCCTCCTCCACCCCTTTGTGGGTACTGTTCAGTAGTTTCAGAGTATGGCTTTTT GACATGGGGAAGGCACCTTTCTTTCCTGAATTGTAGTAACCAGTCTTTCATGGATGGCTC TTGTCAGTTTCCAGGGAGTGGGACAGGTACTTAATTCAAGGACCAGCTTGCTTTCCTTTT CTTTGTCTCTGAAGCTGGTCACCAGTGTCTAGGATTATTG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Uxs1 (ENSMUSG00000057363)
Transcript ID	ENSMUST00000136704

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 41 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information