MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Ubl5 (ENSMUSG00000084786)

Cross Reference

EMBL	AC164565
GO	GO:0000398, GO:0003674, GO:0005634, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Ubl5-008
OTTP	OTTMUSP00000037132
OTTT	OTTMUST00000072247
RefSeq_peptide	NP_001297675.1
UCSC	uc009ojc.1
UniParc	UPI000047AF6C
Uniprot/SPTREMBL	E0CZB3

Vega_transcript	OTTMUST00000072247, Ubl5-008
Vega_translation	204886, OTTMUSP00000037132

Definition

protein_id:ENSMUSP00000125540
translation:

MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDC
ILFLKFMKEAMVDVELQDPAVSRWKVVISPSKFLNTCPSDEIHDGMNLELYYQ

Chromosome

9

Length
Position(start - end)

1454
20645204 - 20646659

Orient to Chromosome

plus

Link

Location : (9:20645204-20646659)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Ubl5 (ENSMUSG00000084786)
Transcript ID	ENSMUST00000161882

Reports
substitution
cSNPs	1
Insertion	8
Deletion	3
SNPs	-1kb 20639946(c.-5258C>T), 20640029(c.-5175A>G), 20640128(c.-5076G>T), 20640286(c.-4918G>A), 20640417(c.-4787T>C), 20640857(c.-4347T>A), 20641002(c.-4202C>A), 20641158(c.-4046G>A), 20641259(c.-3945T>C), 20641436(c.-3768T>A), 20641585(c.-3619C>A), 20641626(c.-3578G>A), 20641737(c.-3467C>G), 20641954(c.-3250A>C), 20642427(c.-2777C>T), 20642434(c.-2770C>A), 20642608(c.-2596C>A), 20642628(c.-2576G>A), 20642649(c.-2555A>G), 20642682(c.-2522A>T), 20642714(c.-2490C>G), 20642715(c.-2489T>C), 20642747(c.-2457G>A), 20642780(c.-2424G>A), 20642864(c.-2340C>T), 20643062(c.-2142A>C), 20643065(c.-2139A>G), 20643381(c.-1823A>G), 20643524(c.-1680C>A), 20643967(c.-1237T>G), 20644339(c.-865C>T), 20644414(c.-790C>A), 20644696(c.-508T>C), 20644820(c.-384G>C), 5'UTR CDS 20646535(c.218A>G), 3'UTR INTRON 20644908(c.-12+15A>C), 20645031(c.-12+138A>G), 20645497(c.140+8A>C), 20645558(c.141-64A>G), 20645696(c.212+3A>T), 20645866(c.212+173G>A), 20646155(c.213-375A>T), 20646323(c.213-207C>G), 20646382(c.213-148G>C), 20646493(c.213-37T>C), +1kb 20647068(c.409T>C), 20647091(c.432T>C), 20647095(c.436A>G), 20647216(c.557T>C), 20647223(c.564A>G), 20647287(c.628T>C), 20647333(c.674C>T), 20647428(c.769T>A), 20647450(c.791G>A), 20647516(c.857A>G), 20647837(c.1178C>T), 20647913(c.1254A>G), 20648155(c.1496G>A), 20648271(c.1612G>T), 20648329(c.1670T>C), 20648380(c.1721G>A), 20648728(c.2069T>C), 20648796(c.2137G>A), 20648928(c.2269C>T), 20649003(c.2344A>G), 20649266(c.2607G>A), 20649312(c.2653C>A), 20649348(c.2689T>C), 20649466(c.2807G>A), 20649697(c.3038A>C), 20649725(c.3066C>A), 20649895(c.3236A>G), 20650093(c.3434C>T), 20650361(c.3702G>A), 20650597(c.3938T>C), 20650651(c.3992T>A), 20650728(c.4069G>T), 20650895(c.4236A>C), 20651105(c.4446C>T), 20651119(c.4460A>G), 20651247(c.4588T>G), 20651398(c.4739A>G), 20651559(c.4900G>A), 20651569(c.*4910C>A),
Insertions	-1kb 20640826 (c.-4378_-4377insA), 20641398 (c.-3806_-3805insGATAG), 20643310 (c.-1894_-1893insG), 20644752 (c.-452_-451insTCTT), 5'UTR CDS 3'UTR INTRON 20645287 (c.56+29dupC), +1kb 20649767 (c.3108_3109insTA), 20649788 (c.3129_3130insGA), 20650337 (c.3678_3679insTTTCC),
Deletions	-1kb 20641535 (c.-3668_-3665delAAAC), 5'UTR CDS 3'UTR INTRON +1kb 20649014 (c.2356_2360delTGGGG), 20650875 (c.4217_4218delAA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	1
synonymous substitutions
non-synonymous substitutions	20646535 (p.Asp73Gly),
B6 transcript (ENSMUST00000161882)	MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDC ILFLKFMKEAMVDVELQDPAVSRWKVVISPSKFLNTCPSDEIHDGMNLELYYQ*
MSMv4 transcript	MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDC ILFLKFMKEAMVGVELQDPAVSRWKVVISPSKFLNTCPSDEIHDGMNLELYYQ*
homology	99.12 (114 / 114)

Exon Detail Report

Gene Symbol (Gene ID)	Ubl5 (ENSMUSG00000084786)
Transcript ID	ENSMUST00000161882


..........AGAAGTTTTTTTTCGAGACGGAAACGAATCCGGTAAAGCCTGAGAAGTCT
TTTCAGGACGGAAACGAGGCATTGGGGAGACTGGAACATATCTAAGCACGAAAGACACAG
AACAGGACTTCATTCGAAACTGAAAGGTGTGACTGGGATGGGAGTGAGGGGCCAGCAGGA
CGGCCAAGCCAGGGAGGCGTGGCCACAGCCGCAATAGAAAGCAAGAATAATGCCTTTTGC
TGCCTACGCATAAGGATTAAATTTTGTATAAGTCGTATTAGGTAAGCACAAGGCGCTGGG
TAAGACTTTTCTTTTTCTTGAGTCAATATATGCTTACCTTGCTAAGAATCCTGTCTGCTA
AGAAGAAATCGCTCAATAGAGGCAAAACTGGTTGAATTTAAGAAGGGATTCCTCTCCCAC
CAGCTCTCGCGATTCTTTAATCTGGAACAAGATTAAAGAATCAAAGCAAAAGCTCTTTCC
CTGTATGCTATTTCCAACATCTTCGCAGGCAGGACACGGACACGCGGAGTGGTACGCAAC
ATGCATGGCCTCTCAAACAGGATCCGACTTAGTTTTCATCAACTGCAGCCTGCACCCCTG
GAGTCTCTGAAACGGTCACTACGACCAGGGGCGGGGAAGCAAGCACAGGGTTTGAGGCTG
AGCTTTGAATGAAAGCAGAAAGCCACAGGCCCTGCATGACTCCATTTCGGCACACCTGCA
GCCGGGATTCCGCGGTAGGAGGATTGTCTGGCTTGGGAGTAGTCGAGCACCCCGCCGCTG
AGATCCTTTAGGTTTCTTCCATGATGAAGGAATCTCCAACACCAGTTCCAACGTCCGCCG
TAAATCCATTCTTAGCAAGTCCCAGCTCATCCACACTGCGCAACAGAATCGCAAATCCTA
GCCCGGAACCCGGAAGCACCTAAGGGCCGGTGGTTCCGTTATATCACTTCCGCTTCCTGT
TTCCAGGCTTAACTCCGGCCGGGGTTCCTCGCTCGAGCTACGAGTTGTGT
CGTCGATAGGTTCGAGGATATTGGAG
GTGAGAAGGCTAAACTGAGAGGCCC..........TCATCCCTCCCTCCACCTGGTGTAG
CTCCAGCCACAATGATTGAGGTGGTTTGCAACGACCGTCTCGGAAAGAAAGTCCGCGTTAAGTGCAA
GTATCCACCGAGGGGTGACTGGCAG..........TTTACCTTAACTCCTTCGTGCCCAG
CACCGATGACACCATCGGCGACTTGAAGAAACTGATAGCTGCTCAAACTGGCACCCGCTGGAACAAGATCGTTCTTAAAAAGTG
GTAAGTACGTGCAGTATTAGGCTAG..........ATCAGCTTCTCTCTGAATCCCTTAG
GTACACGATTTTTAAGGACCACGTGTCTCTGGGAGATTGTATCCTTTTCCTGAAGTTCATGAAAGAAGCCAT
GTTTTTATTTATTTATTTATTTATT..........TCAGAGCGTCCATTCCTTTATCCAG
GGTGGGTGTTGAGCTACAGGATCCAGCTGTGAGCAGATGGAAGGTAGTCATCTCTCCGTCAAAGTTCCTTAACACGTGTCCTTCAGATGAAATCCACGATGGGATGAACCTGGAGCTTTATTACCAGTAGAGGGGGATTCCTTCTCCTCCTCGCCCTGCTCTGCCCTGCCCTCCTCTCCCATCCTCATCTGACACTGGTGTAGATGGTCATTTTTAACAGTTCACATGAATAAAAACTTG
GCTGCTGCTTTGCTGCTGTCATACTTGTGTGAGAGTTGTGTGTGAGGGCAGAGCTGCTGT
CTAGTAGTTAGGGGGTACTGCTACTTGAGGGGAAGATTGACTGGAAGCTGGGCCTGGTTG
GTGATGCACACCTGGCATCTCAACACTTGGAAAATTTTTTGTCTTGAAAGTCCTGTGTAG
ACCAGGTTATGAACTGGCTGTGTACCACAATGACCGTGACTCCTGCCTCCACTACAAGTG
CTGAGATTGAAAAGGTCTCAGTTTTGCTTTTAAGGAATTGCCAGGAGCTGTGGATGCCCC
ATGGATTTCATCTACCCTCCACAGTGTGGCCCAAGTTTGGAAATGGAAAGGAAGGCTGTC
TGTTACGTGTAGCCCTAGACAAATACTAGAGGATGGGTAATTTGTGAAGAATGGTTTGGT
TTTGGTTTTGGTTTTTTGAGACAGGGCTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCA
CTTTGTAGACCAGGCTGTCCTGGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCT
GGGATTAAAGGCGTGCACCACCATGCCCGGCGAAGAATGTTTTTTTGTTTTAGTGGAGAG
ATGGGCAGACTGCTTGCCCTACAAGCAGGAGGACCTGAGTTTGCTCCCTGAACCCACGAG
AAAATGCTGGATGTGCAGGTATACGCTTAACCTCACCACTGGACAGCTCTCTGGCCTCAC
TCGCTATAGTTATTCTGGCTTGTTTGGAAAGTAGTGAAGTACTAAAATTACTTTTACTGG
CTATTTTGTTACAGCAGTCAGAAATGTAACACAATGGGTGACATAGTGAGATCCAAACAG
GATTTATTAGAGCCCCTTCCAGGTTTTGGTCCAACTGTTCCAACAATGGCTGTCTCTCAG
TGGCAAGTCCAAGATTCAGTCCATAGGCTGGATACCAAAGTCTCTCATCTAATCTAGGAA
TTGTGTGAAGAAACCATCTCCTAGGCAATTCTCAGCCATT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Ubl5 (ENSMUSG00000084786)
Transcript ID	ENSMUST00000161882

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 114 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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