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Target CDS Information

Gene Symbol (Gene ID) Fkbp14 (ENSMUSG00000038074)
Cross Reference
EMBL AC084800
GO GO:0000413, GO:0003755, GO:0005528, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Fkbp14-004
OTTP OTTMUSP00000033471
OTTT OTTMUST00000066700
UniParc UPI00001F3C6C
Uniprot/SPTREMBL D6RDT0
Vega_transcript Fkbp14-004, OTTMUST00000066700
Vega_translation 197445, OTTMUSP00000033471
Definition protein_id:ENSMUSP00000114521
translation:
MRFFLWNAILALWVTVLSGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDG
SLFHSTHKHNNGQPVWFTLGILEVLKGWDQGLKGMCVGEKRKLTVPPALGYGKEGKVF

Chromosome 6
Length
Position(start - end)
5964
54587078 - 54593043
Orient to Chromosome minus
Link Location : (6:54587078-54593043)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fkbp14 (ENSMUSG00000038074)
Transcript ID ENSMUST00000155047
Reports
substitution
cSNPs3
Insertion18
Deletion18
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 54589292 (p.Gly110Gly), 54592990 (p.Ser18Ser), 54592995 (p.Leu17Leu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000155047)
MRFFLWNAILALWVTVLSGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDG
SLFHSTHKHNNGQPVWFTLGILEVLKGWDQGLKGMCVGEKRKLTVPPALGYGKEGKVF*
MSMv4 transcript
MRFFLWNAILALWVTVLSGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDG
SLFHSTHKHNNGQPVWFTLGILEVLKGWDQGLKGMCVGEKRKLTVPPALGYGKEGKVF*
homology100.00 (119 / 119)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fkbp14 (ENSMUSG00000038074)
Transcript ID ENSMUST00000155047
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AACTAGCTTCTCTCCGGGCTAGTTTTTTGCAACTTGATGCGGGCTAGAGT
AATTTGGAACGAGGATCTCCGAACCATAAGATTTACCTGTAGGCAAGTCTCTACTGCTTT
TTCTTAAATACTGATTGATGTGGAAGGGTCCAGTTCACTGAGAGTGGTGCCACCCCTGGT
CAGGTGATCCTAGGTGCTATTAAAAAAAAAAAAAAAAAGCAGGCTGAGCAAGCCAGTAAG
CAGTACTCCTCTATGGACTCTCTACATCAGCTCTTGCTTCCTGATTGCTGTTTTGAGTTC
CTACCCTGCCTTCCCTGGATAATGGACTATGATATAGAAGTGTAATAGGTAAAAATCCTT
TCCTCCCCAAGTTGCTATTAGTCATGATGCTTTAACCCAAGAATGGAAACCCTAAGACAC
TGTCTAAATGGGGGGGGGGGGGGGAGTGGGTGGGGGGGAATAGCCACGTTAAGTTAGTGA
GGATCTTGCACCAGAGTGTGCTTTGCGAACCTTAAAGCATCCTAGTAGGTCCTTAGAGTT
TCTGTTCTAAATTAGTAACCATAGTTCTGAGCCTTTATTTGTGGCATCTTGAAGAAGGCT
GCTTCTCAGTGTCTGGTCTTTCCAAAAACCCGAGTGTCACCTGGCTCCAGACTCCGCAGC
TGGAATACTTCACTGAAACAACCCTTCCCCCATCTCCCACCCCCGAGGATGTTAGCCTGG
ATCCAGCTGCCTTCCCGAGGTGGGAGAATTTCCTAACCAGCGGGCTCTAGGACTGTTCCG
AAGGGTCACATCCGAGCCCAGGGCCCAACAGCACACAGAACCACTACATTTTTTTCGGTG
CCATTGGCTGGGAGGCGCCTGAAGGACAGCAGCGCCAGCCAGTGGAAGGACGCCTTTCCC
TAGAAGCTGCCTTATTAGAACCAATCATGTTTGGATGGGGCTTTAACTCTTTATTGTGAG
TTCGCTGTCTGTGTGAAAATTGTTAGAAAAAGTGCCACGTCTTCCTGGGA
1 EXON 1 54592847 54593148 - 2 302
GTGTGTCTGTTGGGGGAGTCCTGAACTTGCTTGGCCTAAGCTGTCTCCGCTTTTGACACA
TTTTTAACTCTATGAAGTCGGGGGCCTTTCCTCTGCTTTGGTAACATGAGGTTTTTCTTG
TGGAACGCTATCTTGGCACTGTGGGTCACGGTTTTGAGTGGAGCTCTGATTCCTGAGCCA
GAAGTGAAAATCGAAGTTCTCCAGAAGCCATTCATCTGCCATCGCAAGACCAAGGGAGGG
GATCTGATGTTGGTCCACTACGAAGGCTATTTAGAAAAGGACGGCTCCCTGTTTCATTCC
AC
INTRON 1 - 2 54589425 54592846 3422
GTAAGTAATTACGCCTTGCAGGCAG..........TTCTGCTGTGTTTCCTTTCTGGCAG
2 EXON 2 54589273 54589424 2 1 152
TCACAAACATAACAATGGTCAGCCTGTCTGGTTCACCCTGGGCATACTGGAGGTTCTCAA
AGGCTGGGACCAAGGCTTGAAGGGAATGTGTGTGGGAGAGAAGCGAAAGCTCACCGTTCC
TCCTGCCCTGGGTTATGGCAAAGAAGGAAAAG
INTRON 2 - 3 54587086 54589272 2187
GTAACCCTGTGTGACCCTCCCTGCT..........ACTAATTCTTCCACTAATTTTGTAG
3 EXON 3 54586996 54587085 1 - 90
TATTTTAGTACATGCTTGCATGCCTCCTTGGAAAGATACCAGCTTTCCCACCGATCTATG
CATGCCCCTTCCCTGTCTCCATCGGCAACG
INTRON 3 - 4 54585931 54586995 1065
GTAAGCTTTGGCTCATCCTGTGAGT..........AAATTTCCCCACCTCCTCATATCAG
4 EXON 4 54585803 54585930 - - 128
GTAAAATCCCTCCAGAGAGCACACTGATATTCAACATTGACCTCCTGGAAATTCGAAATG
GCCCAAGGTCCCACGAGTCGTTTCAAGAAATGGACCTCAATGACGACTGGAGACTCTCTA
AGCATGAG
INTRON 4 - 5 54579687 54585802 6116
GTGACTCTACCTTCTGCCTCTCCTC..........ATTAATTACAGCTGCTTTTTTGCAG
5 EXON 5 54577605 54579686 - - 2082
GTTAAAGTGTATTTACAGAAGGAGTTTGAGAAGCACGGTGCCGTGGTGAATGAAAGCCAT
CATGATGCTTTGGTGGAAGATATTTTTGATAAAGAAGATGAAGACAAAGATGGATTTATA
TCTGCCAGAGAATTTACATATGTGCATGACGAACTGTAGGGACGCACCTGCCATTTTATA
CACGTTCATTTCTAATGGAAAGGCAGCACCTTTGAACAAAGCTTTTCTCTTTGCCTTTCT
TGTTTTTAGTTTTATATTCTTTTTCTATTATTTAAAGAACCTCAGTGACTTTGTAAATAT
CGTTCGTATCTTTCCAGTGAGTTATTGGGCAGGAACGGTTGTCTTTGAGTAGAGGACTCC
CAGGCCGCTTCTGAGCTCACACGGGAGCTGGCTTTGCTTCCTTGCTTCTTTCTAATGGTA
ACATGGCAACTGGAAACACACCCCAGCATATACACAGGTGGTAGCACGGACCAGGGCCCT
GTACTTCTCCCTCCCTCTGTCTTCTCAAAGTCCAGTTACTGGCATATTTGAAAGCTTTTG
TACTAGTTCAAGGCTTGCTATTTTCATGTTATAGTGAAGTGGTTTTTTCTTTACCTGCTT
TTGAGTCCCTGCTTGCGGGCAGGAGGAATATGGTGGACCTTGTTCCTTAACAGCTCTGGC
CTTACTGTGGAGATACACAATGTGGATGAATGAGGGAGGTAGCAACTCATGAATAGGAGG
TCAGAGATGTCCTAGTGGCTAATAAACCATTACAATAAGTCAGAAAAATAATATATTTGT
TTCCTTGTAATCAACACACCAAAATATGGTAGGCATGGAAGAGAGTTGTATTTATAATTA
ATGTTTACTTTTGAGGCTACCAAGTTAGCCTTCTGGTTCTTAAATAAATAAAGTTTGCAG
CTAGTATATTACTTTGCAACAGCACTGAATCCTGGGAGAAATTAGTATGTCAATGAGACT
TCCCCATTTCTGATTCATGAAAAATAAGGCTAACCAATAACAGCTACTATTAATACTGGG
CACTGACATTTATCATTTTATCTCAAATTGGCTTCCAAAAATGACTACTACTTCTGTTTT
TTAGATTGTTTTTAATCAAATTGGCTTTTATCTTAAAACAAACTTCCCAGACCTCCATTT
GTTATGCTCCTCATAGTTTACACGTGCACGATTGCCTGACCTGGGGTGTCTGACACCCCT
GGGAAGCTGCTGGGTCTTGGGGTACTTCTTTATAGGTAAGAAGCTCTGTTCAGAGATTGG
CTGGTGAGCCCAGCCTTGGTGCCTAAGTTGTAGATGCACCTTCAGTCCCTGAGTTCAGTC
TTCCACTTCTCTGCTAATGAAGATGCAGCAAGTTTGCGTCTCTCTCTCTTGGTCCTCATT
TCCCTTAGCATCTTCACCTCTGGGGATAATTCCTGCCAGTTCCTAGCTGATCACAGCTTT
CCTTAGGATCCAGGAAGGTCTGTGTTTTCTGAGAATAGTCTTGCTTTGTGTGTCACCCTC
CCAGTAACCCCCTGAGAGGGGTTAGGTGTATGTCTTATGGCATCTAAGTTCGCCTGTTCC
TGTCACTTCCTGTTGTTTGTAGATATTGTATTGCAACACTAATTCTGCATTGACATTGTT
ACTGGCGAGAATTACTCAAGGGCTTGTTCTTGAAGATGTCAGGGGTAACTGTAACTGTTG
CCACCTGCATTTTTCTGGGGAGGTTGTGAGAAGGCCAGTGAGTGTCGTGGACCAGTGGTA
TGTCTTGAAGGCTGCTTTGTTCCAAGCTGCCACCACCATCTGCGCTGGAGCAGTGAAGAA
GAAAGAATCTTGACCACTCAATTACATGGATTTTTATCAGATCTCAGCTAAACTTTCAAA
CAGAAGTATGAAAGAAAGACATACCTGGAGATAATGGTTGTTAAAGCCATCTGCCATTGT
GTATAGCAATGCCTTTGCACCCTCCCATTAGTGGGAATAGTCAAACACCAAATGTGACTT
CACATGTATATACTTTGACTCCTAGCTGCTCTCTGTGTAATATTTAAATTTCTATGTCTA
TTGTGACACTCTTTTTGAAAATAAAGTTTATTTGGGAAATAA
3' upstream sequence
CTAGTTTTGTACATGTACATACATGTGTGTGGTGTTTGTGTATATATATTCACATATGTG
GGGGCCCAGAGTGTGTGCAGGTACATGTGCCTTCCTAGGTTTTCTCACCTCATGCATGGA
GGTGGGGCCTCTCGGAACCTCCTGCTCTTCTCTTTGGTCTTCGCTCTTCGTTTTGGCTAG
CCTGCTTGCTACAGAGGTTCCATCTCTGCCTCCCATGTAGTGGGGTTATAGGTAAACCAC
TTTGCACAGTGGCTTTTTTTGTTTTTAATGTGGGTTCTGGGGGGCTGAACTTTAGTCCCC
AGATGTTCAAGGCAGGTGTTTTACCCTCACTCATCCCCTCTACCCTGATTTTTTGAAAAA
GGAACACTATTAAAGCAGCTTTGCCCCTCCTCCCTCCCTTTTTGTCCCCGCTGAGGACTG
GGCCTTCTGCATGCTAAGCCACTGACATACACCCCTAGTTCCTCTCCAGTTTTATTCTAG
TATTCATGGCAAAAAGATGGGCAGTCTCTGGAGATGGGTGGAGTGACATGGTCTGTCTCT
GAGCTGCTGCTCTGTGGTGGTCTGTCATGAAAGCAGTTGTTTCCAATTTGCATTAAACCT
TGAGCATTAAGGGCAGAAATTGATTGTGAATTTCGCACAGGCCTTATGGGGGAGGCGGAG
CAGGAGAGGGCAGGAGAGGGCAGGAGAGGAGGTGTTACCATTGTTGTTTAGGTTTGACAC
GTTATTGTGTGTGTAGCAGGTGGACATGATCTCTGCCTATTGGGGAATCAGTGTTATCAA
ATGCTTTATGTGATTACATGGAATGCTGGCTTTGCACAAATAACAAGAAACAATCATTTC
TGCTTCAGATGAAGCAATTAGCTGTTTGGGATTTTGCTTTGTGCGAATGAATTGTACTTA
TTCATGAAGTAAAATTACATCCACGAGTTTAGAGTTCCTCATGGTCCCTCTCGCTACAGA
ACTGAACAGTGTGTGTGTGGTGGGGGAGGGGGATTCTTGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Fkbp14 (ENSMUSG00000038074)
Transcript ID ENSMUST00000155047
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 119 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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