MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Rb1cc1 (ENSMUSG00000025907)

Cross Reference

GO	GO:0001889, GO:0001934, GO:0005634, ...show all
goslim_goa	GO:0005575, GO:0005622, GO:0005623, ...show all
MGI_trans_name	Rb1cc1-003
OTTP	OTTMUSP00000045349
OTTT	OTTMUST00000084200
UCSC	uc011whx.1
UniParc	UPI0001889EB7
Uniprot/SPTREMBL	F7CC56
Vega_transcript	OTTMUST00000084200, Rb1cc1-003
Vega_translation	178638, OTTMUSP00000045349

Definition

codon_start:2
protein_id:ENSMUSP00000125348
translation:

XAPAIPKATFSTENDMEIKVEESLMMPAVFHTVASRTQLAVEMYDVAKKLCSFCEGLVHD
EHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSDYLQSIEDIKLKLTHLGTAVSVMAKI
PLLECLTRHSYRECLGRPDSLNEHEGSEKAEMKRSTELVLSPDMPRTTNTSLVTSFHKSM
EHVAPDPTDWINVQDRPNDVESLVRKCFDSMSRLDPKIIQPFMLECHQTIAKLDNQNMKA
IKGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLE
RVRIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKQLYEAEKSKRESFGKL
FRKSFLRNRLFKGLDSWPSSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPL
LCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLNEQKVSTSQASPQSAASPRIESTTG
ITTTTSPKTPPPLTVQDTLCPAVCPLEELSPDSIDAHTFDFETISHPNTEQPVHQASIDL
DSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTS
TRGNEGFGDRAALHVQLEKCRAAAQDSHSSIQTIKDDLCHFRTFVQKEQCDLANYLKCTA
VEIRNIIEKVKCSLEITLKEKHQQELQSLKIEYECKLDALVKDSEENVNKILKLKENLVS
LEEALQNKDNEFTSIKHEKDAIVCVQQEKDQKLLEMEKIMHTQHCEIKELKQSREMALED
LKKLHDEKIESLRAEFQCLEQNHLKELEDTLHIRHTQEFEKVMTDHNMSLEKLKKENQQR
IDQMLESHASTIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRTQ
QKEMLKSLLEQETENLRTEISKLNQKIHDNNESYQVGLSELRALMTIEKDQCISELISRH
EEESNILKAELDNVTSLHRQAYEIEKKLKEQIVELQTRLNSELSALEKQKDEKITQQEEK
YEALIQNLEKDKERLVKNHEQDKEHLIQELNFEKNKAVQTALDEFKVERELVEKELLEKV
KHLENQIAKTPAFESAREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSL
IAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKQ
LEEEVSKLRTSSFLSSAPVAAAPELYGACAPELPGEPERSVMETADEGRLDSAMETSMMS
VQENMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSLSSVSSRHSEKIAIRDFQVGDL
VLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVMEKEYCQ
AKKAQNRFKVPLGTKFYRVKAVSWNKKV

Chromosome

Length
Position(start - end)

39995
6234279 - 6274275

Orient to Chromosome

plus

Link

Location : (1:6234279-6274275)
/

Detail Map

name	Rb1cc1 (ENSMUSG00000025907)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Rb1cc1 note : RB1-inducible coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1341850]

name	Rb1cc1 (ENSMUSG00000025907)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000159906

name	Rb1cc1 (ENSMUSG00000025907)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000160871

name	Rb1cc1 (ENSMUSG00000025907)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000027040

name	Rb1cc1 (ENSMUSG00000025907)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000160062

name	Rb1cc1 (ENSMUSG00000025907)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162795

name	Rb1cc1 (ENSMUSG00000025907)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000161327

name	Rb1cc1 (ENSMUSG00000025907)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162257

name	Rb1cc1 (ENSMUSG00000025907)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000159530

name	Rb1cc1 (ENSMUSG00000025907) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084214 Vega_transcript:Rb1cc1-009 Uniprot/SPTREMBL:E0CZG6 EMBL:AC102781 EMBL:AC139064 GO:GO:0001889 GO:GO:0001934 GO:GO:0005634 GO:GO:0005737 GO:GO:0007254 GO:GO:0007507 GO:GO:0031965 GO:GO:0043066 GO:GO:0045793 GO:GO:1990316 GO:GO:2001237 MGI_trans_name:Rb1cc1-009 Vega_translation:178633 Vega_translation:OTTMUSP00000045356 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000045356 OTTT:OTTMUST00000084214 UniParc:UPI0001889EB9
definition	note : transcript_id=ENSMUST00000159906 protein_id : ENSMUSP00000125396 translation : MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVCTYSAGTDTNPIFLFNKEMILCDRAPAIPKATFS

name	Rb1cc1 (ENSMUSG00000025907) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084960 Vega_transcript:Rb1cc1-014 Uniprot/SPTREMBL:E0CYY6 EMBL:AC102781 EMBL:AC139064 GO:GO:0001889 GO:GO:0001934 GO:GO:0005634 GO:GO:0005737 GO:GO:0007254 GO:GO:0007507 GO:GO:0031965 GO:GO:0043066 GO:GO:0045793 GO:GO:1990316 GO:GO:2001237 MGI_trans_name:Rb1cc1-014 Vega_translation:178634 Vega_translation:OTTMUSP00000045846 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000045846 OTTT:OTTMUST00000084960 UniParc:UPI000198D196
definition	note : transcript_id=ENSMUST00000160871 protein_id : ENSMUSP00000123768 translation : MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVCTYSAGTDTNPIFLFNKEMILCDRAPAIPKATFSTENDMEIKVEESLMMPAVFHTVASRTQLAVEMYDVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSY

name	Rb1cc1 (ENSMUSG00000025907) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS35507.1 Uniprot/SWISSPROT:Q9ESK9 RefSeq_peptide:NP_033956 RefSeq_mRNA:NM_009826.4 RefSeq_mRNA_predicted:XM_006495443.2 RefSeq_peptide_predicted:XP_006495506.1 RefSeq_peptide_predicted:XP_011236640.1 RefSeq_peptide_predicted:XP_011236641.1 RefSeq_peptide_predicted:XP_011236642.1 RefSeq_peptide_predicted:XP_011236643.1 RefSeq_peptide_predicted:XP_011236644.1 Vega_transcript:OTTMUST00000084091 Vega_transcript:Rb1cc1-001 UCSC:uc007afr.2 Fantom:A530065P16 Fantom:K530048M04 EMBL:AB050017 EMBL:AB070619 EMBL:AC102781 EMBL:AC139064 EMBL:AJ242720 EMBL:AK041038 EMBL:AK159066 EMBL:X82318 GO:GO:0000045 GO:GO:0000407 GO:GO:0001889 GO:GO:0001934 GO:GO:0005515 GO:GO:0005515 GO:GO:0005634 GO:GO:0005737 GO:GO:0005737 GO:GO:0005829 GO:GO:0006351 GO:GO:0006355 GO:GO:0007049 GO:GO:0007254 GO:GO:0007507 GO:GO:0010506 GO:GO:0019901 GO:GO:0031965 GO:GO:0031965 GO:GO:0034045 GO:GO:0043066 GO:GO:0045793 GO:GO:1990316 GO:GO:1990316 GO:GO:2001237 MGI_trans_name:Rb1cc1-001 Vega_translation:178635 Vega_translation:OTTMUSP00000045266 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005737 goslim_goa:GO:0005829 goslim_goa:GO:0006464 goslim_goa:GO:0006914 goslim_goa:GO:0006950 goslim_goa:GO:0007049 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0009058 goslim_goa:GO:0019899 goslim_goa:GO:0022607 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 protein_id:BAB16846.2 protein_id:BAB85610.1 protein_id:BAC30793.1 protein_id:BAE34792.1 protein_id:CAA57761.1 protein_id:CAB92238.1 OTTP:OTTMUSP00000045266 OTTT:OTTMUST00000084091 Reactome:R-MMU-1632852 Reactome:R-MMU-2262752 UniParc:UPI0000355FED
definition	note : transcript_id=ENSMUST00000027040 protein_id : ENSMUSP00000027040 translation : MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVCTYSAGTDTNPIFLFNKEMILCDRAPAIPKATFSTENDMEIKVEESLMMPAVFHTVASRTQLAVEMYDVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSDYLQSIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRPDSLNEHEGSEKAEMKRSTELVLSPDMPRTTNTSLVTSFHKSMEHVAPDPTGTERGKELRESCQSTVQQEEASVDAKDSDLPFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPKIIQPFMLECHQTIAKLDNQNMKAIKGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLMIMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLERVRIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKQLYEAEKSKRESFGKLFRKSFLRNRLFKGLDSWPSSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPLLCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLNEQKVSTSQASPQSAASPRIESTTGITTTTSPKTPPPLTVQDTLCPAVCPLEELSPDSIDAHTFDFETISHPNTEQPVHQASIDLDSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTSTRGNEGFGDRAALHVQLEKCRAAAQDSHSSIQTIKDDLCHFRTFVQKEQCDLANYLKCTAVEIRNIIEKVKCSLEITLKEKHQQELQSLKIEYECKLDALVKDSEENVNKILKLKENLVSLEEALQNKDNEFTSIKHEKDAIVCVQQEKDQKLLEMEKIMHTQHCEIKELKQSREMALEDLKKLHDEKIESLRAEFQCLEQNHLKELEDTLHIRHTQEFEKVMTDHNMSLEKLKKENQQRIDQMLESHASTIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRTQQKEMLKSLLEQETENLRTEISKLNQKIHDNNESYQVGLSELRALMTIEKDQCISELISRHEEESNILKAELDNVTSLHRQAYEIEKKLKEQIVELQTRLNSELSALEKQKDEKITQQEEKYEALIQNLEKDKERLVKNHEQDKEHLIQELNFEKNKAVQTALDEFKVERELVEKELLEKVKHLENQIAKTPAFESAREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKQLEEEVSKLRTSSFLSSAPVAAAPELYGACAPELPGEPERSVMETADEGRLDSAMETSMMSVQENMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSLSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVSWNKKV

name	Rb1cc1 (ENSMUSG00000025907) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084213 Vega_transcript:Rb1cc1-008 Uniprot/SPTREMBL:E0CYU7 EMBL:AC102781 EMBL:AC139064 GO:GO:0001889 GO:GO:0001934 GO:GO:0005634 GO:GO:0005737 GO:GO:0007254 GO:GO:0007507 GO:GO:0031965 GO:GO:0043066 GO:GO:0045793 GO:GO:1990316 GO:GO:2001237 MGI_trans_name:Rb1cc1-008 Vega_translation:178636 Vega_translation:OTTMUSP00000045833 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000045833 OTTT:OTTMUST00000084213 UniParc:UPI000198D193
definition	note : transcript_id=ENSMUST00000160062 protein_id : ENSMUSP00000123876 translation : MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAI

name	Rb1cc1 (ENSMUSG00000025907) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084945 Vega_transcript:Rb1cc1-011 Uniprot/SPTREMBL:E9PX56 UCSC:uc007afr.2 EMBL:AC102781 EMBL:AC139064 GO:GO:0001889 GO:GO:0001934 GO:GO:0005634 GO:GO:0005737 GO:GO:0007254 GO:GO:0007507 GO:GO:0031965 GO:GO:0043066 GO:GO:0045793 GO:GO:1990316 GO:GO:2001237 MGI_trans_name:Rb1cc1-011 Vega_translation:178637 Vega_translation:OTTMUSP00000045832 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000045832 OTTT:OTTMUST00000084945 UniParc:UPI000198D194
definition	note : transcript_id=ENSMUST00000162795 protein_id : ENSMUSP00000124676 translation : MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVCTYSAGTDTNPIFLFNKEMILCDRAPAIPKATFSTENDMEIKVEESLMMPAVFHTVASRTQLAVEMYDVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSDYLQSIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRPDSLNEHEGSEKAEMKRSTELVLSPDMPRTTNTSLVTSFHKSMEHVAPDPTGTERGKELRESCQSTVQQEEASVDAKDSDLPFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPKIIQPFMLECHQTIAKLDNQNMKAIKGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLMIMLQNHRKLLDIKQKWCCFVMLHADQDGEKLQALLRLVIELLERVRIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKQLYEAEKSKRESFGKLFRKSFLRNRLFKGLDSWPSSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPLLCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLNEQKVSTSQASPQSAASPRIESTTGITTTTSPKTPPPLTVQDTLCPAVCPLEELSPDSIDAHTFDFETISHPNTEQPVHQASIDLDSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTSTRGNEGFGDRAALHVQLEKCRAAAQDSHSSIQTIKDDLCHFRTFVQKEQCDLANYLKCTAVEIRNIIEKVKCSLEITLKEKHQQELQSLKIEYECKLDALVKDSEENVNK

name	Rb1cc1 (ENSMUSG00000025907) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084200 Vega_transcript:Rb1cc1-003 Uniprot/SPTREMBL:F7CC56 UCSC:uc011whx.1 GO:GO:0001889 GO:GO:0001934 GO:GO:0005634 GO:GO:0005737 GO:GO:0007254 GO:GO:0007507 GO:GO:0031965 GO:GO:0043066 GO:GO:0045793 GO:GO:1990316 GO:GO:2001237 MGI_trans_name:Rb1cc1-003 Vega_translation:178638 Vega_translation:OTTMUSP00000045349 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000045349 OTTT:OTTMUST00000084200 UniParc:UPI0001889EB7
definition	codon_start : 2 note : transcript_id=ENSMUST00000161327 protein_id : ENSMUSP00000125348 translation : XAPAIPKATFSTENDMEIKVEESLMMPAVFHTVASRTQLAVEMYDVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSDYLQSIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRPDSLNEHEGSEKAEMKRSTELVLSPDMPRTTNTSLVTSFHKSMEHVAPDPTDWINVQDRPNDVESLVRKCFDSMSRLDPKIIQPFMLECHQTIAKLDNQNMKAIKGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLMIMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLERVRIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKQLYEAEKSKRESFGKLFRKSFLRNRLFKGLDSWPSSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPLLCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLNEQKVSTSQASPQSAASPRIESTTGITTTTSPKTPPPLTVQDTLCPAVCPLEELSPDSIDAHTFDFETISHPNTEQPVHQASIDLDSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTSTRGNEGFGDRAALHVQLEKCRAAAQDSHSSIQTIKDDLCHFRTFVQKEQCDLANYLKCTAVEIRNIIEKVKCSLEITLKEKHQQELQSLKIEYECKLDALVKDSEENVNKILKLKENLVSLEEALQNKDNEFTSIKHEKDAIVCVQQEKDQKLLEMEKIMHTQHCEIKELKQSREMALEDLKKLHDEKIESLRAEFQCLEQNHLKELEDTLHIRHTQEFEKVMTDHNMSLEKLKKENQQRIDQMLESHASTIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRTQQKEMLKSLLEQETENLRTEISKLNQKIHDNNESYQVGLSELRALMTIEKDQCISELISRHEEESNILKAELDNVTSLHRQAYEIEKKLKEQIVELQTRLNSELSALEKQKDEKITQQEEKYEALIQNLEKDKERLVKNHEQDKEHLIQELNFEKNKAVQTALDEFKVERELVEKELLEKVKHLENQIAKTPAFESAREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKQLEEEVSKLRTSSFLSSAPVAAAPELYGACAPELPGEPERSVMETADEGRLDSAMETSMMSVQENMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSLSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVSWNKKV

name	Rb1cc1 (ENSMUSG00000025907) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084948 Vega_transcript:Rb1cc1-012 Uniprot/SPTREMBL:F7CCJ3 GO:GO:0001889 GO:GO:0001934 GO:GO:0005634 GO:GO:0005737 GO:GO:0007254 GO:GO:0007507 GO:GO:0031965 GO:GO:0043066 GO:GO:0045793 GO:GO:1990316 GO:GO:2001237 MGI_trans_name:Rb1cc1-012 Vega_translation:178639 Vega_translation:OTTMUSP00000045836 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000045836 OTTT:OTTMUST00000084948 UniParc:UPI000198D195
definition	codon_start : 2 note : transcript_id=ENSMUST00000162257 protein_id : ENSMUSP00000125334 translation : XEFTSIKHEKDAIVCVQQEKDQKLLEMEKIMHTQHCEIKELKQSREMALEDLKKLHDEKIESLRAEFQCLEQNHLKELEDTLHIRHTQEFEKVMTDHNMSLEKLKKENQQRIDQMLESHASTIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRTQQKEMLKSLLEQETENLRTEISKLNQKIHDNNESYQVGLSELRALMTIEKDQCISELISRHEEESNILKAELDNVTSLHRQAYEIEKKLKEQIVELQTRLNSELSALEKQKDEKITQQEEKYEALIQNLEKDKERLVKNHEQDKEHLIQELNFEKNKAVQTALDEFKVERELVEKELLEKVKHLENQIAKTPAFESAREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKQLEEEVSKLRTSSFLSSAPVAAAPELYGACAPELPGEPERSVMETADEGRLDSAMETSMMSVQHCS

name	Rb1cc1 (ENSMUSG00000025907) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084202 Vega_transcript:Rb1cc1-005 Uniprot/SPTREMBL:F6TLJ4 UCSC:uc007aft.2 EMBL:AC102781 EMBL:AC139064 GO:GO:0001889 GO:GO:0001934 GO:GO:0005634 GO:GO:0005737 GO:GO:0007254 GO:GO:0007507 GO:GO:0031965 GO:GO:0043066 GO:GO:0045793 GO:GO:1990316 GO:GO:2001237 MGI_trans_name:Rb1cc1-005 Vega_translation:178640 Vega_translation:OTTMUSP00000045350 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000045350 OTTT:OTTMUST00000084202 UniParc:UPI0001889EB8
definition	note : transcript_id=ENSMUST00000159530 protein_id : ENSMUSP00000124220 translation : RDKDLIESLSEDRARLLEEKKQLEEEVSKLRTSSFLSSAPVAAAPELYGACAPELPGEPERSVMETADEGRLDSAMETSMMSVQENMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSLSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPASGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVSWNKKV

name
type	misc_feature
link
xref
definition	note : contig AC102781.5 1..86424(-1)

name
type	misc_feature
link
xref
definition	note : contig AC139064.13 1..180078(-1)

name	Rb1cc1 (ENSMUSG00000025907)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084201 Vega_transcript:OTTMUST00000084201 MGI_trans_name:Rb1cc1-004 OTTT:OTTMUST00000084201
definition	note : retained_intron note : transcript_id=ENSMUST00000159802

name	Rb1cc1 (ENSMUSG00000025907)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000085003 Vega_transcript:OTTMUST00000085003 MGI_trans_name:Rb1cc1-015 OTTT:OTTMUST00000085003
definition	note : processed_transcript note : transcript_id=ENSMUST00000159206

name	Rb1cc1 (ENSMUSG00000025907)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000085004 Vega_transcript:OTTMUST00000085004 MGI_trans_name:Rb1cc1-016 OTTT:OTTMUST00000085004
definition	note : retained_intron note : transcript_id=ENSMUST00000159661

name	Rb1cc1 (ENSMUSG00000025907)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000085346 Vega_transcript:OTTMUST00000085346 MGI_trans_name:Rb1cc1-017 OTTT:OTTMUST00000085346
definition	note : retained_intron note : transcript_id=ENSMUST00000161183

name	Rb1cc1 (ENSMUSG00000025907)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084215 Vega_transcript:OTTMUST00000084215 MGI_trans_name:Rb1cc1-010 OTTT:OTTMUST00000084215
definition	note : retained_intron note : transcript_id=ENSMUST00000159349

name	Rb1cc1 (ENSMUSG00000025907)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084203 Vega_transcript:OTTMUST00000084203 MGI_trans_name:Rb1cc1-006 OTTT:OTTMUST00000084203
definition	note : retained_intron note : transcript_id=ENSMUST00000162418

name	Rb1cc1 (ENSMUSG00000025907)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084204 Vega_transcript:OTTMUST00000084204 UCSC:uc007afu.2 MGI_trans_name:Rb1cc1-007 OTTT:OTTMUST00000084204
definition	note : retained_intron note : transcript_id=ENSMUST00000159656

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rb1cc1 (ENSMUSG00000025907)
Transcript ID	ENSMUST00000161327

Reports
substitution
cSNPs	6
Insertion	32
Deletion	31
SNPs	-1kb 6229369(c.-4911A>C), 6229381(c.-4899G>T), 6229425(c.-4855A>G), 6230255(c.-4025C>T), 6230357(c.-3923G>A), 6230440(c.-3840T>G), 6230663(c.-3617A>G), 6230670(c.-3610A>T), 6230698(c.-3582C>A), 6230706(c.-3574A>G), 6230707(c.-3573T>C), 6231089(c.-3191T>A), 6231653(c.-2627T>A), 6231795(c.-2485G>A), 6231876(c.-2404G>A), 6231957(c.-2323A>G), 6232500(c.-1780G>T), 6232961(c.-1319G>A), 6233078(c.-1202A>G), 6233869(c.-411T>G), 6234168(c.-112A>G), 6234181(c.-99C>T), 5'UTR CDS 6248461(c.1740C>T), 6249000(c.2279T>C), 6249702(c.2981A>G), 6249843(c.3122A>T), 6250082(c.3361C>G), 6263236(c.3934G>A), 3'UTR 6275214(c.939T>G), INTRON 6234658(c.120+259G>C), 6234723(c.120+324C>T), 6234864(c.120+465T>A), 6234926(c.120+527C>A), 6235007(c.120+608C>T), 6235008(c.120+609G>A), 6235014(c.120+615G>A), 6235024(c.120+625G>A), 6235070(c.120+671C>A), 6235167(c.120+768T>C), 6235288(c.120+889A>T), 6235923(c.120+1524T>C), 6235928(c.120+1529C>A), 6236226(c.120+1827G>A), 6236408(c.121-1854T>G), 6236493(c.121-1769T>C), 6236495(c.121-1767A>G), 6236681(c.121-1581T>C), 6236798(c.121-1464T>A), 6236813(c.121-1449A>G), 6236815(c.121-1447C>T), 6236870(c.121-1392A>G), 6237064(c.121-1198G>A), 6237199(c.121-1063C>G), 6237253(c.121-1009A>C), 6237454(c.121-808G>A), 6237559(c.121-703A>G), 6237795(c.121-467G>A), 6237895(c.121-367G>A), 6237953(c.121-309A>T), 6237992(c.121-270T>C), 6237993(c.121-269G>A), 6238034(c.121-228C>A), 6238145(c.121-117G>T), 6238642(c.323+178G>A), 6238741(c.323+277C>T), 6238838(c.323+374A>G), 6238866(c.323+402T>A), 6238908(c.323+444G>C), 6239345(c.324-607A>C), 6239820(c.324-132G>A), 6239909(c.324-43G>C), 6240788(c.636+410C>T), 6240946(c.636+568T>A), 6241326(c.636+948A>G), 6241391(c.636+1013A>C), 6241419(c.636+1041T>G), 6241463(c.636+1085T>G), 6241545(c.636+1167T>C), 6241688(c.636+1310G>A), 6241730(c.636+1352C>G), 6241771(c.636+1393A>G), 6241931(c.636+1553C>T), 6241996(c.636+1618G>A), 6242170(c.636+1792A>T), 6242171(c.636+1793A>T), 6242381(c.637-1724G>A), 6242507(c.637-1598G>A), 6242947(c.637-1158C>T), 6243141(c.637-964A>C), 6243152(c.637-953A>G), 6243194(c.637-911G>T), 6243224(c.637-881G>A), 6243711(c.637-394C>T), 6244533(c.807+258T>C), 6244699(c.808-96G>A), 6245575(c.1262-23A>G), 6245777(c.1323+118T>A), 6245786(c.1323+127G>C), 6245947(c.1323+288A>T), 6246006(c.1323+347T>C), 6246803(c.1324-903A>T), 6247061(c.1324-645T>C), 6247149(c.1324-557A>G), 6247682(c.1324-24G>A), 6250359(c.3446+192C>A), 6250633(c.3446+466G>A), 6251832(c.3446+1665A>C), 6256244(c.3447-4686C>T), 6256583(c.3447-4347T>A), 6257244(c.3447-3686T>A), 6257325(c.3447-3605C>T), 6257326(c.3447-3604A>G), 6257328(c.3447-3602C>A), 6257963(c.3447-2967A>G), 6257995(c.3447-2935T>G), 6258029(c.3447-2901T>G), 6258076(c.3447-2854G>T), 6258488(c.3447-2442C>A), 6258494(c.3447-2436G>C), 6258520(c.3447-2410G>A), 6258623(c.3447-2307C>T), 6258832(c.3447-2098T>G), 6258966(c.3447-1964G>A), 6259404(c.3447-1526T>A), 6259671(c.3447-1259A>G), 6260245(c.3447-685C>T), 6260426(c.3447-504G>A), 6260620(c.3447-310A>G), 6260649(c.3447-281A>C), 6260893(c.3447-37C>T), 6261336(c.3612+241A>T), 6261418(c.3612+323C>T), 6261515(c.3612+420A>G), 6261518(c.3612+423G>A), 6262473(c.3613-361C>T), 6263343(c.3962+79T>C), 6263418(c.3962+154G>C), 6263428(c.3962+164T>A), 6263942(c.3963-600C>G), 6264024(c.3963-518A>G), 6264242(c.3963-300A>G), 6264379(c.3963-163C>G), 6264382(c.3963-160G>A), 6264757(c.4011+167G>A), 6264919(c.4011+329T>A), 6264966(c.4011+376T>A), 6265251(c.4012-323T>C), 6265460(c.4012-114A>T), 6265949(c.4059+328T>C), 6266600(c.4059+979A>T), 6267422(c.4060-1276T>A), 6267463(c.4060-1235C>T), 6267502(c.4060-1196C>A), 6268123(c.4060-575G>A), 6268129(c.4060-569C>T), 6268161(c.4060-537G>A), 6268605(c.4060-93G>A), 6269200(c.4118+444C>G), 6269658(c.4118+902A>T), 6269905(c.4119-786T>C), 6269970(c.4119-721G>C), 6270001(c.4119-690G>A), 6270003(c.4119-688A>G), 6270024(c.4119-667A>G), 6270050(c.4119-641G>C), 6270065(c.4119-626T>C), 6270079(c.4119-612A>C), 6270150(c.4119-541C>T), 6270169(c.4119-522T>C), 6270247(c.4119-444C>T), 6270452(c.4119-239A>G), 6270570(c.4119-121C>T), 6270865(c.4255+38G>A), 6271091(c.4255+264G>T), 6271128(c.4255+301T>C), 6271329(c.4255+502G>A), 6271727(c.4255+900C>T), 6271790(c.4256-911C>T), 6271910(c.4256-791C>T), 6272048(c.4256-653G>A), 6272168(c.4256-533G>T), 6272267(c.4256-434G>C), 6272292(c.4256-409C>T), 6272362(c.4256-339C>T), 6272392(c.4256-309T>G), 6272407(c.4256-294A>G), 6272447(c.4256-254C>A), 6272954(c.4326+183A>G), 6272966(c.4326+195G>C), 6273107(c.4326+336A>G), +1kb 6275678(c.1403T>C), 6276036(c.1761C>T), 6276169(c.1894G>A), 6276171(c.1896G>A), 6276250(c.1975T>A), 6276358(c.2083A>G), 6276439(c.2164A>G), 6276455(c.2180C>T), 6276607(c.2332T>C), 6276663(c.2388C>T), 6276725(c.2450T>C), 6277086(c.2811C>T), 6277147(c.2872C>T), 6277379(c.3104T>C), 6277411(c.3136G>T), 6277737(c.3462T>G), 6277890(c.3615T>A), 6278197(c.3922A>G), 6278399(c.4124G>A), 6280020(c.*5745G>A),
Insertions	-1kb 6230610 (c.-3670_-3669insAT), 6231060 (c.-3220_-3219insT), 6231774 (c.-2506_-2505insC), 6232387 (c.-1893_-1892insA), 5'UTR CDS 3'UTR 6274364 (c.97_98dupTT), INTRON 6235815 (c.120+1414_120+1416dupAAA), 6235870 (c.120+1477dupA), 6236738 (c.121-1519_121-1514dupATAGTA), 6236798 (c.121-1464_121-1463insA), 6239137 (c.323+674_323+675insCCTTTT), 6241863 (c.636+1492dupT), 6241870 (c.636+1492dupT), 6241908 (c.636+1530_636+1531insATTT), 6244422 (c.807+150_807+153dupGTCT), 6245698 (c.1323+39_1323+40insCC), 6250264 (c.3446+104dupA), 6252259 (c.3446+2092_3446+2093insAT), 6257401 (c.3447-3528dupT), 6258051 (c.3447-2875dupT), 6258792 (c.3447-2136dupC), 6260607 (c.3447-323_3447-322dupCA), 6261183 (c.3612+89_3612+90insAT), 6261895 (c.3612+796_3612+804dupAATAGCATA), 6262047 (c.3613-789_3613-787dupTTT), 6263428 (c.3962+173_3962+175dupAAA), 6264670 (c.4011+82dupT), 6266191 (c.4059+581_4059+586dupGTTTTT), 6267792 (c.4060-904_4060-899dupGTTTGT), +1kb 6276267 (c.1989_1992dupGAAC), 6276275 (c.2000_2001insA), 6276284 (c.2009_2010insA), 6276590 (c.*2315dupT),
Deletions	-1kb 6229791 (c.-4488_-4484delCAAAA), 6232782 (c.-1497_-1490delATCGCCCC), 6233722 (c.-557_-553delAAAAA), 5'UTR CDS 3'UTR 6274820 (c.552delA), INTRON 6234512 (c.120+117_120+123delGTTTTTT), 6234630 (c.120+232delC), 6235517 (c.120+1123_120+1126delAGAA), 6237096 (c.121-1162_121-1156delCTTCTTT), 6237711 (c.121-550_121-548delTTT), 6237728 (c.121-533_121-530delATAT), 6239051 (c.323+594delG), 6239057 (c.323+594delG), 6239467 (c.324-484_324-483delCA), 6241541 (c.636+1164delA), 6245676 (c.1323+18delT), 6251426 (c.3446+1261_3446+1262delTT), 6251838 (c.3446+1674_3446+1677delTATT), 6252227 (c.3446+2061_3446+2062delTT), 6257831 (c.3447-3093_3447-3092delTC), 6259121 (c.3447-1806delT), 6259852 (c.3447-1077delT), 6259917 (c.3447-1003delT), 6259926 (c.3447-1003delT), 6262025 (c.3613-808_3613-802delAAAAAAA), 6267067 (c.4059+1460_4059+1463delTTTT), 6270109 (c.4119-581delA), 6270416 (c.4119-273_4119-272delCT), 6272345 (c.4256-346_4256-345delGT), 6272778 (c.4326+9delT), +1kb 6276476 (c.2202_2206delTTTTT), 6278112 (c.3838delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	5
synonymous substitutions	6248461 (p.Phe580Phe),
non-synonymous substitutions	6249000 (p.Val760Ala), 6249702 (p.Gln994Arg), 6249843 (p.Tyr1041Phe), 6250082 (p.Leu1121Val), 6263236 (p.Ala1312Thr),
B6 transcript (ENSMUST00000161327)	APAIPKATFSTENDMEIKVEESLMMPAVFHTVASRTQLAVEMYDVAKKLCSFCEGLVHDE HLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSDYLQSIEDIKLKLTHLGTAVSVMAKIP LLECLTRHSYRECLGRPDSLNEHEGSEKAEMKRSTELVLSPDMPRTTNTSLVTSFHKSME HVAPDPTDWINVQDRPNDVESLVRKCFDSMSRLDPKIIQPFMLECHQTIAKLDNQNMKAI KGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLMI MLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLER VRIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKQLYEAEKSKRESFGKLF RKSFLRNRLFKGLDSWPSSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPLL CDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLNEQKVSTSQASPQSAASPRIESTTGI TTTTSPKTPPPLTVQDTLCPAVCPLEELSPDSIDAHTFDFETISHPNTEQPVHQASIDLD SLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTST RGNEGFGDRAALHVQLEKCRAAAQDSHSSIQTIKDDLCHFRTFVQKEQCDLANYLKCTAV EIRNIIEKVKCSLEITLKEKHQQELQSLKIEYECKLDALVKDSEENVNKILKLKENLVSL EEALQNKDNEFTSIKHEKDAIVCVQQEKDQKLLEMEKIMHTQHCEIKELKQSREMALEDL KKLHDEKIESLRAEFQCLEQNHLKELEDTLHIRHTQEFEKVMTDHNMSLEKLKKENQQRI DQMLESHASTIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRTQQ KEMLKSLLEQETENLRTEISKLNQKIHDNNESYQVGLSELRALMTIEKDQCISELISRHE EESNILKAELDNVTSLHRQAYEIEKKLKEQIVELQTRLNSELSALEKQKDEKITQQEEKY EALIQNLEKDKERLVKNHEQDKEHLIQELNFEKNKAVQTALDEFKVERELVEKELLEKVK HLENQIAKTPAFESAREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLI AEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKQL EEEVSKLRTSSFLSSAPVAAAPELYGACAPELPGEPERSVMETADEGRLDSAMETSMMSV QENMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSLSSVSSRHSEKIAIRDFQVGDLV LIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVMEKEYCQA KKAQNRFKVPLGTKFYRVKAVSWNKKV*
MSMv4 transcript	APAIPKATFSTENDMEIKVEESLMMPAVFHTVASRTQLAVEMYDVAKKLCSFCEGLVHDE HLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSDYLQSIEDIKLKLTHLGTAVSVMAKIP LLECLTRHSYRECLGRPDSLNEHEGSEKAEMKRSTELVLSPDMPRTTNTSLVTSFHKSME HVAPDPTDWINVQDRPNDVESLVRKCFDSMSRLDPKIIQPFMLECHQTIAKLDNQNMKAI KGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLMI MLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLER VRIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKQLYEAEKSKRESFGKLF RKSFLRNRLFKGLDSWPSSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPLL CDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLNEQKVSTSQASPQSAASPRIESTTGI TTTTSPKTPPPLTVQDTLCPAVCPLEELSPDSIDAHTFDFETISHPNTEQPVHQASIDLD SLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTST RGNEGFGDRAALHVQLEKCRAAAQDSHSSIQTIKDDLCHFRTFVQKEQCDLANYLKCTAV EIRNIIEKVKCSLEITLKEKHQQELQSLKIEYECKLDALAKDSEENVNKILKLKENLVSL EEALQNKDNEFTSIKHEKDAIVCVQQEKDQKLLEMEKIMHTQHCEIKELKQSREMALEDL KKLHDEKIESLRAEFQCLEQNHLKELEDTLHIRHTQEFEKVMTDHNMSLEKLKKENQQRI DQMLESHASTIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRTQQ KEMLKSLLEQETENLRTEISKLNQKIHDNNESYRVGLSELRALMTIEKDQCISELISRHE EESNILKAELDNVTSLHRQAFEIEKKLKEQIVELQTRLNSELSALEKQKDEKITQQEEKY EALIQNLEKDKERLVKNHEQDKEHLIQELNFEKNKAVQTAVDEFKVERELVEKELLEKVK HLENQIAKTPAFESAREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLI AEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKQL EEEVSKLRTSSFLSSAPVAAAPELYGACAPELPGEPERSVMETADEGRLDSTMETSMMSV QENMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSLSSVSSRHSEKIAIRDFQVGDLV LIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVMEKEYCQA KKAQNRFKVPLGTKFYRVKAVSWNKKV*
homology	99.66 (1468 / 1468)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rb1cc1 (ENSMUSG00000025907)
Transcript ID	ENSMUST00000161327


..........TAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCTCTTC
TAGAATTTTAACATGTGGCTATAGGAATTTTTTTTGAAGCAATTTTTACATGGCTTAGAT
TTACTGTACTTTCTATAATGTATTGTAAAAATCTTAAACACAAACTCTGTGTTTAAATAT
ACATGTATGTTCGTTTATACCTTTCACCATTATTTAAAACCCCCCAAAATAATTTTGTAT
GCTGCCTGTATTTTATGGGTTCACTTTTAGATATGAAAAACATATGCAGCCGGGCGGTGG
CAGTGCACACCTTTAATCCCAGCACTTGGGAGGTAGAGGCAGGTGGATTTCTGAGTTCAA
GGCCAGCCTGGTCTACAAAAGTTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCT
GTCTCAATAAAACAAAAACAAAACAAAACAAAACAAAAAAAAAAAAAAAACCATAGGCAT
TTAATTCATTTAATTCACAGCCAGTTGATTGTGGTATCTAATTTAAAAAACAGGAAACTT
TTACTACTATCTTTTTGAGAAAAGCCTTAGAATGAAATTCAGTAGTCTAAGGGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATGAAGTGTTTTTATAAAGGTACTACA
AATATGTAATAACTGGATTTTATTTTTCTAAGTGTGGCTGATCTTAAGCATGCCATTCAA
AGCAAATACAAGATTGCTATTCAGCACCAGGTTCTGGTGGTCAATGGAGGAGAATGCATG
GCTGCAGATCGAAGAGTGTGTACTTACAGCGCTGGGACGGTAGGTGTCAAAGATCCTCTA
CTGCATAGTCTGCTTTCTTAGCAGATGGGAGCAGGGGCTTTGTTTTTGTATTAAGGGCAG
TACACAAGTTCATCATTTATAACACTTACATTTTTGTCATTTCTGCATTTTTTGATATAG
GACACAAATCCAATTTTTCTTTTTAATAAAGAAATGATCTTATGTGACCG
TGCACCTGCTATTCCTAAAGCTACCTTTTCAACAGAAAATGACATGGAAATAAAAGTTGAAGAGTCTCTTATGATGCCTGCAGTTTTCCACACTGTTGCTTCAAGGACACAGCTTGCAGTG
GTATGATATAAACAATTCCTTTAAC..........ATTTTCCTTTTTCATTCTCAAACAG
GAAATGTATGACGTTGCCAAGAAGCTCTGCTCTTTCTGTGAAGGGCTTGTCCATGATGAACATCTTCAGCACCAAGGCTGGGCTGCAATCATGGCCAATCTGGAGGACTGTTCAAATTCATACCAAAAACTTCTTTTCAAGTTTGAAAGTATTTATTCTGATTATCTTCAATCCATAGAAGACATCAAGTTAAAACTTACTCA
GTATGTTTATCATTATGTGAATGTT..........ACTGACTCATGTTTTGTATCTTAAG
TTTAGGAACTGCTGTTTCAGTAATGGCCAAGATTCCACTATTGGAGTGCCTAACCAGACATAGTTACAGGGAATGTTTGGGAAGACCGGATTCTTTGAATGAACATGAAGGCTCAGAGAAAGCTGAGATGAAAAGATCTACTGAACTGGTGCTCTCTCCTGATATGCCTAGAACAACGAACACATCCTTGGTAACCTCATTTCACAAGTCAATGGAGCATGTAGCTCCAGATCCCACCG
GTACTGAACGTGGCAAAGAACTTAG..........CCTTTTTTTAATGTTTCTTTGTTAG
ACTGGATAAATGTTCAAGATAGACCCAATGATGTGGAATCTCTGGTCAGGAAGTGCTTTGATTCTATGAGCAGG
GTAAGTTGTGTGTGCGTGCGTGCGC..........TCATATATGTTTCCTTCTCATTTAG
CTTGACCCAAAGATTATTCAACCATTTATGTTAGAATGCCATCAAACTATTGCCAAACTTGATAATCAGAATATGAAAGCCATTAAAGGGCTTGAAGATCGGCTGTATGCCTTGGACCAGATGATTGCTAGCTGTAGCCGGCTGGTAAATGAACAGAAAGAGCTTGCTCAG
GTATCGTGTTTATGACCACTTGATT..........GCTTATGTCATTTTCCTTCCCAAAG
GGATTTTTAGCTAATCAGATGAGAGCTGAAAACTTGAAGGATGCATCTGTGTTACCTGATCTGTGTCTGAGTCATGCAAATCAACTAATGATTATGTTGCAAAACCACAGAAAACTGTTGGATATTAAACAGAAGTGCACCACTGCCAAACAAGAGCTAGCAAACAATCTCCACGTCAGACTGAA
GTAAGAGATTCCGTCAGACTTCAGT..........GAAAACAATGAATCTTTTTCTATAG
GTGGTGTTGTTTTGTGATGCTTCATGCTGATCAAGATGGAGAAAAACTGCAGGCACTGCTCCGCCTTGTAATAGAGCTGTTAGAAAGAGTCAGAATTGTTGAGGCTCTTAGTACAGTTCCTCAGATGTATTGCCTAGCTGTTGTTGAGGTTGTAAGAAGAAAAATGTTCATTAAACACTACAGAGAG
GTAAGCAATTCTAATTATTTAATTA..........TTAACATAAATGTTCCTCTTCTAAG
TGGGCTGGTGCTTTAGTCAAAGACGGAAAACAACTATATGAAGCTGAAAAGTCAAAAAGGGAATCCTTTGGGAAATTATTTA
GTAAGTATTAATTTATTTACCCTTT..........CCGTGTTCCTGGTTTCTTTGTACAG
GGAAGTCCTTTTTAAGAAATCGTCTGTTTAAAGGACTGGACTCCTGGCCTTCCTCATTTTGT
GTATGTATTTTTTTTTTTCTAACTA..........GATAAACTTTTTTTTCCATTTATAG
ACTCAGAAGCCTCGAAAATTTGACTGTGAACTTCCAGATATATCATTAAAAGATTTACAGTTTCTTCAATCATTTTGTCCTTCAGAAGTGCAGCCATTCCTCAG
GTAACAGCCACGAATACTTTTGAAT..........CTAAAAATCTGTCATTCTTTTTCAG
GGTCCCCTTACTTTGTGACTTTGAACCTCTACACCAGCATGTACTTGCCCTACATAATTTGGTAAAAGCAGCACAAAGTTTGGATGAAATGTCACAGACTATTACAGATCTCCTAAATGAACAAAAG
GCAAATTAGTTGTTTTAAATATTTT..........TTAAGACTTTAACTCTGTGTTTCAG
GTATCCACAAGTCAGGCATCCCCACAGTCAGCTGCTTCTCCAAGAATAGAAAGTACAACAGGCATTACAACCACTACCTCACCAAAAACTCCTCCTCCACTAACTGTTCAGGACACCTTATGTCCGGCAGTGTGTCCCTTAGAAGAATTATCTCCAGATAGTATCGATGCTCATACATTTGATTTTGAAACCATCTCCCATCCAAACACAGAACAACCTGTTCACCAAGCTTCTATAGACTTGGATTCATTAGCAGAAAGCCCTGAGTCTGACTTTATGTCTGCTGTGAATGAGTTTGTGATAGAAGAAAATTTATCGTCTCCAAACCCTATAAGTGATCCACAAAGTCCAGAAATGATGGTGGAGTCACTTTACTCTTCAGTCATCAATGCAATAGATAGTAGGCGTATGCAAGACACAAGTACACGTGGAAACGAGGGCTTTGGGGATCGGGCTGCTCTACATGTCCAGCTGGAGAAATGCAGAGCTGCTGCACAAGACTCTCACAGCAGTATACAAACCATCAAGGACGATCTGTGCCATTTCAGAACATTTGTACAAAAAGAACAGTGTGACTTAGCAAATTATTTAAAATGTACAGCTGTAGAAATAAGAAATATTATTGAAAAAGTAAAATGTTCTCTAGAAATAACACTAAAGGAAAAGCATCAGCAAGAACTCCAATCTTTAAAAATTGAGTATGAATGTAAACTTGATGCTCTAGCAAAAGACAGTGAAGAAAATGTAAATAAAATTTTAAAATTGAAAGAAAATTTAGTATCCCTTGAAGAGGCTTTACAAAATAAAGACAATGAATTCACTTCGATTAAACATGAAAAGGATGCTATTGTCTGTGTGCAGCAAGAAAAGGATCAGAAGTTGTTAGAGATGGAAAAGATAATGCATACTCAACATTGTGAAATTAAAGAACTGAAGCAGTCACGAGAGATGGCATTAGAAGACCTGAAAAAGCTGCATGATGAAAAAATCGAGTCATTGAGAGCTGAATTTCAGTGCTTAGAACAAAATCACCTGAAGGAATTAGAGGACACACTGCACATCAGGCACACACAGGAGTTTGAGAAAGTTATGACAGACCACAATATGTCTTTGGAGAAATTAAAAAAAGAAAATCAGCAAAGAATTGACCAGATGCTAGAATCTCATGCCTCAACTATTCAGGAAAAAGAGCAACAGCTGCAGGAGTTGAAACTCAAAGTTTCTGACTTGTCAGACATGAGATGTAAGTTAGAGGTTGAACTTGCACTAAAGGAAGCAGAAACAGATGAGATAAAGATCTTGTTGGAAGAGAGCAGAACACAGCAGAAGGAAATGCTGAAGTCTTTACTTGAACAAGAGACCGAAAACTTAAGAACAGAAATAAGTAAACTAAACCAAAAAATTCATGATAATAATGAGAGTTACCGGGTGGGTTTGTCAGAGTTAAGAGCTTTAATGACAATTGAAAAAGATCAGTGCATTTCAGAGTTAATCAGTAGACATGAAGAAGAATCTAATATACTTAAGGCTGAATTAGACAATGTTACATCTTTGCATCGCCAAGCATTTGAAATAGAAAAAAAACTGAAAGAACAAATAGTTGAATTGCAGACTAGATTGAACTCAGAATTGAGTGCTCTTGAAAAACAGAAAGATGAAAAAATAACCCAACAAGAAGAGAAGTATGAAGCACTTATCCAGAACCTTGAGAAAGACAAGGAGAGACTGGTCAAGAACCACGAGCAAGACAAAGAACACTTAATTCAGGAGCTTAATTTTGAAAAAAACAAAGCTGTTCAAACTGCAGTAGATGAATTTAAGGTGGAGAGAGAACTTGTTGAGAAAGAGTTATTAGAAAAAGTTAAACATCTTGAGAATCAAATAGCCAAAAC
GTAAGTATTAAGTTTAGAATGTAAT..........TAAAAATGTCTTTTCAATTTTTAAG
TCCTGCCTTTGAGTCAGCCAGAGAAGATTCTTCAAGCTTAGTTGCGGAACTTCAAGAGAAACTTCAAGAAGAAAAAGCTAAGTTTCTGGAACAACTTGAAGAACAAGAGAAAAGAAAGAATGAGGAAATGCAAAATGTCAGAACCTCTTTGATTGCTGAGCAGCAG
GTGTGTTTGAGATCTGAGGAAGCTT..........TTGACTATTACTACTGTTGTTTCAG
ACCAACTTTAACACAGTCTTAACAAGAGAGAAAATGAGGAAAGAAAACATAATAAATGATCTTAGTGATAAGCTAAAAAGTACAATGCAGCAGCAAGAGCGGGATAAAG
GTTAGTGTTGTCTTAATATGATTTT..........TGTGTCTTTGCCTTTGGGGTCTTAG
ATTTGATAGAGTCGCTCTCTGAGGACCGAGCTCGTTTGCTTGAAGAGAAGAAGCAGCTTGAAGAGGAAGTGAGTAAACTCCGCACTAGCAGTTTTCTTTCCTCAGCACCTGTGGCTGCAGCCCCAGAGCTCTATGGTGCGTGTGCACCTGAGCTCCCAGGGGAGCCAGAGAGATCAGTCATGGAGACGGCAGATGAAGGAAGACTGGATTCCACAATGGAGACAAGCATGATGTCTGTCCA
GTAAGTAGGCTTATTTTCCATTCAG..........CAAACAACCATTCTTTCACTTTTAG
AGAAAACATGTTATCTGAAGAGAAGCAGAGGATCATGCTCCTAGAACGG
GTGAGCAGACTCTCTGTGAAGTACT..........TCACAGGTCTGTTTTTTCCTTGTAG
ACATTGCAGTTGAAAGAAGAAGAAAACAAGCGGTTAAATCAAAGACTG
GTGAGTTCTTTTGGTTATATCTCTT..........GCATGATTCAACTTTTTTGTCTCAG
ATGTCTCAGAGTTTGTCCTCAGTCTCTTCAAGGCATTCTGAAAAAATAGCCATTAGAGA
GTAAGTATCTCGTTTTTATTTTGTG..........AAGACAATAACCTACTTCTCCTTAG
TTTTCAGGTGGGAGATTTGGTTCTCATCATCCTAGATGAGCGGCACGACAATTATGTATTGTTTACTGTTAGTCCTACTTTATATTTTCTGCACTCAGAGTCTCTTCCTGCCCTGGATCTCAAACCAGGTGAGGGAG
GTAAGTGCGCATACACTTGTAAGTA..........TGAAAATATATTACCAATTTATTAG
CTTCAGGTGCATCTAGAAGACCCTGGGTCCTTGGGAAAGTAATGGAAAAGGAATACTGTCAAGCCAAAAAG
GTAAGAGTTAACCCTGTAATAGTAC..........TTCATGTGTTCTCTTTCCTTCTTAG
GCACAAAACAGATTTAAAGTTCCTTTGGGGACAAAGTTTTACAGAGTGAAAGCTGTGTCATGGAATAAGAAAGTATAGCCACAGAAGAAATCTCTACATCTCATACCATTTTTGATTTGTCCTCCAGTGCTGATAAACTACTCTAAAAACAGCTGGCCATTGTTGGGTTTTTTTTTGTTGTTTGTTTGTTTGTTTGTTTTTACAAAAGTCAACATAACAATATACTTCATTGGTGGACTGCACTTACCTTTTAAGTGGCTACATCTTAGGAACAATAAATTTATTAAAATTCTTGGCTGAATCAAAATGGTTTTGTTTTGTTTCCACCCAAATAACTAGAAATTCGGACCAAAATAGATGTTTTCCAAGGGCAGAGCCTGCACTGTGGCTTGTGACTAGCCTCATTAGTTGCCTGTTAATAAACATTAGCTGAATAGTTACCAGTGTTGTTACCAGCATTTGTCCTCTTGTGAATTCAAGAGTCCTCGCACTCTTTAACATGTTCTTTATAAAATGTATAAACCCTTCCAAACTATTTAAAGAGGAGTGTTATTGCATGCAGATAATCATAATTTTGAGTTTGCCTCAGAAGACTACTAAAGCAAATTTGTTCATTTTTTTTTAAAAAAATGCCCTTTAATGTTTCAAAAAAAAATAACAGTGTAATTTGACTGACTTTAAGATCAGCCATAAATAATGAGCAGTCTTCAAAAGCACTTTTCACACAGATCATCTGGGCTCCAGGGAGGAAGAGTCTGTGCCACTGATGTTTTCAAGTGCAGGACTCACTCAAACCTCTCAGCATCTTAGGACTGTTTCAAGTAATCATATTGATGAACTCGTAATTCATGGTTGACCTTCAGAAGAAGATATTCATTGTATATTAACATTTAGAGGTCATTTAAATAACAAAAGTCTGTATTGTAAAGGACCTGTACAATTTTAAGACAATAAAGAATTGAAAGTGTAAATGTGTGTGCCTTTTAAAGGTTACATTTTAAATATATTGCGTGATTGCTGGGAAAGGTGAAAAAAATGTTCTGTATCAAAGAGAAACCTGTTTATTAAAAAATGTTGTTTGTATCCTATGTAACAGGGTGAAGTGGTGTTCTGTGGAACAGAACCATGTAAACTCAAGGTTTAAAAGCTGGCACTGAACAAAGATATTGAAGTAGCTAGGCTAGTTGATTGGAAAGAGTTTCTTCAGGGTTGTTGTTAGCAGTAATAAATGATTCTTTTTCAGAAATATTTAATTTCTCCATAAAAATAAGTTGGATATTTTTATAAATATGTAATCTAATAGAATGAAAATGGAATAAACATAGTGTATAGAATACCTAATTCAAAAACATATTAATGAATAAACGAACAAATGATTTC
ATGTTTCTATTCAGTCCTTCAATGACATCTTTATATATAGACTACAAGTGTAACATGACT
TTATGTATTTTTAAAACAGTTGTATTTGTGATTGAGTCTGCTAGTGCAGTCTATTTCACT
TAATTGGTGCTCTTCAGATTTAATATATGGTTTTATGCTGTGGAATTACTGTGTGTTCTG
ACACACTAACTCTCTTTCGTTAACACTGAGTCTTGTGGTCGTTGATTGTCTTTGTTACCC
AGTACTTTCATATTCATCTTACCAGTGTTCACACACATGTTCCAAGCAAGTGAGAACTAA
AAAGATTTTGTTACAAAGAAAACAAAACAATTCCAGAAGCCTAAATTCATTGAGCTTTTG
TTTTTACATAGTTAAAGGCAATATGAACTTTGCAGCTAGAATGAATACCTGACTTTCAGT
CTCAGATGTGGCTTTTAGATAAAGTTCCACAAATGGACTCATTGTCTGATGTCTAAAACA
GGGTACTGGAACCTATGTAATATAGTTTGCACTTTCAATGCAAAAATTTTTAGGTATGTG
TTCAGTACTCAACATGTTAACTGTTGTAAAGGTTTATACGGTATAGTCTTGAGAGGGACA
GAAATGTATAGGGGCCCCACAGAGTTCCAGCATCACAGGAGGCTGAGGCAGGAGCATTTG
AGCAACAGAGAAAGACAACATCTGAAGAACAGGTGGGGAAAAACGGCTTTTACTGTGAAC
TTTTAAAGAATGCTTATGTTACATATGTTTATTGTGACAGTGGTAATTTAATATAATAAA
GACATTATATATGCCTGGCTCATGCCTATAAATGCAGCACTCAAGCATTTGAAGCAAGAG
AAGAAGACCCTGTGTCTCAGAGAAAAATAAGTAAAAGTGATGTATAGAACTAAAATTAAT
TTTTAGTTTTGAAAAAGTTCATAAGGTATAAAAGCAGTTTTTAAAAATTTTATTGTAGCC
CCTAATGTTTCTTAGATTTTTCATGTCACACTAAATTATA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCTCTTC TAGAATTTTAACATGTGGCTATAGGAATTTTTTTTGAAGCAATTTTTACATGGCTTAGAT TTACTGTACTTTCTATAATGTATTGTAAAAATCTTAAACACAAACTCTGTGTTTAAATAT ACATGTATGTTCGTTTATACCTTTCACCATTATTTAAAACCCCCCAAAATAATTTTGTAT GCTGCCTGTATTTTATGGGTTCACTTTTAGATATGAAAAACATATGCAGCCGGGCGGTGG CAGTGCACACCTTTAATCCCAGCACTTGGGAGGTAGAGGCAGGTGGATTTCTGAGTTCAA GGCCAGCCTGGTCTACAAAAGTTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCT GTCTCAATAAAACAAAAACAAAACAAAACAAAACAAAAAAAAAAAAAAAACCATAGGCAT TTAATTCATTTAATTCACAGCCAGTTGATTGTGGTATCTAATTTAAAAAACAGGAAACTT TTACTACTATCTTTTTGAGAAAAGCCTTAGAATGAAATTCAGTAGTCTAAGGGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATGAAGTGTTTTTATAAAGGTACTACA AATATGTAATAACTGGATTTTATTTTTCTAAGTGTGGCTGATCTTAAGCATGCCATTCAA AGCAAATACAAGATTGCTATTCAGCACCAGGTTCTGGTGGTCAATGGAGGAGAATGCATG GCTGCAGATCGAAGAGTGTGTACTTACAGCGCTGGGACGGTAGGTGTCAAAGATCCTCTA CTGCATAGTCTGCTTTCTTAGCAGATGGGAGCAGGGGCTTTGTTTTTGTATTAAGGGCAG TACACAAGTTCATCATTTATAACACTTACATTTTTGTCATTTCTGCATTTTTTGATATAG GACACAAATCCAATTTTTCTTTTTAATAAAGAAATGATCTTATGTGACCG
1	EXON 1	6234279	6234399	-	0	121	TGCACCTGCTATTCCTAAAGCTACCTTTTCAACAGAAAATGACATGGAAATAAAAGTTGA AGAGTCTCTTATGATGCCTGCAGTTTTCCACACTGTTGCTTCAAGGACACAGCTTGCAGT G
	INTRON 1 - 2	6234400	6238261			3862	GTATGATATAAACAATTCCTTTAAC..........ATTTTCCTTTTTCATTCTCAAACAG
2	EXON 2	6238262	6238464	0	2	203	GAAATGTATGACGTTGCCAAGAAGCTCTGCTCTTTCTGTGAAGGGCTTGTCCATGATGAA CATCTTCAGCACCAAGGCTGGGCTGCAATCATGGCCAATCTGGAGGACTGTTCAAATTCA TACCAAAAACTTCTTTTCAAGTTTGAAAGTATTTATTCTGATTATCTTCAATCCATAGAA GACATCAAGTTAAAACTTACTCA
	INTRON 2 - 3	6238465	6239951			1487	GTATGTTTATCATTATGTGAATGTT..........ACTGACTCATGTTTTGTATCTTAAG
3	EXON 3	6239952	6240190	2	1	239	TTTAGGAACTGCTGTTTCAGTAATGGCCAAGATTCCACTATTGGAGTGCCTAACCAGACA TAGTTACAGGGAATGTTTGGGAAGACCGGATTCTTTGAATGAACATGAAGGCTCAGAGAA AGCTGAGATGAAAAGATCTACTGAACTGGTGCTCTCTCCTGATATGCCTAGAACAACGAA CACATCCTTGGTAACCTCATTTCACAAGTCAATGGAGCATGTAGCTCCAGATCCCACCG
	INTRON 3 - 4	6240191	6240304			114	GTACTGAACGTGGCAAAGAACTTAG..........CCTTTTTTTAATGTTTCTTTGTTAG
4	EXON 4	6240305	6240378	1	0	74	ACTGGATAAATGTTCAAGATAGACCCAATGATGTGGAATCTCTGGTCAGGAAGTGCTTTG ATTCTATGAGCAGG
	INTRON 4 - 5	6240379	6244104			3726	GTAAGTTGTGTGTGCGTGCGTGCGC..........TCATATATGTTTCCTTCTCATTTAG
5	EXON 5	6244105	6244275	0	0	171	CTTGACCCAAAGATTATTCAACCATTTATGTTAGAATGCCATCAAACTATTGCCAAACTT GATAATCAGAATATGAAAGCCATTAAAGGGCTTGAAGATCGGCTGTATGCCTTGGACCAG ATGATTGCTAGCTGTAGCCGGCTGGTAAATGAACAGAAAGAGCTTGCTCAG
	INTRON 5 - 6	6244276	6244794			519	GTATCGTGTTTATGACCACTTGATT..........GCTTATGTCATTTTCCTTCCCAAAG
6	EXON 6	6244795	6244979	0	2	185	GGATTTTTAGCTAATCAGATGAGAGCTGAAAACTTGAAGGATGCATCTGTGTTACCTGAT CTGTGTCTGAGTCATGCAAATCAACTAATGATTATGTTGCAAAACCACAGAAAACTGTTG GATATTAAACAGAAGTGCACCACTGCCAAACAAGAGCTAGCAAACAATCTCCACGTCAGA CTGAA
	INTRON 6 - 7	6244980	6245157			178	GTAAGAGATTCCGTCAGACTTCAGT..........GAAAACAATGAATCTTTTTCTATAG
7	EXON 7	6245158	6245344	2	0	187	GTGGTGTTGTTTTGTGATGCTTCATGCTGATCAAGATGGAGAAAAACTGCAGGCACTGCT CCGCCTTGTAATAGAGCTGTTAGAAAGAGTCAGAATTGTTGAGGCTCTTAGTACAGTTCC TCAGATGTATTGCCTAGCTGTTGTTGAGGTTGTAAGAAGAAAAATGTTCATTAAACACTA CAGAGAG
	INTRON 7 - 8	6245345	6245424			80	GTAAGCAATTCTAATTATTTAATTA..........TTAACATAAATGTTCCTCTTCTAAG
8	EXON 8	6245425	6245506	0	1	82	TGGGCTGGTGCTTTAGTCAAAGACGGAAAACAACTATATGAAGCTGAAAAGTCAAAAAGG GAATCCTTTGGGAAATTATTTA
	INTRON 8 - 9	6245507	6245597			91	GTAAGTATTAATTTATTTACCCTTT..........CCGTGTTCCTGGTTTCTTTGTACAG
9	EXON 9	6245598	6245659	1	0	62	GGAAGTCCTTTTTAAGAAATCGTCTGTTTAAAGGACTGGACTCCTGGCCTTCCTCATTTT GT
	INTRON 9 - 10	6245660	6247705			2046	GTATGTATTTTTTTTTTTCTAACTA..........GATAAACTTTTTTTTCCATTTATAG
10	EXON 10	6247706	6247809	0	2	104	ACTCAGAAGCCTCGAAAATTTGACTGTGAACTTCCAGATATATCATTAAAAGATTTACAG TTTCTTCAATCATTTTGTCCTTCAGAAGTGCAGCCATTCCTCAG
	INTRON 10 - 11	6247810	6248065			256	GTAACAGCCACGAATACTTTTGAAT..........CTAAAAATCTGTCATTCTTTTTCAG
11	EXON 11	6248066	6248192	2	0	127	GGTCCCCTTACTTTGTGACTTTGAACCTCTACACCAGCATGTACTTGCCCTACATAATTT GGTAAAAGCAGCACAAAGTTTGGATGAAATGTCACAGACTATTACAGATCTCCTAAATGA ACAAAAG
	INTRON 11 - 12	6248193	6248275			83	GCAAATTAGTTGTTTTAAATATTTT..........TTAAGACTTTAACTCTGTGTTTCAG
12	EXON 12	6248276	6250167	0	2	1892	GTATCCACAAGTCAGGCATCCCCACAGTCAGCTGCTTCTCCAAGAATAGAAAGTACAACA GGCATTACAACCACTACCTCACCAAAAACTCCTCCTCCACTAACTGTTCAGGACACCTTA TGTCCGGCAGTGTGTCCCTTAGAAGAATTATCTCCAGATAGTATCGATGCTCATACATTT GATTTTGAAACCATCTCCCATCCAAACACAGAACAACCTGTTCACCAAGCTTCTATAGAC TTGGATTCATTAGCAGAAAGCCCTGAGTCTGACTTTATGTCTGCTGTGAATGAGTTTGTG ATAGAAGAAAATTTATCGTCTCCAAACCCTATAAGTGATCCACAAAGTCCAGAAATGATG GTGGAGTCACTTTACTCTTCAGTCATCAATGCAATAGATAGTAGGCGTATGCAAGACACA AGTACACGTGGAAACGAGGGCTTTGGGGATCGGGCTGCTCTACATGTCCAGCTGGAGAAA TGCAGAGCTGCTGCACAAGACTCTCACAGCAGTATACAAACCATCAAGGACGATCTGTGC CATTTCAGAACATTTGTACAAAAAGAACAGTGTGACTTAGCAAATTATTTAAAATGTACA GCTGTAGAAATAAGAAATATTATTGAAAAAGTAAAATGTTCTCTAGAAATAACACTAAAG GAAAAGCATCAGCAAGAACTCCAATCTTTAAAAATTGAGTATGAATGTAAACTTGATGCT CTAGCAAAAGACAGTGAAGAAAATGTAAATAAAATTTTAAAATTGAAAGAAAATTTAGTA TCCCTTGAAGAGGCTTTACAAAATAAAGACAATGAATTCACTTCGATTAAACATGAAAAG GATGCTATTGTCTGTGTGCAGCAAGAAAAGGATCAGAAGTTGTTAGAGATGGAAAAGATA ATGCATACTCAACATTGTGAAATTAAAGAACTGAAGCAGTCACGAGAGATGGCATTAGAA GACCTGAAAAAGCTGCATGATGAAAAAATCGAGTCATTGAGAGCTGAATTTCAGTGCTTA GAACAAAATCACCTGAAGGAATTAGAGGACACACTGCACATCAGGCACACACAGGAGTTT GAGAAAGTTATGACAGACCACAATATGTCTTTGGAGAAATTAAAAAAAGAAAATCAGCAA AGAATTGACCAGATGCTAGAATCTCATGCCTCAACTATTCAGGAAAAAGAGCAACAGCTG CAGGAGTTGAAACTCAAAGTTTCTGACTTGTCAGACATGAGATGTAAGTTAGAGGTTGAA CTTGCACTAAAGGAAGCAGAAACAGATGAGATAAAGATCTTGTTGGAAGAGAGCAGAACA CAGCAGAAGGAAATGCTGAAGTCTTTACTTGAACAAGAGACCGAAAACTTAAGAACAGAA ATAAGTAAACTAAACCAAAAAATTCATGATAATAATGAGAGTTACCGGGTGGGTTTGTCA GAGTTAAGAGCTTTAATGACAATTGAAAAAGATCAGTGCATTTCAGAGTTAATCAGTAGA CATGAAGAAGAATCTAATATACTTAAGGCTGAATTAGACAATGTTACATCTTTGCATCGC CAAGCATTTGAAATAGAAAAAAAACTGAAAGAACAAATAGTTGAATTGCAGACTAGATTG AACTCAGAATTGAGTGCTCTTGAAAAACAGAAAGATGAAAAAATAACCCAACAAGAAGAG AAGTATGAAGCACTTATCCAGAACCTTGAGAAAGACAAGGAGAGACTGGTCAAGAACCAC GAGCAAGACAAAGAACACTTAATTCAGGAGCTTAATTTTGAAAAAAACAAAGCTGTTCAA ACTGCAGTAGATGAATTTAAGGTGGAGAGAGAACTTGTTGAGAAAGAGTTATTAGAAAAA GTTAAACATCTTGAGAATCAAATAGCCAAAAC
	INTRON 12 - 13	6250168	6260929			10762	GTAAGTATTAAGTTTAGAATGTAAT..........TAAAAATGTCTTTTCAATTTTTAAG
13	EXON 13	6260930	6261095	2	0	166	TCCTGCCTTTGAGTCAGCCAGAGAAGATTCTTCAAGCTTAGTTGCGGAACTTCAAGAGAA ACTTCAAGAAGAAAAAGCTAAGTTTCTGGAACAACTTGAAGAACAAGAGAAAAGAAAGAA TGAGGAAATGCAAAATGTCAGAACCTCTTTGATTGCTGAGCAGCAG
	INTRON 13 - 14	6261096	6262833			1738	GTGTGTTTGAGATCTGAGGAAGCTT..........TTGACTATTACTACTGTTGTTTCAG
14	EXON 14	6262834	6262942	0	1	109	ACCAACTTTAACACAGTCTTAACAAGAGAGAAAATGAGGAAAGAAAACATAATAAATGAT CTTAGTGATAAGCTAAAAAGTACAATGCAGCAGCAAGAGCGGGATAAAG
	INTRON 14 - 15	6262943	6263023			81	GTTAGTGTTGTCTTAATATGATTTT..........TGTGTCTTTGCCTTTGGGGTCTTAG
15	EXON 15	6263024	6263264	1	2	241	ATTTGATAGAGTCGCTCTCTGAGGACCGAGCTCGTTTGCTTGAAGAGAAGAAGCAGCTTG AAGAGGAAGTGAGTAAACTCCGCACTAGCAGTTTTCTTTCCTCAGCACCTGTGGCTGCAG CCCCAGAGCTCTATGGTGCGTGTGCACCTGAGCTCCCAGGGGAGCCAGAGAGATCAGTCA TGGAGACGGCAGATGAAGGAAGACTGGATTCCACAATGGAGACAAGCATGATGTCTGTCC A
	INTRON 15 - 16	6263265	6264541			1277	GTAAGTAGGCTTATTTTCCATTCAG..........CAAACAACCATTCTTTCACTTTTAG
16	EXON 16	6264542	6264590	2	0	49	AGAAAACATGTTATCTGAAGAGAAGCAGAGGATCATGCTCCTAGAACGG
	INTRON 16 - 17	6264591	6265573			983	GTGAGCAGACTCTCTGTGAAGTACT..........TCACAGGTCTGTTTTTTCCTTGTAG
17	EXON 17	6265574	6265621	0	0	48	ACATTGCAGTTGAAAGAAGAAGAAAACAAGCGGTTAAATCAAAGACTG
	INTRON 17 - 18	6265622	6268697			3076	GTGAGTTCTTTTGGTTATATCTCTT..........GCATGATTCAACTTTTTTGTCTCAG
18	EXON 18	6268698	6268756	0	2	59	ATGTCTCAGAGTTTGTCCTCAGTCTCTTCAAGGCATTCTGAAAAAATAGCCATTAGAGA
	INTRON 18 - 19	6268757	6270690			1934	GTAAGTATCTCGTTTTTATTTTGTG..........AAGACAATAACCTACTTCTCCTTAG
19	EXON 19	6270691	6270827	2	1	137	TTTTCAGGTGGGAGATTTGGTTCTCATCATCCTAGATGAGCGGCACGACAATTATGTATT GTTTACTGTTAGTCCTACTTTATATTTTCTGCACTCAGAGTCTCTTCCTGCCCTGGATCT CAAACCAGGTGAGGGAG
	INTRON 19 - 20	6270828	6272700			1873	GTAAGTGCGCATACACTTGTAAGTA..........TGAAAATATATTACCAATTTATTAG
20	EXON 20	6272701	6272771	1	0	71	CTTCAGGTGCATCTAGAAGACCCTGGGTCCTTGGGAAAGTAATGGAAAAGGAATACTGTC AAGCCAAAAAG
	INTRON 20 - 21	6272772	6274197			1426	GTAAGAGTTAACCCTGTAATAGTAC..........TTCATGTGTTCTCTTTCCTTCTTAG
21	EXON 21	6274198	6275577	0	-	1380	GCACAAAACAGATTTAAAGTTCCTTTGGGGACAAAGTTTTACAGAGTGAAAGCTGTGTCA TGGAATAAGAAAGTATAGCCACAGAAGAAATCTCTACATCTCATACCATTTTTGATTTGT CCTCCAGTGCTGATAAACTACTCTAAAAACAGCTGGCCATTGTTGGGTTTTTTTTTGTTG TTTGTTTGTTTGTTTGTTTTTACAAAAGTCAACATAACAATATACTTCATTGGTGGACTG CACTTACCTTTTAAGTGGCTACATCTTAGGAACAATAAATTTATTAAAATTCTTGGCTGA ATCAAAATGGTTTTGTTTTGTTTCCACCCAAATAACTAGAAATTCGGACCAAAATAGATG TTTTCCAAGGGCAGAGCCTGCACTGTGGCTTGTGACTAGCCTCATTAGTTGCCTGTTAAT AAACATTAGCTGAATAGTTACCAGTGTTGTTACCAGCATTTGTCCTCTTGTGAATTCAAG AGTCCTCGCACTCTTTAACATGTTCTTTATAAAATGTATAAACCCTTCCAAACTATTTAA AGAGGAGTGTTATTGCATGCAGATAATCATAATTTTGAGTTTGCCTCAGAAGACTACTAA AGCAAATTTGTTCATTTTTTTTTAAAAAAATGCCCTTTAATGTTTCAAAAAAAAATAACA GTGTAATTTGACTGACTTTAAGATCAGCCATAAATAATGAGCAGTCTTCAAAAGCACTTT TCACACAGATCATCTGGGCTCCAGGGAGGAAGAGTCTGTGCCACTGATGTTTTCAAGTGC AGGACTCACTCAAACCTCTCAGCATCTTAGGACTGTTTCAAGTAATCATATTGATGAACT CGTAATTCATGGTTGACCTTCAGAAGAAGATATTCATTGTATATTAACATTTAGAGGTCA TTTAAATAACAAAAGTCTGTATTGTAAAGGACCTGTACAATTTTAAGACAATAAAGAATT GAAAGTGTAAATGTGTGTGCCTTTTAAAGGTTACATTTTAAATATATTGCGTGATTGCTG GGAAAGGTGAAAAAAATGTTCTGTATCAAAGAGAAACCTGTTTATTAAAAAATGTTGTTT GTATCCTATGTAACAGGGTGAAGTGGTGTTCTGTGGAACAGAACCATGTAAACTCAAGGT TTAAAAGCTGGCACTGAACAAAGATATTGAAGTAGCTAGGCTAGTTGATTGGAAAGAGTT TCTTCAGGGTTGTTGTTAGCAGTAATAAATGATTCTTTTTCAGAAATATTTAATTTCTCC ATAAAAATAAGTTGGATATTTTTATAAATATGTAATCTAATAGAATGAAAATGGAATAAA CATAGTGTATAGAATACCTAATTCAAAAACATATTAATGAATAAACGAACAAATGATTTC
	3' upstream sequence						ATGTTTCTATTCAGTCCTTCAATGACATCTTTATATATAGACTACAAGTGTAACATGACT TTATGTATTTTTAAAACAGTTGTATTTGTGATTGAGTCTGCTAGTGCAGTCTATTTCACT TAATTGGTGCTCTTCAGATTTAATATATGGTTTTATGCTGTGGAATTACTGTGTGTTCTG ACACACTAACTCTCTTTCGTTAACACTGAGTCTTGTGGTCGTTGATTGTCTTTGTTACCC AGTACTTTCATATTCATCTTACCAGTGTTCACACACATGTTCCAAGCAAGTGAGAACTAA AAAGATTTTGTTACAAAGAAAACAAAACAATTCCAGAAGCCTAAATTCATTGAGCTTTTG TTTTTACATAGTTAAAGGCAATATGAACTTTGCAGCTAGAATGAATACCTGACTTTCAGT CTCAGATGTGGCTTTTAGATAAAGTTCCACAAATGGACTCATTGTCTGATGTCTAAAACA GGGTACTGGAACCTATGTAATATAGTTTGCACTTTCAATGCAAAAATTTTTAGGTATGTG TTCAGTACTCAACATGTTAACTGTTGTAAAGGTTTATACGGTATAGTCTTGAGAGGGACA GAAATGTATAGGGGCCCCACAGAGTTCCAGCATCACAGGAGGCTGAGGCAGGAGCATTTG AGCAACAGAGAAAGACAACATCTGAAGAACAGGTGGGGAAAAACGGCTTTTACTGTGAAC TTTTAAAGAATGCTTATGTTACATATGTTTATTGTGACAGTGGTAATTTAATATAATAAA GACATTATATATGCCTGGCTCATGCCTATAAATGCAGCACTCAAGCATTTGAAGCAAGAG AAGAAGACCCTGTGTCTCAGAGAAAAATAAGTAAAAGTGATGTATAGAACTAAAATTAAT TTTTAGTTTTGAAAAAGTTCATAAGGTATAAAAGCAGTTTTTAAAAATTTTATTGTAGCC CCTAATGTTTCTTAGATTTTTCATGTCACACTAAATTATA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rb1cc1 (ENSMUSG00000025907)
Transcript ID	ENSMUST00000161327

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 1468 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information