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Target CDS Information

Gene Symbol (Gene ID) Tead1 (ENSMUSG00000055320)
Cross Reference
EMBL AC104930, AC126052, AC155930
GO GO:0003143, GO:0003677, GO:0003700, ...show all
goslim_goa GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name Tead1-005
OTTP OTTMUSP00000051210
OTTT OTTMUST00000092584
RefSeq_peptide_predicted XP_006507628.1
UCSC uc012fsh.1
UniParc UPI0001F78CCF
Uniprot/SPTREMBL E9Q387
Vega_transcript OTTMUST00000092584, Tead1-005
Vega_translation 202273, OTTMUSP00000051210
Definition protein_id:ENSMUSP00000129798
translation:
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
YIKLRTGKTRTRKQDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGGPGF
WPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPTSAPAPSVPAWQGRSIGTTKL
RLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKEL
FGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVSSQYESSENMTVTCSTKVCSFGKQVVEK
VETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDT
QETLLCMACVFEVSNSEHGAQHHIYRLVKD

Chromosome 7
Length
Position(start - end)
139176
112759483 - 112898660
Orient to Chromosome plus
Link Location : (7:112759483-112898660)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tead1 (ENSMUSG00000055320)
Transcript ID ENSMUST00000170352
Reports
substitution
cSNPs3
Insertion78
Deletion123
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 112759536 (p.Gly18Gly), 112759590 (p.Pro36Pro), 112759593 (p.Pro37Pro),
non-synonymous substitutions
B6 transcript
(ENSMUST00000170352)
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
YIKLRTGKTRTRKQDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGGPGF
WPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPTSAPAPSVPAWQGRSIGTTKL
RLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKEL
FGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVSSQYESSENMTVTCSTKVCSFGKQVVEK
VETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDT
QETLLCMACVFEVSNSEHGAQHHIYRLVKD*
MSMv4 transcript
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
YIKLRTGKTRTRKQDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGGPGF
WPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPTSAPAPSVPAWQGRSIGTTKL
RLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKEL
FGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVSSQYESSENMTVTCSTKVCSFGKQVVEK
VETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDT
QETLLCMACVFEVSNSEHGAQHHIYRLVKD*
homology100.00 (391 / 391)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tead1 (ENSMUSG00000055320)
Transcript ID ENSMUST00000170352
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTAGTTTTCACAAAGCAATATTGATATGTTAGTGTGCAGCCAGCAGGGAG
TACTGGATTTGATCATTTTCAGGTTGGTGTCAAGCCATTTGTTTAGAAAGCTTATCCCCT
TGTGACTATAGGGGCTGTGTACAATTGAAGGGGAATGCATCTACATCTTGGAGAAAGATT
TCTTGTGTTTCTGTTATCTTCATTGCCCTAAAACTTAAGGAAATATTGCACCACAGTTTC
CATGTAATCAGGAATTCAGAGTATGCTACAGGGCCGGCTGTTGCCCCATGGGGATGGGAC
ATTCCCACAAGAATGGCAGGTATAGGAGGGGACAAGACTGGTCTCTGTTTCATACAGGGT
TAGTGTTTAGGACCCAGTGACCTGTCTCCACAGGGTACCATCCTCAAAGATCAATGCCTA
CATCTAGGTCAGCTGGCATCGTACCTCAGTAGGACAAGGTCTGCAGCACTAGAGAGCCCT
CATCTCTTCTGTCTCCCACTCCTGCGTCTTGATGGCCTTTGTTGAGATGGCTTAGCATTT
CACTTAAGTTGTCAATTTCTAGAGTGAGTTTGACATTTTTTATTTTCTTATAAACTTGTT
CTGCTATGGGGACTTGGCTACCCATGAGCGCAGACTTTTTTTTGTAAGGTGTGGGCACTT
AACAATAGGTTTTCACATGATGGGTAGTTAGTTCTGAGTGAGTGCCATCATTGGTGAGAA
TTTTCTCTTATCCAGGAAGATGACCCAGCTTCAGTCGGCCATTAATGTTTTTGTAGGGTA
CTTAACATGACACAAGGAGGACAAAATCATCTTGGGATCTCAGAATTCCATATTCTCCTC
CAGGAATTATTGTCCATGTAACACTGTTGATGACCTGTGAGCTTACTATGCAGCTTGTAG
GAGCAGTATATTGATGGCACCCCCAGCCTTACATGGTTTTGTGATTTCTCTTTTAGGTTT
GTTTTCTTGAAAAGGCTCCAGGCTTCGGCTTGGAAAACCCAACCGCCAAA
1 EXON 1 112759438 112759639 - 1 202
ATTGAGCCCAGCAGCTGGAGCGGCAGCGAGAGCCCTGCCGAAAACATGGAAAGGATGAGC
GACTCGGCAGATAAGCCGATTGACAACGACGCGGAGGGTGTCTGGAGTCCTGATATTGAG
CAGAGTTTCCAGGAGGCCCTGGCTATCTATCCACCTTGTGGGAGGAGAAAAATCATCTTA
TCAGACGAAGGCAAAATGTATG
INTRON 1 - 2 112759640 112839415 79776
GTAAGTGGCCTGGAACATTCCTTTC..........ATTGTAAATTCTTTTTTTCTTGCAG
2 EXON 2 112839416 112839480 1 0 65
GTAGAAATGAATTGATAGCCAGATACATCAAACTCAGGACGGGAAAGACAAGGACCAGGA
AGCAG
INTRON 2 - 3 112839481 112856797 17317
GTACAGTACCCCCCTGCAAGGTTTG..........TCAGTGTGTCACTGTCATCTTCAAG
3 EXON 3 112856798 112856932 0 0 135
GATCAGACTGCCAAGGACAAGGCCCTGCAGCACATGGCTGCCATGTCATCAGCCCAGATC
GTCTCGGCTACTGCCATCCACAACAAGCTGGGGCTGCCTGGGATTCCACGCCCCACCTTC
CCGGGGGGTCCGGGG
INTRON 3 - 4 112856933 112858153 1221
GTAAGTTAATACTGGAACCACAGCA..........GAAGCCTTTGCTTCTTGCCTTCCAG
4 EXON 4 112858154 112858200 0 2 47
TTCTGGCCTGGGATGATACAGACAGGACAGCCAGGATCCTCACAAGA
INTRON 4 - 5 112858201 112859068 868
GTAAGTCTTTGAAGGCCCCAGACAG..........TGACATGTCAACCATTTTTCCCCAG
5 EXON 5 112859069 112859130 2 1 62
CGTCAAGCCCTTTGTGCAGCAGGCCTACCCCATCCAGCCAGCAGTCACAGCCCCCATTCC
AG
INTRON 5 - 6 112859131 112861431 2301
GTGAGTCTCCCTGCTTCTTGGATGA..........GTCAAGGTGACAATTGTTATTTCAG
6 EXON 6 112861432 112861556 1 0 125
GGTTTGAGCCTACGTCAGCCCCAGCCCCCTCAGTTCCTGCCTGGCAGGGCCGATCCATTG
GCACAACCAAGCTTCGCCTGGTGGAATTCTCCGCTTTCCTTGAACAGCAGAGAGACCCAG
ACTCG
INTRON 6 - 7 112861557 112876074 14518
GTGAGTATGCGCAGAGGGGTGTGGC..........GAATATCTCCGATGGTTTCTTGCAG
7 EXON 7 112876075 112876248 0 0 174
TACAACAAACACCTCTTCGTGCACATCGGGCATGCCAACCATTCTTACAGTGACCCGTTG
CTCGAATCTGTGGACATTCGTCAGATATATGACAAATTTCCTGAAAAGAAAGGTGGCTTG
AAGGAGCTGTTTGGAAAGGGCCCTCAAAACGCCTTCTTCCTCGTCAAATTCTGG
INTRON 7 - 8 112876249 112891718 15470
GTGAGTAGACCACGCTTCCCTGCTT..........ACCTGCCCCTGCTTCCTTCCTACAG
8 EXON 8 112891719 112891859 0 0 141
GCGGACTTAAACTGCAATATCCAAGACGACGCCGGGGCCTTTTATGGTGTGAGCAGTCAG
TATGAGAGTTCTGAGAACATGACAGTTACCTGTTCCACCAAAGTGTGCTCCTTTGGGAAA
CAAGTAGTAGAAAAAGTAGAG
INTRON 8 - 9 112891860 112894311 2452
GTAAGTTGGCCTAGTTGAGAAAGTC..........TACTCAACCCTCTTTCTCCTCACAG
9 EXON 9 112894312 112894464 0 0 153
ACGGAGTATGCGAGGTTCGAGAATGGTCGATTCGTGTACCGAATAAACCGCTCGCCAATG
TGTGAATATATGATCAACTTCATCCACAAGCTCAAACACCTACCAGAGAAATATATGATG
AACAGTGTTTTGGAAAACTTCACCATATTATTG
INTRON 9 - 10 112894465 112898546 4082
GTAATGTTTGTCTCTCTCTGGTTGG..........TACACCTTTTTTTTTTTTTAAACAG
10 EXON 10 112898547 112898660 0 - 114
GTGGTAACAAACAGGGATACACAAGAAACTCTGCTCTGCATGGCCTGTGTATTTGAAGTC
TCGAATAGCGAACACGGAGCACAGCACCATATCTACAGGCTTGTGAAGGACTGA
3' upstream sequence
ACCTGGTTATTTATATAGAGAGATATCTGTATATACACACACATATGTGCACACACACAC
TCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCCCC
AGGTCCCACCCTGACCTTTCTAATCCTGTTCGAGTGAACTTATTTTTTTTTTCCATGTGT
TCATGCTATCATTGTAGCTGTGAAGTTGTGATGCAGTTTTTTGTGTATTCCTCAGATCTG
CAACCCACAATTCCTTGGGGAAGGTGAATCTTACCAGCCTAAGCTAAGCCTCTCTGCAGC
CCTGTTTCCTGTTGTGGTAGAAAATACTGAGACAGAGGATTGGCCACGGGGCATTGACTG
CCTTTATACAAATGTATTTAGTTCTTTTTGTGTTTTTCCAACATAAAATTCTTGTTTTAA
GATACAAGTAAAATTAATCTTTAAATGTAAATGTAAATTAGTACAGGAAAACTAAGATTC
TTTAGACTTATCTTTGTAACTAATTAGGATGGAAGTTATGGAAGAATGTAATTCACTAAA
TTATTTTTTAAATGAAATCTTTCTTTCTTTTTAAAACCAAATGTTAAACTATAGCCTTAA
GACATGCTTGGTTGAACTATCCTAATGAGACAAATTTATACCTTCCCCCAGCCCCCAAGG
TTAAAACTAATACCCTAATTCATTAAACTCTTGAAACAGGTGTCACAAAGGAGGAAGACA
TCACCCCTCACCCTTAACATATATAGTATATTTAAAAATGTAAAATTGTATTGTACTAAT
GTGATAATTCATTATTTAATGAAAAAGAAAAGATGGCTCTTTTTGCAATAAGTAGGTAAT
ACTGAGACAAGTCTAAGCTTACAACGTTATAGTCTTGTGTGTGCAGTTACATTTTATATG
GTCAACCAAATTTTTTACAGAGACGAGTTCACGTTTGAACCACTGAAATTTAATAGCAAA
TTTAAAAATTGGCATGAATACTGCACTGTTGAGTTGCAAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Tead1 (ENSMUSG00000055320)
Transcript ID ENSMUST00000170352
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 391 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information