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Target CDS Information

Gene Symbol (Gene ID) Mdga1 (ENSMUSG00000043557)
Cross Reference
EMBL AC151294, AC154291
GO GO:0001764, GO:0003674, GO:0005615, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Mdga1-003
OTTP OTTMUSP00000049449
OTTT OTTMUST00000090216
UniParc UPI0001F7922F
Uniprot/SPTREMBL E9Q6S8
Vega_transcript Mdga1-003, OTTMUST00000090216
Vega_translation 219960, OTTMUSP00000049449
Definition protein_id:ENSMUSP00000130395
translation:
MVLDGEEPGRKTELKGGMQDNLQVWEDQSLVTVGWLDLDAQASSLHPGEDALRGRVIAYT
VQIVECNKTGSMGSPKSRPPFTHGSFAGARAGPVGPLRFAKCTSCSNAEEIFAAVKPCAL
RKAIALNRPLTAVPTAGFAENGTVTQGPISAFHLYLHFRDLWGIGDLGFTVLENPKDCSV
AELSGPGSWLLRPVRRGFKVWGSAPCVSTRAAALWEEDRAESRLAQTPSLGRRPLRRDSG
KRRERRGQSGAPADAPPAASQAAPPRGDEALAVKMEVTCLLLLALIPFHCRGQGVYAPAQ
AQIVHAGQACVVKEDNISERVYTIRESDTLVLQCLVTGHPRPQVRWTKTAGSASDKFQET
SVFNETLRIERIARTQGGRYYCKAENGVGVPAIKSIRVDVQYLDEPVLTVHQTVSDVRGN
FYQEKTVFLRCTVSSNPPARFIWKRGSDTLSHSQDNGVDIYEPLYTQGETKVLKLKNLRP
QDYASYTCQVSVRNVCGIPDKAITFQLTNTTAPPALKLSVNETLVVNPGENVTVQCLLTG
GDPLPQLHWSHGPGPLPLGALAQGGTLSIPSVQARDSGYYNCTATNNVGNPAKKTVNLLV
RSLKNATFQITPDMIKESENIQLGQDLKLSCHVDAVPQEKVNYQWFKNGKPARTSKRLLV
TRNDPELPAVTSSLELIDLHFSDYGTYLCMASFPGSPVPDLSIEVNISSETVPPTISVPK
GRAVVTVREGSPAELQCEVRGKPRPPVLWSRVDKEAALLPSGLALEETPDGKLRLESVSR
DMSGTYRCQTARYNGFNVRPREAQVQLTVHFPPEVEPSSQDVRQALGRPVLLRCSLLRGS
PQRIASAVWRFKGQLLPPPPVLPAAAVETPDHAELRLDALTRDSSGNYECSVSNDVGSAT
CLFQVS

Chromosome 17
Length
Position(start - end)
127967
29842119 - 29970087
Orient to Chromosome minus
Link Location : (17:29842119-29970087)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mdga1 (ENSMUSG00000043557)
Transcript ID ENSMUST00000167190
Reports
substitution
cSNPs16
Insertion76
Deletion97
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num11
non-synonymous num5
synonymous substitutions 29843008 (p.Ala756Ala), 29846373 (p.Pro694Pro), 29846619 (p.Pro612Pro), 29849767 (p.Glu469Glu), 29852455 (p.Arg397Arg), 29852473 (p.Pro391Pro), 29852563 (p.Ser361Ser), 29852566 (p.Thr360Thr), 29910363 (p.Ala139Ala), 29910372 (p.Ala136Ala), 29931328 (p.Thr103Thr),
non-synonymous substitutions 29910323 (p.His153Asn), 29910328 (p.Ala151Val), 29910368 (p.Phe138Leu), 29940834 (p.Phe81Cys), 29940844 (p.Arg78Trp),
B6 transcript
(ENSMUST00000167190)
MVLDGEEPGRKTELKGGMQDNLQVWEDQSLVTVGWLDLDAQASSLHPGEDALRGRVIAYT
VQIVECNKTGSMGSPKSRPPFTHGSFAGARAGPVGPLRFAKCTSCSNAEEIFAAVKPCAL
RKAIALNRPLTAVPTAGFAENGTVTQGPISAFHLYLHFRDLWGIGDLGFTVLENPKDCSV
AELSGPGSWLLRPVRRGFKVWGSAPCVSTRAAALWEEDRAESRLAQTPSLGRRPLRRDSG
KRRERRGQSGAPADAPPAASQAAPPRGDEALAVKMEVTCLLLLALIPFHCRGQGVYAPAQ
AQIVHAGQACVVKEDNISERVYTIRESDTLVLQCLVTGHPRPQVRWTKTAGSASDKFQET
SVFNETLRIERIARTQGGRYYCKAENGVGVPAIKSIRVDVQYLDEPVLTVHQTVSDVRGN
FYQEKTVFLRCTVSSNPPARFIWKRGSDTLSHSQDNGVDIYEPLYTQGETKVLKLKNLRP
QDYASYTCQVSVRNVCGIPDKAITFQLTNTTAPPALKLSVNETLVVNPGENVTVQCLLTG
GDPLPQLHWSHGPGPLPLGALAQGGTLSIPSVQARDSGYYNCTATNNVGNPAKKTVNLLV
RSLKNATFQITPDMIKESENIQLGQDLKLSCHVDAVPQEKVNYQWFKNGKPARTSKRLLV
TRNDPELPAVTSSLELIDLHFSDYGTYLCMASFPGSPVPDLSIEVNISSETVPPTISVPK
GRAVVTVREGSPAELQCEVRGKPRPPVLWSRVDKEAALLPSGLALEETPDGKLRLESVSR
DMSGTYRCQTARYNGFNVRPREAQVQLTVHFPPEVEPSSQDVRQALGRPVLLRCSLLRGS
PQRIASAVWRFKGQLLPPPPVLPAAAVETPDHAELRLDALTRDSSGNYECSVSNDVGSAT
CLFQVS
MSMv4 transcript
MVLDGEEPGRKTELKGGMQDNLQVWEDQSLVTVGWLDLDAQASSLHPGEDALRGRVIAYT
VQIVECNKTGSMGSPKSWPPCTHGSFAGARAGPVGPLRFAKCTSCSNAEEIFAAVKPCAL
RKAIALNRPLTAVPTAGLAENGTVTQGPISVFNLYLHFRDLWGIGDLGFTVLENPKDCSV
AELSGPGSWLLRPVRRGFKVWGSAPCVSTRAAALWEEDRAESRLAQTPSLGRRPLRRDSG
KRRERRGQSGAPADAPPAASQAAPPRGDEALAVKMEVTCLLLLALIPFHCRGQGVYAPAQ
AQIVHAGQACVVKEDNISERVYTIRESDTLVLQCLVTGHPRPQVRWTKTAGSASDKFQET
SVFNETLRIERIARTQGGRYYCKAENGVGVPAIKSIRVDVQYLDEPVLTVHQTVSDVRGN
FYQEKTVFLRCTVSSNPPARFIWKRGSDTLSHSQDNGVDIYEPLYTQGETKVLKLKNLRP
QDYASYTCQVSVRNVCGIPDKAITFQLTNTTAPPALKLSVNETLVVNPGENVTVQCLLTG
GDPLPQLHWSHGPGPLPLGALAQGGTLSIPSVQARDSGYYNCTATNNVGNPAKKTVNLLV
RSLKNATFQITPDMIKESENIQLGQDLKLSCHVDAVPQEKVNYQWFKNGKPARTSKRLLV
TRNDPELPAVTSSLELIDLHFSDYGTYLCMASFPGSPVPDLSIEVNISSETVPPTISVPK
GRAVVTVREGSPAELQCEVRGKPRPPVLWSRVDKEAALLPSGLALEETPDGKLRLESVSR
DMSGTYRCQTARYNGFNVRPREAQVQLTVHFPPEVEPSSQDVRQALGRPVLLRCSLLRGS
PQRIASAVWRFKGQLLPPPPVLPAAAVETPDHAELRLDALTRDSSGNYECSVSNDVGSAT
CLFQVS
homology99.45 (906 / 906)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mdga1 (ENSMUSG00000043557)
Transcript ID ENSMUST00000167190
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCAAAGGCGTACACCCGAGTTAGAGCCCAGTATAGTGCCTGACAGATTGC
AGAGCTAAAGTCAGTGTGAAATACTTTCTTCCCTGTTTAGGATGTGGGGTGGTAACCTGG
TCTTGGTCCCTGTGACATCTCCTCTTAGGCTGGGGAACAGTACTCCTTGCATCCAATTTA
AGGATAGGAGCCATATGTTTAGTGACAAATTCTGTCTCAAAATGTACCTGTCTGTGACTA
TCTTAACTCAGAGAGTGGCTCTCCATGCCCTTTAATCAGATTTCAGGGGGCAGATGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGAGTGTGTGTA
TGTGTTAGTGTGTGTATGTGAGTGTGTGTATGTGTTAGTGTGTGTATGTGAATGTGTGTA
TGTATGTGTATGTCTATGTATGTATGTGTGTATGTGTATATGTGTGTGAGTCTGTGTATG
TCTGTGTATGTGTGTGTATGTGTGTGAGTGTGTGTGTATGTGTGTATGCGTGTATGTGTG
TGAATGTGTATGTGTGTGTGAGTGTGTATGTGTGTATGAGTGAGTGTGTATGTGTGTGAG
TGTGTTGTGAGTGTGTGTGCACGTGCATGTGAGTTCTGCACACTACCGGAAGTGTCCACT
TGTCCTCCCTAAGCCACCGCCATCAGCTCAGTCTGGTCAAAGGTTGCCTTCACTCCATTA
GCCTCCAGGAATCAAAAGAATGATTTCCTCAGTCAAGAATAATTATTTCAACCAGCTTTT
TGCCTTTGCTCACTGCTGCACTGGCTGCGCCACGTGTGCCAGCTGACAAATTAATTTCTA
TTATTTATATTGGGCTAGCCCAGGGAATGGGGGGTGGAGAGTGGGGAGGGGGAGGAGAGA
GGCAGCTGGAGAAGTGATGGGAAATGGAGATGAAGAAATAGCAATGAGGGAAATGGAGAG
AGGAAAGTGCAGGGGGAGAGGATCATAAACACAAACAGAAGAAACCCAAA
1 EXON 1 29969932 29970087 - 0 156
ATGGTTCTGGACGGAGAGGAGCCAGGGAGGAAGACAGAGCTAAAGGGAGGGATGCAGGAT
AATCTCCAGGTGTGGGAGGACCAAAGCCTGGTAACTGTAGGGTGGCTGGACCTGGATGCC
CAGGCCAGCAGTTTGCATCCCGGTGAAGATGCTCTG
INTRON 1 - 2 29940920 29969931 29012
GTGAGCCGGCCTCTGGGTCTTCTGC..........TTATTTATCACATTTGTCCCTCTAG
2 EXON 2 29940811 29940919 0 1 109
AGAGGCAGGGTCATCGCTTACACTGTCCAGATCGTGGAATGTAATAAAACCGGTTCTATG
GGAAGCCCCAAGTCCTGGCCTCCCTGCACCCATGGTTCCTTTGCTGGGG
INTRON 2 - 3 29931372 29940810 9439
GTAGGGCAAGGCCCCACAGCAATGG..........TGCGCCCGCCCGCCTACTTTACCAG
3 EXON 3 29931235 29931371 1 0 137
CGAGAGCAGGGCCTGTAGGCCCGCTGCGCTTTGCCAAATGCACGTCTTGTAGCAACGCCG
AGGAAATATTTGCTGCAGTGAAACCGTGTGCCCTGCGGAAAGCAATCGCCCTAAATCGCC
CCCTGACAGCCGTCCCG
INTRON 3 - 4 29910378 29931234 20857
GTTCTTTGCTGCTACACAGATCTGC..........GGCTGATACCCCTGTTCCAATCTAG
4 EXON 4 29910252 29910377 0 0 126
ACTGCTGGGCTCGCCGAAAATGGCACTGTTACTCAAGGACCTATTTCAGTGTTTAACCTT
TACCTTCATTTCCGTGACCTCTGGGGCATCGGTGATCTTGGTTTCACTGTCCTGGAGAAC
CCCAAG
INTRON 4 - 5 29887808 29910251 22444
GTCAAGTTTCAGTCTAGACCTGAGA..........TCGGTGGACAGCCCTGGGGACCTAG
5 EXON 5 29887447 29887807 0 1 361
GACTGCTCGGTGGCCGAGCTTTCTGGGCCAGGGAGCTGGCTGCTGCGCCCGGTGCGCAGA
GGCTTCAAGGTCTGGGGCAGCGCCCCCTGCGTCTCCACCCGGGCAGCCGCCCTGTGGGAA
GAGGACAGAGCCGAGTCGCGGCTTGCTCAGACTCCTAGTCTCGGTCGCCGCCCTCTCCGT
CGCGACTCAGGGAAAAGGAGGGAACGCAGAGGGCAAAGCGGTGCCCCGGCGGATGCGCCC
CCCGCCGCCTCTCAGGCTGCGCCGCCTCGCGGGGATGAAGCACTGGCCGTGAAGATGGAG
GTGACCTGTCTTCTACTTCTGGCGCTTATCCCCTTCCACTGTCGGGGACAAGGAGTCTAT
G
INTRON 5 - 6 29857730 29887446 29717
GTAAGAGCCAGCGTCCCGCTCTACC..........CTCTCCTCCTCTGTCCTCTCTGAAG
6 EXON 6 29857590 29857729 1 0 140
CTCCAGCCCAGGCCCAGATTGTGCATGCGGGGCAGGCCTGTGTGGTGAAGGAGGATAACA
TCAGCGAGCGGGTCTACACCATCCGGGAGAGCGACACCCTGGTGCTGCAGTGCCTGGTCA
CGGGACACCCTCGGCCCCAG
INTRON 6 - 7 29852617 29857589 4973
GTAAGATGGACCCTGGCCTTGCTAG..........CTCAGTGTGGTGACTGCCCATCCAG
7 EXON 7 29852442 29852616 0 1 175
GTGCGGTGGACCAAAACTGCCGGCAGCGCATCGGACAAGTTCCAGGAGACATCAGTCTTC
AATGAGACTCTGCGGATCGAGCGCATCGCACGCACGCAGGGAGGTCGCTACTACTGCAAG
GCGGAGAACGGAGTGGGCGTGCCAGCCATCAAGTCTATCCGTGTGGACGTGCAGT
INTRON 7 - 8 29850689 29852441 1753
GTGAGTTAAGGTCTCTCGAGGCTCT..........TGACTTAGGGCTGGTGTCCTTGCAG
8 EXON 8 29850492 29850688 1 0 197
ACTTGGATGAGCCTGTGCTAACGGTGCATCAGACAGTGAGCGATGTCCGAGGCAACTTCT
ACCAGGAGAAGACCGTGTTTCTACGCTGTACCGTCAGCTCCAACCCGCCCGCCCGCTTTA
TCTGGAAGCGGGGCTCCGACACCCTGTCCCACAGCCAGGATAATGGGGTTGACATCTACG
AGCCTCTCTATACTCAG
INTRON 8 - 9 29849773 29850491 719
GTCAGGCTGGGCCGCTGGCTCCACC..........ACTCCAGTGATCCACCGCCACCCAG
9 EXON 9 29849640 29849772 0 1 133
GGGGAAACGAAGGTCCTGAAGCTGAAGAACCTGCGGCCCCAAGACTATGCCAGCTACACC
TGCCAGGTGTCCGTGCGCAATGTGTGCGGCATCCCAGACAAGGCTATCACCTTCCAGCTC
ACCAACACCACGG
INTRON 9 - 10 29849427 29849639 213
GTACAGGCGCTTCCCCATCCACGCC..........GACCCCCACCGCCTTGTCCCCTTAG
10 EXON 10 29849157 29849426 1 1 270
CACCTCCAGCCTTGAAGCTGTCTGTGAACGAAACTCTGGTGGTGAACCCTGGGGAGAACG
TGACAGTGCAGTGTCTGCTGACGGGCGGCGATCCCCTCCCCCAGCTGCACTGGTCCCACG
GACCTGGCCCACTGCCCCTGGGTGCTCTGGCTCAGGGTGGTACCCTCAGCATCCCTTCAG
TGCAGGCCCGGGATTCTGGCTACTACAACTGCACAGCCACCAACAATGTAGGCAACCCAG
CTAAGAAGACCGTCAACCTGCTGGTGCGAT
INTRON 10 - 11 29846651 29849156 2506
GTACGTGATCTGGAGGGGTAGGCGG..........TTCTTCGAACCTCATCTCCTTGCAG
11 EXON 11 29846321 29846650 1 1 330
CCCTGAAGAACGCCACATTCCAGATCACCCCTGACATGATCAAAGAAAGCGAGAACATTC
AACTCGGTCAGGACCTGAAGCTGTCATGCCATGTGGATGCGGTGCCCCAGGAGAAGGTGA
ACTATCAGTGGTTTAAAAACGGCAAGCCGGCACGCACATCCAAGCGGCTGCTGGTGACCC
GAAATGACCCCGAGTTGCCCGCTGTCACCAGCAGCCTGGAGCTCATTGACCTGCACTTCA
GTGACTACGGCACTTATCTGTGCATGGCTTCCTTCCCGGGGTCACCAGTGCCTGACCTCA
GCATAGAGGTCAACATTTCCTCAGAGACAG
INTRON 11 - 12 29843142 29846320 3179
GTGGGAGCATCGGGAACTGTGGGGA..........TCCACCCCTCTCCACCCTCCTCCAG
12 EXON 12 29842845 29843141 1 1 297
TACCACCCACCATCAGTGTGCCCAAGGGCCGAGCAGTGGTGACAGTGAGGGAGGGCTCTC
CTGCTGAGCTCCAGTGCGAAGTTCGTGGCAAGCCCCGGCCTCCAGTGCTATGGTCTCGGG
TGGACAAGGAGGCTGCCCTTCTGCCCTCGGGGCTGGCCCTGGAGGAGACTCCGGATGGGA
AGCTGCGGCTGGAGAGTGTGAGCCGCGACATGAGCGGCACCTACCGCTGCCAGACAGCTC
GCTACAATGGCTTCAACGTACGACCCCGGGAGGCTCAGGTGCAGCTGACAGTGCACT
INTRON 12 - 13 29842407 29842844 438
GTGAGTCCCCTCCCCAGACATTCAA..........TACTGACGGTAGTCCCGGTCCCCAG
13 EXON 13 29842119 29842406 1 - 288
TTCCTCCAGAGGTGGAGCCCAGTTCCCAGGACGTGCGCCAGGCGCTGGGCCGGCCTGTGC
TCCTGCGCTGCTCGCTTCTGCGTGGCAGTCCTCAGCGCATCGCCTCGGCCGTGTGGCGCT
TCAAAGGACAGCTGCTGCCCCCACCGCCTGTTCTCCCCGCCGCTGCTGTGGAGACCCCCG
ATCACGCCGAGCTGCGCCTGGACGCCCTGACCCGTGACAGCAGCGGCAACTACGAGTGCA
GCGTCTCCAACGACGTGGGCTCAGCCACCTGCCTCTTCCAGGTCTCCG
3' upstream sequence
GTGAGCGTCCGGTCAGCTCCACCCCCGCCTGCTCGCCCATACCCTCCTGGGACCAGGCTC
CGTCATCCACCCCAACCTCTCCCCGTACCCCTCCCCCTGCCTGGGCTGCTCTTTCCTTCT
AGCTCCTGCAGTCTTTAGGCATTTGTCTTTTCTAAGACTTTTGTCCTCCTCTTGAAGGCC
CGCCCCCTTAAGACCACGCCCTTCTACCCCAGTTCCTGGTTTCTCCCTACCATTGACTGT
TCAGTTCCTTTCTTTGGCCTCTTACGGCCACGCCCCCTTTCAAATGCACCAGGGTAGGTT
TGGCCGGCTCTGTGCGTCTGTCCCTTCAGCCCCTCCCACAATCAAAATCTGGGCCCAGTC
CCATCTCAGCCAGAACTCAAAGTCTTTCCTCCATGGTCCTTGGCCTCAGAGGGTGCGAAT
GGGTAAAACCATTGGGTACCCAGCTTGTAGCTTGGAGGGAAGAAGATGCCCCTGAACAGC
TGATTGAGGCTGGACTAGGCAGAACATAATCTCCTCCTCACTCATCCCTCCACCCCCAAC
CTTTCCCCAGTTGCCACCCTAGAGGTAGCAGTGCACCCGCAGGGACCTGACTCCCTGATG
CCTGAAACCCCCGGCTTTCACAATAGCCCCCAAAAAGCACGGGGTGAATCCTTCAATTCT
TGCATTCCTCCACCTCCTCAATAGCAGGAGAGAAGGCTGCAGGTCACTGGCCCCCTTCCA
GGCCTCTCCCCATCCACTCAGCTTTGCCAGCCAGAGGCCCCTGTGACATTTCCCACCTCC
CCCATCCTCCCTCCCTGTTCCCCCATTTTTCCTATCTCCCAACCTTTTGACCTCCACCTA
TCATTTCTTTCTTCCCTCTCTATATGCCCGGCCCTCGTCTTTACCAATCTTTCTGTTTTC
TTCCTTGGCCTTTCCTCTTTCTATCCTCACCAACATCCCCCCTTTTGGGACTTACAATCT
GCCCCCTCCATCTCCGCCCCCTCCCCCACCCCCACCCACC..........

Sequence Detail Report

Gene Symbol (Gene ID) Mdga1 (ENSMUSG00000043557)
Transcript ID ENSMUST00000167190
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 906 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information