top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Arhgap26 (ENSMUSG00000036452)
Cross Reference
EMBL AC110730, AC129603, AC132098, ...show all
GO GO:0005096, GO:0005543, GO:0030036, ...show all
goslim_goa GO:0003674, GO:0007010, GO:0008150, ...show all
MGI_trans_name Arhgap26-009
OTTP OTTMUSP00000044593
OTTT OTTMUST00000083097
UniParc UPI0001889BB3
Uniprot/SPTREMBL D3Z1X5
Vega_transcript Arhgap26-009, OTTMUST00000083097
Vega_translation 221545, OTTMUSP00000044593
Definition protein_id:ENSMUSP00000121894
translation:
MSQMFFTGNWLAGKTTSTPSSLRYVVRSSSKAACLGGERCLPTHWKLLFTFLWTKKVTYV
ALLYRKQDLSSAKRKFADSLNEFKFQCIGDAETDDEMCIARSLQEFAAVLRNLEDERSRM
IENASEVLITPLEKFRKEQIGAAREAKKKYDKETEKYCGTLEKHLNLSSK

Chromosome 18
Length
Position(start - end)
433757
38676776 - 39110534
Orient to Chromosome plus
Link Location : (18:38676776-39110534)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Arhgap26 (ENSMUSG00000036452)
Transcript ID ENSMUST00000148850
Reports
substitution
cSNPs2
Insertion321
Deletion348
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num1
synonymous substitutions 38933822 (p.Ser20Ser),
non-synonymous substitutions 38933839 (p.Val26Ala),
B6 transcript
(ENSMUST00000148850)
MSQMFFTGNWLAGKTTSTPSSLRYVVRSSSKAACLGGERCLPTHWKLLFTFLWTKKVTYV
ALLYRKQDLSSAKRKFADSLNEFKFQCIGDAETDDEMCIARSLQEFAAVLRNLEDERSRM
IENASEVLITPLEKFRKEQIGAAREAKKKYDKETEKYCGTLEKHLNLSSK
MSMv4 transcript
MSQMFFTGNWLAGKTTSTPSSLRYVARSSSKAACLGGERCLPTHWKLLFTFLWTKKVTYV
ALLYRKQDLSSAKRKFADSLNEFKFQCIGDAETDDEMCIARSLQEFAAVLRNLEDERSRM
IENASEVLITPLEKFRKEQIGAAREAKKKYDKETEKYCGTLEKHLNLSSK
homology99.41 (170 / 170)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Arhgap26 (ENSMUSG00000036452)
Transcript ID ENSMUST00000148850
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAATAAATATTTAGGTTGTCCCCAGATCTCTTTCATTTTGATTTTTTGAG
GCAACTCTCATGCAGCTGACCTCAAACTCCTGATTCCCCTGCCTCTCCCTTACTCCTGAG
TGCAGAGATTATAGCTATAGGTGTGTGCTTCTCTACATTTTTAATATGATGAATAGGCTG
AAAATAAGATCTTAGAGATTCTTCCCCTCTCTCTTTCTTTCTTGTGTGACTGTATGTGGT
GTGTGTGTGCGCGCTCACATGTGTGCATGCTCCAGTTCATATATGGAGGTCAGAGTACAC
ATTTGTGGAGTTGGGTCTCCCCTTCCATCTTTATTTCCATGAGTTCCAAGGATCAAACTC
AGGTCAGATTTCCAAAGCAAGTGCTTTTTCCTATTGAGCCATCTTGCCAGGCCAAGATCC
CACTTTCAGTTGGCTTTATACCCAGGAGTGGGGTTGTTGGATGGAAGGGTAGTTCTAGCC
TTAAAGTTTTGGCACTCCCGCCATTTTCCATGATGGCTGCCACCATTCTCACCAGCAGTG
CAGTTTCCCACCTCTCTGGATGCTCACCAATAAGTTGCCAACTTGTTGTTTTTATTGCTT
TATAATAACTGTGTTAATAGGTTCTGGTAAGGCAGCAGCTGCTGCTTCCACTCCTTGCCT
TCCTCCCCTTCCCCTCCCTCTCTTTATCCTGACAGTCTTTATGTGTAGCCCAAGCTGGTC
TCAAACTTGGGACCCTCTTTCCTCCACCTCCCATGTGCTGGGGTCAAAGGTTTGTGCCAC
AACACCCACCTGGCATTTTTTTTTCTCATGTAGTTGTTGGCTATTGGTGTGTCTCCGTTA
ATGAAATGTCTGCTTTTAAATTGGGTTTTTACTCCCTTCTTGTTGGTCCTGTTGTATTGT
AGAAGTTCCTTACATGTTTTGGAAATTAACCCCTGACCAGATACAAGTGAGAAATATTTT
CTTTTCTATTCTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTGCTGCAG
1 EXON 1 38676718 38676805 - 0 88
AGACTGCCTTTAGCAATCCTTAACATTGTCCACGGCCATTACAACATCAAAAAGAGGCAT
GAGCCAAATGTTCTTCACAGGAAACTGG
INTRON 1 - 2 38676806 38933792 256987
GTAAGTAGATCTCAATCCATGCATA..........TTCACCAGTACCCATCCTTTTGCAG
2 EXON 2 38933793 38933964 0 1 172
TTGGCTGGGAAGACCACCTCTACACCATCTTCACTCAGGTATGTGGCCCGAAGCAGCTCC
AAGGCTGCTTGCCTTGGAGGGGAAAGATGCTTGCCAACACACTGGAAGTTACTTTTCACA
TTTCTGTGGACAAAGAAAGTCACCTACGTGGCACTACTGTACAGAAAGCAAG
INTRON 2 - 3 38933965 39097629 163665
GTAAGTGATTTCAGGGCTATTGTTT..........CTTTTTTTTTTTTTTTTCTTATTAG
3 EXON 3 39097630 39097725 1 1 96
ATTTGTCTTCGGCAAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGTA
TAGGAGATGCCGAAACAGATGATGAGATGTGTATAG
INTRON 3 - 4 39097726 39099571 1846
GTAAGTCACAACCTTACTGAAGATG..........CCTAATGGCCTCTTTCTTTTTCCAG
4 EXON 4 39099572 39099633 1 0 62
CGAGATCTTTGCAAGAATTTGCTGCTGTTCTCAGGAATCTTGAAGACGAGCGGAGTCGAA
TG
INTRON 4 - 5 39099634 39102168 2535
GTGAGTGTCCTGGGCTGACCGCTGG..........CTTGCCCTCTGCTTTTCCTTGTCAG
5 EXON 5 39102169 39102240 0 0 72
ATCGAGAATGCCAGCGAGGTGCTCATCACACCCTTGGAGAAGTTTCGAAAGGAGCAGATT
GGGGCCGCCAGG
INTRON 5 - 6 39102241 39110454 8214
GTGAGGATTTTGTAAACTTTGTTCA..........CTCCTCCCCTTCTCCCCATCCCCAG
6 EXON 6 39110455 39110534 0 - 80
GAAGCCAAAAAGAAGTATGACAAAGAGACCGAGAAGTACTGCGGCACCTTAGAAAAACAT
TTGAATTTGTCTTCCAAAAA
3' upstream sequence
GAAGGAATCCCAGCTACAGGAGGTAAGGGAGCACAGAGCTCCTGCGTGGTATCAGCTACG
CATGGTCCTGGGGTACATGCTAATTGTTATTTGTGAGCCAGTACCTGGATTGGAGATCTG
AGAAGCTAGCCCAAGCCTCCTCCGGGGCCACGCCCTCCTTGCCCCACCCTCTTCTGTGCT
CTCTAACCTGCCAGTGGCAGAGGAGCTCAGTGCTGCCCCCTGTCTCCCGAGTGGCTGTGC
CTGTTTCTGAGTGCCTCTCCCTTTCAGGCTGGGATCTGTCTTGCTCTTTTCTTGCCCTTG
GACTCAAGGCTGCACTGTCACCCATCTAGGGCAATCTTGATCTCCTGCCTCGTATCAGTG
ACTTACAAGACTGGCATCTGAAACACGCTGGTTACGTTTCCTTAATAATCACATTTTATT
GTTTCAATACAGTATTTGATACTTACCTTTTCCTCTTTTTTAGTTTTTACACTATTTTAG
CCTCATATCTGTATTTTAAGCATTGTTAATCTTTTTTTTTAAAGAAAATCTTCTTTGATT
GAGCATGGTGGCAGAAACCTGTAATACCAGTACTTGCTAGGCCAAGGGAGGAGGATTATG
AGTTCAAGGCCATCCTGGGCTATGTAGGAAGGGACCCTGTCTCAAAAAACAAAGGGTTAG
GAGTGTAAGCTTACAGAACATTAAGACCATAGGTAGCTCTCCATGCACCATAAAAAAGAA
GGAAAAAAAAAAAAAAACATTCTCTGGCTTGCTCCTGGGTTCCTTGGATTTGAATTTAAA
AGAACACCATTGAAAATTCTTTTAAAAAGTAGTTAATTTGGAAAGAAAACTCAGCTTGGC
ATCCACAGAGCTGCCTCCGTTTTCCCTGTTTGAGTCCATTAAGTCCATGGTGGGGGTGGG
GGGTGGGGTGGGGGTAGTTAACGGGCAGCAGTGTGGAATGATGCTGCCATCTAGTGGACA
ATGATGATATGTTAAAAAGCAGTGTGTTCTTCAATGACTA..........

Sequence Detail Report

Gene Symbol (Gene ID) Arhgap26 (ENSMUSG00000036452)
Transcript ID ENSMUST00000148850
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 170 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information