MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Shmt1 (ENSMUSG00000020534)

Cross Reference

GO	GO:0004372, GO:0005634, GO:0005654, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Shmt1-010
OTTP	OTTMUSP00000053871
OTTT	OTTMUST00000096422
UCSC	uc007jgo.1
UniParc	UPI00021CF4E4
Uniprot/SPTREMBL	G3UYY1
Vega_transcript	OTTMUST00000096422, Shmt1-010
Vega_translation	210004, OTTMUSP00000053871

Definition

codon_start:2
protein_id:ENSMUSP00000134269
translation:

XADRDATLWASHEKMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALG
SCLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFA
VYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQL
EENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFE
HCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHN
HAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSK
GTDGGRAEKVLEACSIACNKNTCPGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVA
TLREEVENFASNFSLPGLPDF

Chromosome

Length
Position(start - end)

17876
60789144 - 60807021

Orient to Chromosome

minus

Link

Location : (11:60789144-60807021)
/

Detail Map

name	Smcr8 (ENSMUSG00000049323)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Smcr8 note : Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) [Source:MGI Symbol;Acc:MGI:2444720]

name	Shmt1 (ENSMUSG00000020534)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Shmt1 note : serine hydroxymethyltransferase 1 (soluble) [Source:MGI Symbol;Acc:MGI:98299]

name	Gm24945 (ENSMUSG00000088956)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm24945 note : predicted gene, 24945 [Source:MGI Symbol;Acc:MGI:5454722]

name	Smcr8 (ENSMUSG00000049323)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000056907

name	Shmt1 (ENSMUSG00000020534)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000018744

name	Shmt1 (ENSMUSG00000020534)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000174719

name	Shmt1 (ENSMUSG00000020534)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000174174

name	Shmt1 (ENSMUSG00000020534)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000174214

name	Shmt1 (ENSMUSG00000020534) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS24799.1 Uniprot/SWISSPROT:P50431 RefSeq_peptide:NP_033197 RefSeq_mRNA:NM_009171.2 RefSeq_mRNA_predicted:XM_006532644 RefSeq_peptide_predicted:XP_006532707.1 Vega_transcript:OTTMUST00000017725 Vega_transcript:Shmt1-001 UCSC:uc007jgo.1 ChEMBL:CHEMBL4396 EMBL:AF237702 EMBL:AL596215 EMBL:BC026055 EMBL:X94478 EMBL:X94479 GO:GO:0004372 GO:GO:0004372 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0005654 GO:GO:0005654 GO:GO:0005737 GO:GO:0005737 GO:GO:0005739 GO:GO:0005829 GO:GO:0005829 GO:GO:0005829 GO:GO:0006231 GO:GO:0006544 GO:GO:0006545 GO:GO:0006565 GO:GO:0006565 GO:GO:0006730 GO:GO:0008732 GO:GO:0009113 GO:GO:0009113 GO:GO:0016597 GO:GO:0019264 GO:GO:0030170 GO:GO:0035999 GO:GO:0042802 GO:GO:0042803 GO:GO:0042803 GO:GO:0046655 GO:GO:0046655 GO:GO:0051262 GO:GO:0051262 GO:GO:0051289 GO:GO:0070062 GO:GO:0070062 GO:GO:0070905 GO:GO:1904482 MGI_trans_name:Shmt1-001 PDB:1EJI Vega_translation:210001 Vega_translation:OTTMUSP00000008170 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006461 goslim_goa:GO:0006520 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0009058 goslim_goa:GO:0022607 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0044281 goslim_goa:GO:0051186 goslim_goa:GO:0065003 protein_id:AAH26055.1 protein_id:AAK15040.1 protein_id:CAA64225.1 protein_id:CAA64226.1 protein_id:CAI35264.1 OTTP:OTTMUSP00000008170 OTTT:OTTMUST00000017725 Reactome:R-MMU-1430728 Reactome:R-MMU-196757 Reactome:R-MMU-196849 Reactome:R-MMU-196854 Reactome:R-MMU-71262 Reactome:R-MMU-71291 UniParc:UPI0000021609
definition	note : transcript_id=ENSMUST00000018744 protein_id : ENSMUSP00000018744 translation : MADRDATLWASHEKMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPGLPDF

name	Shmt1 (ENSMUSG00000020534) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096420 Vega_transcript:Shmt1-006 Uniprot/SPTREMBL:G3UZ26 UCSC:uc007jgo.1 GO:GO:0004372 GO:GO:0005634 GO:GO:0005654 GO:GO:0005737 GO:GO:0005739 GO:GO:0005829 GO:GO:0006544 GO:GO:0006565 GO:GO:0009113 GO:GO:0030170 GO:GO:0035999 GO:GO:0042803 GO:GO:0046655 GO:GO:0051262 GO:GO:0070062 MGI_trans_name:Shmt1-006 Vega_translation:210002 Vega_translation:OTTMUSP00000053869 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006461 goslim_goa:GO:0006520 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0009058 goslim_goa:GO:0022607 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0044281 goslim_goa:GO:0051186 goslim_goa:GO:0065003 OTTP:OTTMUSP00000053869 OTTT:OTTMUST00000096420 UniParc:UPI00021CF4E2
definition	codon_start : 2 note : transcript_id=ENSMUST00000174719 protein_id : ENSMUSP00000134318 translation : XADRDATLWASHEKMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPGLPDF

name	Shmt1 (ENSMUSG00000020534) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096421 Vega_transcript:Shmt1-007 Uniprot/SPTREMBL:G3UZZ9 UCSC:uc007jgo.1 GO:GO:0004372 GO:GO:0005634 GO:GO:0005654 GO:GO:0005737 GO:GO:0005739 GO:GO:0005829 GO:GO:0006565 GO:GO:0009113 GO:GO:0030170 GO:GO:0042803 GO:GO:0046655 GO:GO:0051262 GO:GO:0070062 MGI_trans_name:Shmt1-007 Vega_translation:210003 Vega_translation:OTTMUSP00000053870 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006461 goslim_goa:GO:0006520 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0009058 goslim_goa:GO:0022607 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0044281 goslim_goa:GO:0051186 goslim_goa:GO:0065003 OTTP:OTTMUSP00000053870 OTTT:OTTMUST00000096421 UniParc:UPI00021CF4E3
definition	codon_start : 2 note : transcript_id=ENSMUST00000174174 protein_id : ENSMUSP00000134703 translation : XADRDATLWASHEKMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRLPCKLCCVYCPGRASWANHGLGPARRWPSDPWLHDRQEENLCHIYLL

name	Shmt1 (ENSMUSG00000020534) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096422 Vega_transcript:Shmt1-010 Uniprot/SPTREMBL:G3UYY1 UCSC:uc007jgo.1 GO:GO:0004372 GO:GO:0005634 GO:GO:0005654 GO:GO:0005737 GO:GO:0005739 GO:GO:0005829 GO:GO:0006544 GO:GO:0006565 GO:GO:0009113 GO:GO:0030170 GO:GO:0035999 GO:GO:0042803 GO:GO:0046655 GO:GO:0051262 GO:GO:0070062 MGI_trans_name:Shmt1-010 Vega_translation:210004 Vega_translation:OTTMUSP00000053871 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006461 goslim_goa:GO:0006520 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0009058 goslim_goa:GO:0022607 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0044281 goslim_goa:GO:0051186 goslim_goa:GO:0065003 OTTP:OTTMUSP00000053871 OTTT:OTTMUST00000096422 UniParc:UPI00021CF4E4
definition	codon_start : 2 note : transcript_id=ENSMUST00000174214 protein_id : ENSMUSP00000134269 translation : XADRDATLWASHEKMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPGLPDF

name
type	STS
link
xref	UniSTS_NUM:180219 UniSTS:AI642055 WI_MRC-RH:752437
definition	note : map_weight=1 standard_name : AI642055

name
type	STS
link
xref	UniSTS_NUM:209774 UniSTS:RH127015
definition	note : map_weight=1 standard_name : RH127015

name
type	STS
link
xref	UniSTS_NUM:160102 UniSTS:AI324848 WI_MRC-RH:415019
definition	note : map_weight=1 standard_name : AI324848

name
type	STS
link
xref	UniSTS_NUM:180217 UniSTS:AI385541 WI_MRC-RH:418526
definition	note : map_weight=1 standard_name : AI385541

name
type	misc_feature
link
xref
definition	note : contig AL596215.7 1..201117(-1)

name	Shmt1 (ENSMUSG00000020534)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096419 Vega_transcript:OTTMUST00000096419 MGI_trans_name:Shmt1-005 OTTT:OTTMUST00000096419
definition	note : processed_transcript note : transcript_id=ENSMUST00000174093

name	Shmt1 (ENSMUSG00000020534)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096423 Vega_transcript:OTTMUST00000096423 MGI_trans_name:Shmt1-011 OTTT:OTTMUST00000096423
definition	note : retained_intron note : transcript_id=ENSMUST00000172804

name	Shmt1 (ENSMUSG00000020534)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000017726 Vega_transcript:OTTMUST00000017726 MGI_trans_name:Shmt1-002 OTTT:OTTMUST00000017726
definition	note : retained_intron note : transcript_id=ENSMUST00000135081

name	Shmt1 (ENSMUSG00000020534)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000017727 Vega_transcript:OTTMUST00000017727 MGI_trans_name:Shmt1-003 OTTT:OTTMUST00000017727
definition	note : retained_intron note : transcript_id=ENSMUST00000124227

name	Shmt1 (ENSMUSG00000020534)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096424 Vega_transcript:OTTMUST00000096424 MGI_trans_name:Shmt1-004 OTTT:OTTMUST00000096424
definition	note : retained_intron note : transcript_id=ENSMUST00000173260

name	Shmt1 (ENSMUSG00000020534)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096425 Vega_transcript:OTTMUST00000096425 MGI_trans_name:Shmt1-008 OTTT:OTTMUST00000096425
definition	note : processed_transcript note : transcript_id=ENSMUST00000173698

name	Shmt1 (ENSMUSG00000020534)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096426 Vega_transcript:OTTMUST00000096426 MGI_trans_name:Shmt1-009 OTTT:OTTMUST00000096426
definition	note : processed_transcript note : transcript_id=ENSMUST00000172659

name	Gm24945 (ENSMUSG00000088956)
type	misc_RNA
link	VEGA Ensembl MGI
xref	MGI_trans_name:Gm24945-201
definition	note : snoRNA note : transcript_id=ENSMUST00000158331

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Shmt1 (ENSMUSG00000020534)
Transcript ID	ENSMUST00000174214

Reports
substitution
cSNPs	1
Insertion	13
Deletion	17
SNPs	+1kb 60807099(c.-79G>A), 60807104(c.-84T>C), 60807163(c.-143G>A), 60807289(c.-269A>G), 60807298(c.-278T>G), 60807326(c.-306A>G), 60807352(c.-332T>C), 60807592(c.-572T>C), 60807628(c.-608A>G), 60807758(c.-738T>C), 60808005(c.-985A>G), 60808010(c.-990G>A), 60808201(c.-1181G>C), 60808292(c.-1272T>A), 60808373(c.-1353T>C), 60808564(c.-1544T>A), 60808567(c.-1547A>G), 60808581(c.-1561T>G), 60808771(c.-1751A>G), 60808785(c.-1765G>A), 60808811(c.-1791A>G), 60808814(c.-1794G>C), 60808886(c.-1866G>T), 60808898(c.-1878T>C), 60809090(c.-2070T>C), 60809091(c.-2071C>T), 60809191(c.-2171A>T), 60809212(c.-2192T>C), 60809402(c.-2382A>T), 60809427(c.-2407C>T), 60809453(c.-2433T>C), 60809479(c.-2459A>G), 60809847(c.-2827C>G), 60810152(c.-3132T>C), 60810274(c.-3254T>G), 60810277(c.-3257T>C), 60810667(c.-3647A>G), 60810683(c.-3663G>C), 60810921(c.-3901C>T), 60811133(c.-4113A>T), 60811320(c.-4300T>G), 60811342(c.-4322G>A), 60811490(c.-4470T>A), 60812016(c.-4996A>T), 5'UTR CDS 60794873(c.873A>G), 3'UTR INTRON 60789696(c.1151-380C>T), 60789960(c.1150+186C>T), 60790816(c.1034-554A>G), 60791133(c.1034-871G>A), 60792012(c.1033+937C>G), 60792015(c.1033+934A>G), 60792795(c.1033+154A>T), 60793248(c.911-177T>C), 60794007(c.910+829G>A), 60794010(c.910+826T>C), 60794019(c.910+817G>C), 60794032(c.910+804A>G), 60794048(c.910+788A>C), 60794049(c.910+787G>T), 60794340(c.910+496G>C), 60794420(c.910+416T>C), 60794426(c.910+410C>T), 60794521(c.910+315T>C), 60794548(c.910+288C>T), 60794551(c.910+285T>C), 60794576(c.910+260C>T), 60794579(c.910+257G>A), 60794582(c.910+254A>G), 60794657(c.910+179G>A), 60795041(c.794-89A>G), 60795059(c.794-107C>A), 60795367(c.794-415G>A), 60795830(c.794-878G>C), 60795831(c.794-879T>C), 60795835(c.794-883T>G), 60795850(c.794-898C>G), 60795890(c.794-938G>C), 60795895(c.794-943T>G), 60795935(c.794-983T>G), 60795970(c.794-1018T>G), 60795971(c.794-1019A>C), 60796186(c.794-1234T>C), 60796256(c.793+1269T>C), 60796273(c.793+1252T>G), 60796434(c.793+1091G>A), 60796439(c.793+1086G>T), 60796575(c.793+950C>T), 60796614(c.793+911A>G), 60796763(c.793+762C>A), 60797147(c.793+378A>C), 60797310(c.793+215A>T), 60797423(c.793+102C>T), 60797942(c.581-205G>A), 60797988(c.581-251G>C), 60798554(c.580+40G>A), 60799124(c.499-449T>C), 60799405(c.499-730T>C), 60799527(c.499-852A>G), 60800093(c.498+1335T>C), 60800176(c.498+1252C>A), 60800467(c.498+961C>T), 60800826(c.498+602A>T), 60801406(c.498+22T>G), 60801407(c.498+21G>A), 60801825(c.337+91A>G), 60802103(c.222-72T>G), 60802139(c.222-108C>A), 60802157(c.222-126C>T), 60802158(c.222-127C>T), 60802613(c.222-582A>C), 60802761(c.222-730G>A), 60802825(c.222-794C>T), 60803110(c.222-1079C>T), 60803349(c.221+914C>T), 60803592(c.221+671T>C), 60803662(c.221+601G>A), 60803955(c.221+308A>C), 60803982(c.221+281A>G), 60803991(c.221+272T>C), 60804025(c.221+238A>T), 60804031(c.221+232T>C), 60804498(c.76-90T>C), 60804731(c.76-323T>A), 60805547(c.76-1139T>C), 60805615(c.76-1207G>C), 60805882(c.75+1064A>G), 60806514(c.75+432T>C), 60806551(c.75+395C>A), 60806560(c.75+386A>G), 60806820(c.75+126G>T), -1kb 60784180(c.4964G>A), 60784366(c.4778C>T), 60784688(c.4456G>A), 60784969(c.4175A>C), 60785134(c.4010G>A), 60785668(c.3476C>T), 60785914(c.3230A>G), 60785991(c.3153T>C), 60786140(c.3004A>C), 60786311(c.2833A>G), 60786547(c.2597A>G), 60786555(c.2589T>G), 60786576(c.2568T>C), 60786583(c.2561A>G), 60786626(c.2518A>G), 60786642(c.2502T>C), 60786930(c.2214C>T), 60786945(c.2199T>G), 60787321(c.1823T>C), 60787871(c.1273C>T), 60788092(c.1052T>C), 60788209(c.935A>G), 60788254(c.890T>C), 60788575(c.569T>G), 60788592(c.552T>G), 60788629(c.515A>G), 60788640(c.504C>T), 60788664(c.480T>C), 60788692(c.452T>C), 60788746(c.398A>G), 60788834(c.*310C>T),
Insertions	+1kb 60808329 (c.-1310_-1309insCT), 60809402 (c.-2383_-2382insTT), 60811729 (c.-4710_-4709insCAGAGCG), 5'UTR CDS 3'UTR INTRON 60792195 (c.1033+753_1033+754insA), 60792890 (c.1033+55_1033+58dupGATC), 60796072 (c.794-1122_794-1121dupCT), 60797229 (c.793+294_793+295dupAA), 60800269 (c.498+1158dupT), 60804731 (c.76-324_76-323insA), 60804852 (c.76-445_76-444insTTT), -1kb 60786500 (c.2643_2644insCTTCT), 60786899 (c.2244_2245insGAG), 60788778 (c.*365dupT),
Deletions	+1kb 60807182 (c.-165_-163delGGG), 60811394 (c.-4380_-4375delTTTTTT), 60811946 (c.-4928_-4927delCT), 5'UTR CDS 3'UTR INTRON 60790038 (c.1150+104_1150+107delAGAC), 60790476 (c.1034-215delG), 60791152 (c.1034-891delT), 60791313 (c.1034-1054_1034-1052delCGT), 60793192 (c.911-123_911-122delAA), 60793743 (c.911-673delA), 60795394 (c.794-443delA), 60795448 (c.794-497delT), 60796778 (c.793+746delA), 60801379 (c.498+41_498+48delGTGTGTGT), 60802357 (c.222-329_222-327delTGG), 60803010 (c.222-981_222-980delTT), -1kb 60787783 (c.1360delT), 60788527 (c.616delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	60794873 (p.Pro291Pro),
non-synonymous substitutions
B6 transcript (ENSMUST00000174214)	ADRDATLWASHEKMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGS CLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAV YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLE ENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEH CHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNH AIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKG TDGGRAEKVLEACSIACNKNTCPGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVAT LREEVENFASNFSLPGLPDF*
MSMv4 transcript	ADRDATLWASHEKMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGS CLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAV YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLE ENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEH CHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNH AIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKG TDGGRAEKVLEACSIACNKNTCPGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVAT LREEVENFASNFSLPGLPDF*
homology	100.00 (441 / 441)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Shmt1 (ENSMUSG00000020534)
Transcript ID	ENSMUST00000174214


..........CAACAGAAAAGAACAGGTGGGCTGCCAGCCACTGAGTAAGAGAAGAGATG
TGAATGCAGTTTTGTTCTGTTTTGCTTTTTTTGTTTTAGAGGTAGGGTTTATTTGTAGTC
CAGGCTGTCCTTGAACTCTTTGTGGACCAGGATGGCCTTAAACTCAAGAGATCTACCTGC
GTCTGCTTCCTGAGTTCTGGAATTTAAGGCTTGTGCCACTTGCCTGGACTGAGTGCAGTG
TTTTTATTTGATATTTGTTTATTTTATGTGTACCGCTGTTTTTGCACAACTGGTGTCCAG
TGCCTAGTCAGAGGAGTTTCTTACAGCAAAACCTCATGTGTGATTCCATGGAGTCTGAGA
GAAATGGGTCCTGATGGGGTGAAGATTGCAGGACTTAGTTGGAGAATGCTTGCTGCATAT
GGTGGAGTATCCCCATAATCCTAGCACTTAGGAGGTGGAAGAAAAAACAGGAGTACAGGT
CCTTCCTAGCAACATGCCAACCTGGACCAGCAACATGCCAATCTGGACTGTGAGAGAAAA
ATATACCTATAAGATGCTGCTGTTGGGCATCTTGGAAGGAGTACCCCAATTGTTCTCTGT
TAATTGATGTACCCAGAAAGCCCTGAGGAGTTGGTAAGCATGGAATCTGGGCTCCACCAG
CAGAGTGGATTTAAGTAAACGGTCCGATTGATCATCTAGACATAGGACTTCTTCCAGTCT
AGCTGTGCTGAGCGAACTGGAAGATTAGAAGAGACCTTTGTTTAGTTGGGAATACTATGT
TCAGTGTGGAACTACTAAGAAGGCCTTGGCTGTCCGGTAGGCAGCTGCGGAATTGGGGTG
GGGGGGGGGTTGATTTGAAGTTCTGTAAAGAGCCCAAGTGACTTTAAAGGATTTATGCGC
CTGCTTACAAAAGTGTTCAGCTAAGCTCAGGAAAGACTTGCTGGGGTTGGTGCTGGAATC
AATGTGTACTTTATTTACCCTTTTTGTAGGCAACTCTGAACCAGTGCAAT
GGCAGACAGGGATGCCACCCTGTGGGCTTCTCATGAGAAGATGTTGTCGCAGCCCCTCAAGGACAGTGATGCCGAG
GTGAGACCTGTGGCACCTTCATATG..........CCCACGTCTGCTTTCTTCTGATAAG
GTTTACAGCATCATTAAAAAGGAGAGCAACCGGCAGAGGGTCGGATTAGAGCTGATTGCCTCGGAGAATTTTGCCAGCCGAGCTGTGTTGGAGGCCCTGGGATCTTGCTTAAATAACAAATACTCTGAGGGATATCCAGGCCAAAG
GTGAGTGGGCATTCTTAAAGTCCTG..........GATGTAGACCTTGCCTCTCTTCCAG
GTATTATGGCGGGACCGAGTTCATCGATGAGCTGGAGATGCTGTGTCAGAAGCGTGCATTACAGGCCTACCATCTGGATCCTCAGTGCTGGGGTGTCAATGTCCAGCCTTATTCAG
GTGATTGATGCATCCACATAGACCC..........AATACTCATGGCTTCTCTGTTTTAG
GCTCCCCTGCAAACTTTGCTGTGTATACTGCCCTGGTAGAGCCTCATGGGCGAATCATGGGCTTGGACCTGCCAGACGGTGGCCATCTGACCCATGGCTTCATGACAGACAAGAAGAAAATCTCTGCCACATCTATCTTCTTTGAATCCATGCCTTATAAG
GTAGGTGTGTGTGTGTGTGTAGGTG..........CACACCTGTGTCTTGACCCCAACAG
GTGTACCCAGAGACTGGGTACATCAACTATGACCAGCTGGAGGAGAATGCCAGCCTCTTCCACCCGAAGCTGATCATCGCAG
GTGAGCGGCACGCGGGAAGCAGTCT..........TACCATGTCATCTTCCCTGTCTCAG
GGACCAGCTGCTACTCCCGGAACCTGGACTACGCACGGCTGCGGAAGATTGCGGATGATAATGGGGCGTATCTCATGGCAGACATGGCACATATCAGTGGGCTCGTGGCAGCTGGGGTGGTGCCCTCCCCCTTTGAACACTGCCATGTAGTGACCACTACAACCCACAAGACCCTGAGAGGCTGCCGTGCTGGTATGATATTCTACAGAAAGG
GTAAGTTCCCCTATGCTGGGACAGA..........GTTAACAGTCTAGTTTCTTTACCAG
GTGTGCGCAGTGTGGATCCCAAGACTGGCAAAGAGACTTACTATGAACTGGAGTCCCTCATCAACTCTGCCGTGTTCCCGGGCCTTCAGGGGGGTCCTCACAACCATGCCATTGCTG
GTAACGTCACCAGATCTATTGTAGA..........GCTGTCTCTTTAATTCTTTAATCAG
GTGTTGCTGTGGCCCTGAAGCAAGCCATGACTACAGAATTCAAAATCTACCAGCTCCAGGTGTTGGCCAACTGCAGGGCTCTGTCTGATGCACTCACAGAGCTAGGCTACAAAATAGTCACAG
GTACCGTGAAGGCACAGAGTGCTGG..........CTCCATTCTGTTCATCTGTTTCCAG
GTGGCTCTGATAATCACTTGATCCTAATGGATCTGCGTTCTAAGGGTACTGATGGTGGAAGGGCTGAGAAGGTACTAGAAGCCTGTTCTATCGCCTGCAACAAGAATACCTGCCCAG
GTGAGACTCCTCCGTGCTTTTCCCT..........CCACATGACACTGTCTTTTGCACAG
GGATAGAGTTGACACTGCAGATTCAGAGCCACATGGCCACGAAGGCCACACTGAAAGAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTGCTTCCAACTTCTCACTACCTGGCCTTCCTGACTTCTGA
CAGGAACAGCCTGTGTTTGCCAAGAGGGTAGGATTGTTCCGGGACCCTGTGAACCCTGTG
CCCTCTTGAGGCTGAGAAGTGGACCACTGAGCTGTACCATGCTTTCTTTGGTGGGTGTTT
CTGTTTACCTGTTTTCAAATATTTTGGGAACAGGTTATTAAGGACTTGAAATTTGAAACG
TTATGTAGCCATTAGATCTCCTCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAG
AATTGTCCTTTCTGCTTACTCGGTGGGTCCTGTAGCAGGTAAGCAAATGTTCACTTCACC
CTTGTGTTTTCCACTCTTCCTTTTCTGTTGCCCAGATACCAGAGGAGCATTGAGTTTTCT
GTCTTAAGTTTGAGGTTAGAAACTAGGTAAGTGTATAGGCAAGAAGTTAGTGTTAGGGCT
GGGATGACGTCTCTGCACTTGGCTTAGGACCCCGGCTTGATTCTCAGTCGCATGGTGAAC
CACAACCACCTGTAACTTCAGTTTCAGAGAATCAGTGCCCTCTTCTGGGTTCTGAGGACA
CCGGGCACACAGGAAGTACAGGCATACAGCAGGCAGAATGGTGATACACAGAGAATTTTG
TTTTAAAGAAAAAAAATTACAGTCAGCAACTTAATGTAATAGAAGGGCTAGGGAGTGTCA
CTTAGAGATAATATACATATTCCGTATTTGTGACGCCCTGGGTTCATGCCTAGGACACAA
AGACAAAAAAGTCTTGTACAATTGGCTGTCTCCATGGGTATGAATCCCCTCCTGGTTTAA
GAATCAGCAGAGGCCAAAGGCTTTATATTCCACCTGCCTGAGATAAGCAGCTCCTTCCTA
CAATTAGGAACCCAGATGCCACCTTCTGAAAGAGTCTTTATTTGTACATCGCTGAATTGC
AAACCATCAGTAACTTTTTAATATGGACAATCAAGTTTTTACCCACAGAATGTCTACAAG
AATTATATTTTTAAAAAATACAACCAGTTTTTATATTTTA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CAACAGAAAAGAACAGGTGGGCTGCCAGCCACTGAGTAAGAGAAGAGATG TGAATGCAGTTTTGTTCTGTTTTGCTTTTTTTGTTTTAGAGGTAGGGTTTATTTGTAGTC CAGGCTGTCCTTGAACTCTTTGTGGACCAGGATGGCCTTAAACTCAAGAGATCTACCTGC GTCTGCTTCCTGAGTTCTGGAATTTAAGGCTTGTGCCACTTGCCTGGACTGAGTGCAGTG TTTTTATTTGATATTTGTTTATTTTATGTGTACCGCTGTTTTTGCACAACTGGTGTCCAG TGCCTAGTCAGAGGAGTTTCTTACAGCAAAACCTCATGTGTGATTCCATGGAGTCTGAGA GAAATGGGTCCTGATGGGGTGAAGATTGCAGGACTTAGTTGGAGAATGCTTGCTGCATAT GGTGGAGTATCCCCATAATCCTAGCACTTAGGAGGTGGAAGAAAAAACAGGAGTACAGGT CCTTCCTAGCAACATGCCAACCTGGACCAGCAACATGCCAATCTGGACTGTGAGAGAAAA ATATACCTATAAGATGCTGCTGTTGGGCATCTTGGAAGGAGTACCCCAATTGTTCTCTGT TAATTGATGTACCCAGAAAGCCCTGAGGAGTTGGTAAGCATGGAATCTGGGCTCCACCAG CAGAGTGGATTTAAGTAAACGGTCCGATTGATCATCTAGACATAGGACTTCTTCCAGTCT AGCTGTGCTGAGCGAACTGGAAGATTAGAAGAGACCTTTGTTTAGTTGGGAATACTATGT TCAGTGTGGAACTACTAAGAAGGCCTTGGCTGTCCGGTAGGCAGCTGCGGAATTGGGGTG GGGGGGGGGTTGATTTGAAGTTCTGTAAAGAGCCCAAGTGACTTTAAAGGATTTATGCGC CTGCTTACAAAAGTGTTCAGCTAAGCTCAGGAAAGACTTGCTGGGGTTGGTGCTGGAATC AATGTGTACTTTATTTACCCTTTTTGTAGGCAACTCTGAACCAGTGCAAT
1	EXON 1	60806946	60807021	-	0	76	GGCAGACAGGGATGCCACCCTGTGGGCTTCTCATGAGAAGATGTTGTCGCAGCCCCTCAA GGACAGTGATGCCGAG
	INTRON 1 - 2	60804409	60806945			2537	GTGAGACCTGTGGCACCTTCATATG..........CCCACGTCTGCTTTCTTCTGATAAG
2	EXON 2	60804263	60804408	0	2	146	GTTTACAGCATCATTAAAAAGGAGAGCAACCGGCAGAGGGTCGGATTAGAGCTGATTGCC TCGGAGAATTTTGCCAGCCGAGCTGTGTTGGAGGCCCTGGGATCTTGCTTAAATAACAAA TACTCTGAGGGATATCCAGGCCAAAG
	INTRON 2 - 3	60802032	60804262			2231	GTGAGTGGGCATTCTTAAAGTCCTG..........GATGTAGACCTTGCCTCTCTTCCAG
3	EXON 3	60801916	60802031	2	1	116	GTATTATGGCGGGACCGAGTTCATCGATGAGCTGGAGATGCTGTGTCAGAAGCGTGCATT ACAGGCCTACCATCTGGATCCTCAGTGCTGGGGTGTCAATGTCCAGCCTTATTCAG
	INTRON 3 - 4	60801589	60801915			327	GTGATTGATGCATCCACATAGACCC..........AATACTCATGGCTTCTCTGTTTTAG
4	EXON 4	60801428	60801588	1	0	161	GCTCCCCTGCAAACTTTGCTGTGTATACTGCCCTGGTAGAGCCTCATGGGCGAATCATGG GCTTGGACCTGCCAGACGGTGGCCATCTGACCCATGGCTTCATGACAGACAAGAAGAAAA TCTCTGCCACATCTATCTTCTTTGAATCCATGCCTTATAAG
	INTRON 4 - 5	60798676	60801427			2752	GTAGGTGTGTGTGTGTGTGTAGGTG..........CACACCTGTGTCTTGACCCCAACAG
5	EXON 5	60798594	60798675	0	1	82	GTGTACCCAGAGACTGGGTACATCAACTATGACCAGCTGGAGGAGAATGCCAGCCTCTTC CACCCGAAGCTGATCATCGCAG
	INTRON 5 - 6	60797738	60798593			856	GTGAGCGGCACGCGGGAAGCAGTCT..........TACCATGTCATCTTCCCTGTCTCAG
6	EXON 6	60797525	60797737	1	1	213	GGACCAGCTGCTACTCCCGGAACCTGGACTACGCACGGCTGCGGAAGATTGCGGATGATA ATGGGGCGTATCTCATGGCAGACATGGCACATATCAGTGGGCTCGTGGCAGCTGGGGTGG TGCCCTCCCCCTTTGAACACTGCCATGTAGTGACCACTACAACCCACAAGACCCTGAGAG GCTGCCGTGCTGGTATGATATTCTACAGAAAGG
	INTRON 6 - 7	60794953	60797524			2572	GTAAGTTCCCCTATGCTGGGACAGA..........GTTAACAGTCTAGTTTCTTTACCAG
7	EXON 7	60794836	60794952	1	1	117	GTGTGCGCAGTGTGGATCCCAAGACTGGCAAAGAGACTTACTATGAACTGGAGTCCCTCA TCAACTCTGCCGTGTTCCCGGGCCTTCAGGGGGGTCCTCACAACCATGCCATTGCTG
	INTRON 7 - 8	60793072	60794835			1764	GTAACGTCACCAGATCTATTGTAGA..........GCTGTCTCTTTAATTCTTTAATCAG
8	EXON 8	60792949	60793071	1	1	123	GTGTTGCTGTGGCCCTGAAGCAAGCCATGACTACAGAATTCAAAATCTACCAGCTCCAGG TGTTGGCCAACTGCAGGGCTCTGTCTGATGCACTCACAGAGCTAGGCTACAAAATAGTCA CAG
	INTRON 8 - 9	60790263	60792948			2686	GTACCGTGAAGGCACAGAGTGCTGG..........CTCCATTCTGTTCATCTGTTTCCAG
9	EXON 9	60790146	60790262	1	1	117	GTGGCTCTGATAATCACTTGATCCTAATGGATCTGCGTTCTAAGGGTACTGATGGTGGAA GGGCTGAGAAGGTACTAGAAGCCTGTTCTATCGCCTGCAACAAGAATACCTGCCCAG
	INTRON 9 - 10	60789317	60790145			829	GTGAGACTCCTCCGTGCTTTTCCCT..........CCACATGACACTGTCTTTTGCACAG
10	EXON 10	60789144	60789316	1	-	173	GGATAGAGTTGACACTGCAGATTCAGAGCCACATGGCCACGAAGGCCACACTGAAAGAGT TCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAG AAGTGGAGAACTTTGCTTCCAACTTCTCACTACCTGGCCTTCCTGACTTCTGA
	3' upstream sequence						CAGGAACAGCCTGTGTTTGCCAAGAGGGTAGGATTGTTCCGGGACCCTGTGAACCCTGTG CCCTCTTGAGGCTGAGAAGTGGACCACTGAGCTGTACCATGCTTTCTTTGGTGGGTGTTT CTGTTTACCTGTTTTCAAATATTTTGGGAACAGGTTATTAAGGACTTGAAATTTGAAACG TTATGTAGCCATTAGATCTCCTCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAG AATTGTCCTTTCTGCTTACTCGGTGGGTCCTGTAGCAGGTAAGCAAATGTTCACTTCACC CTTGTGTTTTCCACTCTTCCTTTTCTGTTGCCCAGATACCAGAGGAGCATTGAGTTTTCT GTCTTAAGTTTGAGGTTAGAAACTAGGTAAGTGTATAGGCAAGAAGTTAGTGTTAGGGCT GGGATGACGTCTCTGCACTTGGCTTAGGACCCCGGCTTGATTCTCAGTCGCATGGTGAAC CACAACCACCTGTAACTTCAGTTTCAGAGAATCAGTGCCCTCTTCTGGGTTCTGAGGACA CCGGGCACACAGGAAGTACAGGCATACAGCAGGCAGAATGGTGATACACAGAGAATTTTG TTTTAAAGAAAAAAAATTACAGTCAGCAACTTAATGTAATAGAAGGGCTAGGGAGTGTCA CTTAGAGATAATATACATATTCCGTATTTGTGACGCCCTGGGTTCATGCCTAGGACACAA AGACAAAAAAGTCTTGTACAATTGGCTGTCTCCATGGGTATGAATCCCCTCCTGGTTTAA GAATCAGCAGAGGCCAAAGGCTTTATATTCCACCTGCCTGAGATAAGCAGCTCCTTCCTA CAATTAGGAACCCAGATGCCACCTTCTGAAAGAGTCTTTATTTGTACATCGCTGAATTGC AAACCATCAGTAACTTTTTAATATGGACAATCAAGTTTTTACCCACAGAATGTCTACAAG AATTATATTTTTAAAAAATACAACCAGTTTTTATATTTTA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Shmt1 (ENSMUSG00000020534)
Transcript ID	ENSMUST00000174214

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 441 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information