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Target CDS Information

Gene Symbol (Gene ID) Cerkl (ENSMUSG00000075256)
Cross Reference
CCDS CCDS38157.1
EMBL AL844590, AL928696, HQ426680
GO GO:0005730, GO:0005737, GO:0005737, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Cerkl-001
OTTP OTTMUSP00000014303
OTTT OTTMUST00000032178
protein_id AEK85685.1
RefSeq_mRNA NM_001048176.1
RefSeq_peptide NP_001041641
UCSC uc008kgs.1
UniParc UPI0000D7782E
Uniprot/SPTREMBL A2AQH1
Vega_transcript Cerkl-001, OTTMUST00000032178
Vega_translation 183852, OTTMUSP00000014303
Definition protein_id:ENSMUSP00000114325
translation:
MFRGRRRSRVGALEEAPPENPKAAAEPERVLLRGIFEIRRESCDVALGERALRWRRIQPE
LPAGGTRHDLLSKEESLELEDIFSVKLKRRCWAKHPGRDTLLGITLFICLKEQRNKLKDS
TLDLINFSEDHCDIWFRQFKKILDGFTSRPKALKILLNPQSHRKESVHVYYEKVEPLLKL
AGIETDVTITEYEGHALSLLDECELRGFDGVVCVGGDGSASEAARALLLRAQKNAGVEMD
CIPTLVGAELPLGFIPAGSTNALAHSLFGTPHVVTATMHIILGHIRSVDVCTFSSAGKLL
CFGFSAMFGFGGRTLALAEKYRWMSPSQRRDFAIIKALAKLKPEDCKISFLLAGCSQNKQ
ERKSQRSAESDCGGHWQTIQGQFLNISIMAMPCPCSMAPRGFTPDTRLHNGSMALRVVRN
TTRSEFVKHLKRHSSVKNQFNFPFVETYIIEEVKIHPKSNSNGYSPQEEGGNHTTASEHG
FPWNVDGDLMEAASEVHIRLHPRLIRLYGGSLEEMNDCKVACDCI

Chromosome 2
Length
Position(start - end)
96315
79332575 - 79428891
Orient to Chromosome minus
Link Location : (2:79332575-79428891)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cerkl (ENSMUSG00000075256)
Transcript ID ENSMUST00000143974
Reports
substitution
cSNPs11
Insertion63
Deletion80
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num7
non-synonymous num4
synonymous substitutions 79354941 (p.Pro251Pro), 79354989 (p.Ala235Ala), 79361350 (p.Asp201Asp), 79361359 (p.Ser198Ser), 79392949 (p.Leu143Leu), 79428753 (p.Leu47Leu), 79428838 (p.Pro18Pro),
non-synonymous substitutions 79333629 (p.Ile449Thr), 79342427 (p.Cys301Arg), 79361336 (p.Arg206Gln), 79392944 (p.Asp144Glu),
B6 transcript
(ENSMUST00000143974)
MFRGRRRSRVGALEEAPPENPKAAAEPERVLLRGIFEIRRESCDVALGERALRWRRIQPE
LPAGGTRHDLLSKEESLELEDIFSVKLKRRCWAKHPGRDTLLGITLFICLKEQRNKLKDS
TLDLINFSEDHCDIWFRQFKKILDGFTSRPKALKILLNPQSHRKESVHVYYEKVEPLLKL
AGIETDVTITEYEGHALSLLDECELRGFDGVVCVGGDGSASEAARALLLRAQKNAGVEMD
CIPTLVGAELPLGFIPAGSTNALAHSLFGTPHVVTATMHIILGHIRSVDVCTFSSAGKLL
CFGFSAMFGFGGRTLALAEKYRWMSPSQRRDFAIIKALAKLKPEDCKISFLLAGCSQNKQ
ERKSQRSAESDCGGHWQTIQGQFLNISIMAMPCPCSMAPRGFTPDTRLHNGSMALRVVRN
TTRSEFVKHLKRHSSVKNQFNFPFVETYIIEEVKIHPKSNSNGYSPQEEGGNHTTASEHG
FPWNVDGDLMEAASEVHIRLHPRLIRLYGGSLEEMNDCKVACDCI*
MSMv4 transcript
MFRGRRRSRVGALEEAPPENPKAAAEPERVLLRGIFEIRRESCDVALGERALRWRRIQPE
LPAGGTRHDLLSKEESLELEDIFSVKLKRRCWAKHPGRDTLLGITLFICLKEQRNKLKDS
TLDLINFSEDHCDIWFRQFKKILEGFTSRPKALKILLNPQSHRKESVHVYYEKVEPLLKL
AGIETDVTITEYEGHALSLLDECELQGFDGVVCVGGDGSASEAARALLLRAQKNAGVEMD
CIPTLVGAELPLGFIPAGSTNALAHSLFGTPHVVTATMHIILGHIRSVDVCTFSSAGKLL
RFGFSAMFGFGGRTLALAEKYRWMSPSQRRDFAIIKALAKLKPEDCKISFLLAGCSQNKQ
ERKSQRSAESDCGGHWQTIQGQFLNISIMAMPCPCSMAPRGFTPDTRLHNGSMALRVVRN
TTRSEFVKHLKRHSSVKNQFNFPFVETYTIEEVKIHPKSNSNGYSPQEEGGNHTTASEHG
FPWNVDGDLMEAASEVHIRLHPRLIRLYGGSLEEMNDCKVACDCI*
homology99.24 (526 / 526)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cerkl (ENSMUSG00000075256)
Transcript ID ENSMUST00000143974
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCAAATTGATCGTTTTGAAATGTGGCCAGGACAACTGGATTAAACAGCAA
CCGCCCTCCCCGGGCCACTCTATTGTGCAATCACAGCGGGAGAACTGCCCCTCCTACCAG
GAGGAAGTTAACGGTGAGCTCTGGAGGCCTCCTTTTGCATGATGGTCAAGTTTGGGTGAG
TAAGCTCTGCTCTTTGCAGTTTGCAGCTGTCGCATCCAGGTAGAGCTAAGGGATCCATAC
ACTACACTATGGAGGTGATTGAAGGTAATATCAACTTTGTGAGGTGTACATTTGTCTATG
CAAATCAGGGGTTTACTCTTACTCCTGGGCAGTCAAACAGATGTAGTCACACAGGTAATG
TAGCTCCTTGGGGGAATCTCAGAGGACACCCCTGAGAAGATAGACAGAGCCTTGCGCACT
GAAACTCCTTTGTGTCTCTTGGCCAGCAACTTCTGCAGTCACCCAGTAAGCAGATTCTTA
CTGTTCAATTTTATTTTTTTTTATTTATTTATTTGTTTATTTATTTATTTATTTTTTATT
ATTTTTGGACAGTGTCTTACACGTGCTCCCGACGGCTGTAGAACGCACTATTTAGTGCTG
GCTGGTCTGGAACTCAACTTCACCTGCCTCTGCCTCCTGAGTGCTGGAACTGAAGGCTTG
TGCCACAACTCAGAATTTTGGATTCTCTTTAGATTTATCTGACAAGAACCTGCACTTCAT
TTAACAAGAGACTAGGTGATGCCTAAGCAATCCAATTTGGGGGATGCCTGGCAAACTCCC
GGAGCTCAGCCAGGAAAATTCATACTAGCAGCATGGTCCAGAGAGGACAGTGGCCCTCTC
TGGGGGCAAAAGAGAAAGCTCCCGGGGCTCCTCCCTTCCGCCCCGCCTTCCTTCAGGCGC
TCTTGGTTGCCTTGGTAGCGTGGGACAAGGCCCAGGCAGTGGCTGTAGCCACACTTCCTT
CCCACGAAGATTTCTGGTGGCTCCCCAATTCGGCCCAGCACCGCGTCACC
1 EXON 1 79428702 79428891 - 1 190
ATGTTCCGGGGGAGACGCAGGAGCCGGGTGGGCGCCCTGGAGGAGGCGCCTCCAGAGAAC
CCAAAGGCAGCTGCTGAACCCGAGCGGGTTTTGCTGCGTGGCATCTTCGAGATCCGGAGG
GAAAGCTGCGATGTGGCGCTGGGCGAGCGGGCCCTGCGGTGGCGACGCATCCAGCCCGAG
CTCCCGGCTG
INTRON 1 - 2 79393186 79428701 35516
GTGAGTGGCGGCCCCCTACCTTCCC..........GACCGGGAGTTTAATTTCTTCTTAG
2 EXON 2 79392943 79393185 1 1 243
GTGGCACCAGGCATGATCTGCTGAGCAAAGAAGAGTCCCTAGAACTTGAAGACATCTTCT
CAGTGAAGCTGAAGCGGCGTTGCTGGGCCAAGCATCCAGGCAGAGACACACTGCTGGGCA
TAACGCTTTTCATCTGCTTGAAGGAGCAACGGAACAAACTAAAGGACTCCACGCTGGATC
TTATTAACTTCAGTGAAGACCACTGTGACATATGGTTTAGACAGTTCAAGAAAATCCTGG
AAG
INTRON 2 - 3 79368812 79392942 24131
GTAAGTCCTCATCACGGGGATTTTT..........CTAACCTTACTCATTTTCATTTTAG
3 EXON 3 79368680 79368811 1 1 132
GTTTCACAAGCAGGCCCAAGGCTCTCAAGATCCTCCTCAACCCCCAGAGTCACAGAAAGG
AGTCTGTCCACGTCTATTACGAGAAGGTGGAGCCTCTGCTGAAGCTTGCGGGCATAGAGA
CTGATGTGACAA
INTRON 3 - 4 79361388 79368679 7292
GTGCGTCTGTTGGTTTGTTTGTCTG..........TTTTTGTGTGTATTTTTTTTAATAG
4 EXON 4 79361324 79361387 1 2 64
TAACAGAATATGAAGGGCATGCCCTGTCCCTGCTTGATGAATGTGAACTCCAAGGATTTG
ATGG
INTRON 4 - 5 79355065 79361323 6259
GTAGGTTATATTATTAGTTTTCATG..........GCTCTGCCCGCTTCCTTGTTTGTAG
5 EXON 5 79354922 79355064 2 1 143
TGTTGTCTGTGTTGGTGGAGATGGATCTGCGAGTGAGGCCGCCCGCGCTTTGCTCCTCAG
AGCTCAGAAGAACGCTGGAGTGGAGATGGACTGCATCCCGACTCTCGTTGGAGCAGAGCT
TCCACTTGGCTTCATTCCAGCAG
INTRON 5 - 6 79343292 79354921 11630
GCAAGGCGTAGTCACAGATTCCTTC..........ACGTGTTTTAAATTTGTTTTGGCAG
6 EXON 6 79343217 79343291 1 1 75
GATCTACTAACGCACTGGCACATTCTCTCTTTGGAACTCCTCACGTGGTGACTGCAACCA
TGCATATTATACTAG
INTRON 6 - 7 79342481 79343216 736
GTAAGACTTCTCCTAGAGACATTCA..........TGATGGACTCGATACCCTGTTACAG
7 EXON 7 79342303 79342480 1 2 178
GTCACATACGGTCAGTGGATGTCTGCACCTTTAGCTCTGCTGGCAAGCTTCTTCGCTTTG
GGTTCTCAGCCATGTTTGGCTTTGGTGGAAGGACCTTGGCTCTGGCAGAGAAATACCGAT
GGATGTCCCCCAGTCAGCGAAGAGACTTTGCTATAATCAAAGCACTGGCCAAACTTAA
INTRON 7 - 8 79342222 79342302 81
GTAAGAGTTTTTACTATGGCAACAA..........ACAAATTTTATTGTATTTATTTTAG
8 EXON 8 79342162 79342221 2 2 60
GCCAGAGGACTGCAAAATATCATTTTTACTAGCAGGTTGTTCTCAGAATAAACAAGAAAG
INTRON 8 - 9 79341513 79342161 649
GTAAATAAAAGCTGTGCATTGTTGA..........TTTGTTTCTGTCGTTTTACTTCTAG
9 EXON 9 79341487 79341512 2 1 26
AAAATCACAGAGATCTGCAGAATCTG
INTRON 9 - 10 79341402 79341486 85
GTGAGTCACAAAGAATCTGCCTGAG..........AACCATGCACTTCCATTTTCTATAG
10 EXON 10 79341293 79341401 1 2 109
ACTGTGGTGGTCACTGGCAAACCATCCAGGGGCAGTTCTTGAACATCAGCATCATGGCAA
TGCCCTGTCCATGTTCAATGGCACCCAGAGGCTTTACACCTGACACCAG
INTRON 10 - 11 79338638 79341292 2655
GTGAGTATTTTTGATGACTATTAAA..........ATGTCAAATAAATGTTTAATTTCAG
11 EXON 11 79338541 79338637 2 0 97
ATTACATAATGGAAGCATGGCTCTTAGGGTTGTCCGGAACACCACTCGATCAGAATTTGT
AAAGCACCTGAAAAGACACTCCAGTGTAAAGAATCAG
INTRON 11 - 12 79333658 79338540 4883
GTATGGACATTTTTTTTTTTGGTTA..........TTTTTTTTTTTTTTGTTATATTTAG
12 EXON 12 79333479 79333657 0 2 179
TTCAATTTTCCCTTTGTGGAGACTTATACCATTGAAGAAGTAAAAATTCACCCAAAGAGT
AATAGCAATGGATACAGCCCACAGGAGGAGGGTGGAAACCATACAACTGCTTCAGAACAC
GGGTTTCCGTGGAATGTAGATGGTGACTTAATGGAAGCTGCATCAGAGGTTCACATTAG
INTRON 12 - 13 79332657 79333478 822
GTAAGCCCAACTATTTTATGACTTT..........ATCAAACCCTTGTTATTCCTTATAG
13 EXON 13 79332530 79332656 2 - 127
GCTGCACCCAAGACTGATCAGGCTCTATGGAGGAAGCCTGGAAGAAATGAATGATTGCAA
AGTAGCATGTGATTGCATATGAAAGAAGTATGTAAGCAGAAATTTATTATGAAGGAATCT
GGCATGC
3' upstream sequence
AAGATATATACAAATAGAAAATGCATTTTTGTTGTGGATAGCCCTGGGGCTAATTATATT
TGATGTTAATTCTGTTCTCCTGTGAGTGGTTGTGAACAAGGAATGAGTCAGCATTCAGGT
GATTGTCTGTAAACTTGATTCCACCTTAATTTGTAAAACAAAGGAGAGCTGATGATTGGG
CAGATAAAAGGGAAGGTGGGGCAGAGAAAAGAAGGAGAAAATGGAAGAGGGAGAGGATGC
AGAGGAGGAGGAAGATGAAGTGAAGCAGAGCAGAAGCACATGGCCTGGAGAAACCACAGG
TTCTAAGGGGTCTCATAAACTGTGGAAGATGGTAGTGTAGTGGTAGATCTGCCCAATCTA
GGTGCACAGCTTGTAAGCATATGAATTAAATCATGCTTTCATTGCCGGGGCTTATTTGGG
ATGGAGATTTAACACAACAAAATGGCGCCCAACATATTGATTTGAACTCAACTAACTAAG
ATAAAAATTCACTGCCCCCCAACACCTGAAAGGGGCTTGGGCAGTGACCTAGGCTGTAGC
AGTATGAATTTGATTTGAGGGGCCTACAGAGAACAGCAGAGAAGCATCTACACCAGAGAG
AGCCTTCCCTGTTTGCTTCCCTATGTCCTTTGTTCCCTACCCTGCCTCCCCCACTTCCAA
ACAGGGACACAGACAACAGGGGTCTTTTTACATTCAGCTTCTCCCCATGAATAAAAAATT
GGGAGGCAAAGGTACAAAGGTCTCCAGACCAAATAACTCATTGATATAAAGAGAAAAATA
TAACCTTTTGATACTTAAAGATAGTATAACGATATATTGCTCTAGTAAGTCTTACAGGAT
ACTCATATTCTGTCTAACATGGGCTCCACTGGAGTTTTTAGTTTAAATCCTGGTTTGTCA
AGCTGCCTCTTATAAGCAGGTATAGTACTTAAAGATGGGAAATTTTACCTGTGATTTGGA
ACTATATAGGGATTATTAGTTACTGACTCCAAGTAGAGAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Cerkl (ENSMUSG00000075256)
Transcript ID ENSMUST00000143974
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 526 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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