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Target CDS Information

Gene Symbol (Gene ID) Slit2 (ENSMUSG00000031558)
Cross Reference
CCDS CCDS71586.1
EMBL AC101004, AC113542, AC157351
GO GO:0001656, GO:0001657, GO:0001657, ...show all
goslim_goa GO:0000902, GO:0003013, GO:0003674, ...show all
MGI_trans_name Slit2-006
OTTP OTTMUSP00000053964
OTTT OTTMUST00000096562
RefSeq_mRNA NM_001291227.1
RefSeq_mRNA_predicted XM_006503812, XM_006503813.2
RefSeq_peptide NP_001278156
RefSeq_peptide_predicted XP_006503876.1, XP_006503877.1, XP_011239010.1
UCSC uc012dwb.2
UniParc UPI00021CF68C
Uniprot/SPTREMBL G3UYX7
Vega_transcript OTTMUST00000096562, Slit2-006
Vega_translation 193627, OTTMUSP00000053964
Definition protein_id:ENSMUSP00000134263
translation:
MSGIGWQTLSLSLGLVLSILNKVAPQACPAQCSCSGSTVDCHGLALRSVPRNIPRNTERL
DLNGNNITRITKIDFAGLRHLRVLQLMENRISTIERGAFQDLKELERLRLNRNNLQLFPE
LLFLGTAKLYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGAFRALRDLEVL
TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS
HLRGHNVAEVQKREFVCSDEEEGHQSFMAPSCSVLHCPAACTCSNNIVDCRGKGLTEIPT
NLPETITEIRLEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSLNSLVLY
GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTVAKGTF
SALRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKF
RCSAKEQYFIPGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQRLNKIPDHIPQYTA
ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN
VQHKMFKGLESLKTLMLRSNRISCVGNDSFIGLGSVRLLSLYDNQITTVAPGAFDSLHSL
STLNLLANPFNCNCHLAWLGEWLRRKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDGN
DDNSCSPLSRCPSECTCLDTVVRCSNKGLKVLPKGIPKDVTELYLDGNQFTLVPKELSNY
KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND
ISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKL
LLTTPSKKFTCQGPVDITIQAKCNPCLSNPCKNDGTCNNDPVDFYRCTCPYGFKGQDCDV
PIHACISNPCKHGGTCHLKEGENAGFWCTCADGFEGENCEVNIDDCEDNDCENNSTCVDG
INNYTCLCPPEYTAANLNEVEKGELCEEKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPG
YIGEHCDIDFDDCQDNKCKNGAHCTDAVNGYTCVCPEGYSGLFCEFSPPMVLPRTSPCDN
FDCQNGAQCIIRINEPICQCLPGYLGEKCEKLVSVNFVNKESYLQIPSAKVRPQTNITLQ
IATDEDSGILLYKGDKDHIAVELYRGRVRASYDTGSHPASAIYSVETINDGNFHIVELLT
LDSSLSLSVDGGSPKVITNLSKQSTLNFDSPLYVGGMPGKNNVASLRQAPGQNGTSFHGC
IRNLYINSELQDFRKMPMQTGILPGCEPCHKKVCAHGMCQPSSQSGFTCECEEGWMGPLC
DQRTNDPCLGNKCVHGTCLPINAFSYSCKCLEGHGGVLCDEEEDLFNPCQMIKCKHGKCR
LSGVGQPYCECNSGFTGDSCDREISCRGERIRDYYQKQQGYAACQTTKKVSRLECRGGCA
GGQCCGPLRSKRRKYSFECTDGSSFVDEVEKVVKCGCARCAS

Chromosome 5
Length
Position(start - end)
319200
47985040 - 48304241
Orient to Chromosome plus
Link Location : (5:47985040-48304241)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Slit2 (ENSMUSG00000031558)
Transcript ID ENSMUST00000174421
Reports
substitution
cSNPs10
Insertion197
Deletion269
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num4
synonymous substitutions 48217512 (p.Ser377Ser), 48224774 (p.Pro532Pro), 48257098 (p.Gly985Gly), 48283460 (p.Arg1225Arg), 48302795 (p.Tyr1406Tyr), 48302822 (p.Gly1415Gly),
non-synonymous substitutions 47987877 (p.Ile73Thr), 48224777 (p.Asp533Glu), 48281756 (p.Asp1087Glu), 48302385 (p.Met1336Val),
B6 transcript
(ENSMUST00000174421)
MSGIGWQTLSLSLGLVLSILNKVAPQACPAQCSCSGSTVDCHGLALRSVPRNIPRNTERL
DLNGNNITRITKIDFAGLRHLRVLQLMENRISTIERGAFQDLKELERLRLNRNNLQLFPE
LLFLGTAKLYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGAFRALRDLEVL
TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS
HLRGHNVAEVQKREFVCSDEEEGHQSFMAPSCSVLHCPAACTCSNNIVDCRGKGLTEIPT
NLPETITEIRLEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSLNSLVLY
GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTVAKGTF
SALRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKF
RCSAKEQYFIPGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQRLNKIPDHIPQYTA
ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN
VQHKMFKGLESLKTLMLRSNRISCVGNDSFIGLGSVRLLSLYDNQITTVAPGAFDSLHSL
STLNLLANPFNCNCHLAWLGEWLRRKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDGN
DDNSCSPLSRCPSECTCLDTVVRCSNKGLKVLPKGIPKDVTELYLDGNQFTLVPKELSNY
KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND
ISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKL
LLTTPSKKFTCQGPVDITIQAKCNPCLSNPCKNDGTCNNDPVDFYRCTCPYGFKGQDCDV
PIHACISNPCKHGGTCHLKEGENAGFWCTCADGFEGENCEVNIDDCEDNDCENNSTCVDG
INNYTCLCPPEYTAANLNEVEKGELCEEKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPG
YIGEHCDIDFDDCQDNKCKNGAHCTDAVNGYTCVCPEGYSGLFCEFSPPMVLPRTSPCDN
FDCQNGAQCIIRINEPICQCLPGYLGEKCEKLVSVNFVNKESYLQIPSAKVRPQTNITLQ
IATDEDSGILLYKGDKDHIAVELYRGRVRASYDTGSHPASAIYSVETINDGNFHIVELLT
LDSSLSLSVDGGSPKVITNLSKQSTLNFDSPLYVGGMPGKNNVASLRQAPGQNGTSFHGC
IRNLYINSELQDFRKMPMQTGILPGCEPCHKKVCAHGMCQPSSQSGFTCECEEGWMGPLC
DQRTNDPCLGNKCVHGTCLPINAFSYSCKCLEGHGGVLCDEEEDLFNPCQMIKCKHGKCR
LSGVGQPYCECNSGFTGDSCDREISCRGERIRDYYQKQQGYAACQTTKKVSRLECRGGCA
GGQCCGPLRSKRRKYSFECTDGSSFVDEVEKVVKCGCARCAS*
MSMv4 transcript
MSGIGWQTLSLSLGLVLSILNKVAPQACPAQCSCSGSTVDCHGLALRSVPRNIPRNTERL
DLNGNNITRITKTDFAGLRHLRVLQLMENRISTIERGAFQDLKELERLRLNRNNLQLFPE
LLFLGTAKLYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGAFRALRDLEVL
TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS
HLRGHNVAEVQKREFVCSDEEEGHQSFMAPSCSVLHCPAACTCSNNIVDCRGKGLTEIPT
NLPETITEIRLEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSLNSLVLY
GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTVAKGTF
SALRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKF
RCSAKEQYFIPGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQRLNKIPEHIPQYTA
ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN
VQHKMFKGLESLKTLMLRSNRISCVGNDSFIGLGSVRLLSLYDNQITTVAPGAFDSLHSL
STLNLLANPFNCNCHLAWLGEWLRRKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDGN
DDNSCSPLSRCPSECTCLDTVVRCSNKGLKVLPKGIPKDVTELYLDGNQFTLVPKELSNY
KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND
ISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKL
LLTTPSKKFTCQGPVDITIQAKCNPCLSNPCKNDGTCNNDPVDFYRCTCPYGFKGQDCDV
PIHACISNPCKHGGTCHLKEGENAGFWCTCADGFEGENCEVNIDDCEDNDCENNSTCVDG
INNYTCLCPPEYTAANLNEVEKGELCEEKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPG
YIGEHCEIDFDDCQDNKCKNGAHCTDAVNGYTCVCPEGYSGLFCEFSPPMVLPRTSPCDN
FDCQNGAQCIIRINEPICQCLPGYLGEKCEKLVSVNFVNKESYLQIPSAKVRPQTNITLQ
IATDEDSGILLYKGDKDHIAVELYRGRVRASYDTGSHPASAIYSVETINDGNFHIVELLT
LDSSLSLSVDGGSPKVITNLSKQSTLNFDSPLYVGGMPGKNNVASLRQAPGQNGTSFHGC
IRNLYINSELQDFRKVPMQTGILPGCEPCHKKVCAHGMCQPSSQSGFTCECEEGWMGPLC
DQRTNDPCLGNKCVHGTCLPINAFSYSCKCLEGHGGVLCDEEEDLFNPCQMIKCKHGKCR
LSGVGQPYCECNSGFTGDSCDREISCRGERIRDYYQKQQGYAACQTTKKVSRLECRGGCA
GGQCCGPLRSKRRKYSFECTDGSSFVDEVEKVVKCGCARCAS*
homology99.74 (1543 / 1543)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Slit2 (ENSMUSG00000031558)
Transcript ID ENSMUST00000174421
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTGTCTGCTGAGAGATGCTGACTACTGCCAGACATCACACTGAAGAGACA
AGAAGGAAGGAGGAAATTCATTTTCAAAACAGTGCAGGGGTGGGGATGGGGATGGGGGTA
GGGGTGAGGTGGGGATGGGGGTGGGGTGTCCAGTGAGGCACTGAATTAAGGAAAGCCTTC
TAGTATAATGGGCATCGCTAGGATTTACTTCCTCTTCCCTTTGCCAGCTAAGAGAGTAAA
ACCGTAGGGACCTATCCAAACCCTTGGAGTTGTGTGAGTTTGTATAGTGCCCACGCAACC
AAATCCCTCACCATGGCGTTTTTTAAGTAAGTGATTATAAAGAAAGGGTTAACGGAAGAC
GGTGGCTTAGGGATGGGAAGGCCAGCGAGAAGGTTGAAAACACTACTCCCAACTTGCTAC
AACTCTAAACTTTGAAGCCACCCAAACAAAATGTGTGTGTGTGGGGGGGGGGGGGGGGAT
AAAATGCGCGCTCACGGAGGCAGATCTATTTCAGTAGAGTTTTCTTGTTTTGTTTTGTTT
TTGTTTTAATTTTAAAATCATAATCTCGCTGTCTCTCTCTTTCTCTCTTTCAGTGTTGCA
AGCCCAGAGCGGTCCCCTTTAGGATCGCGACTCAAAAAGCTACAACAGAGGCTCTGCCTT
CTCCATTTATATATGAGCTGTCCTCAAAGCTGCCCCTCTCCTCGTTCTCCCGCTGGGAAC
CTCGGTTTCTGGGCTCTGGTCAGCTCTGAGGCCAAGGAGTTGTGTGGAGGAGACCCGAGC
TCTTCTTTCTGGTGGCCAAGTTTGCTGGATCCTAGGAGTCTGGGCGCGAGCAGGGGCGTA
CGGGAACGCGCGCCGCTGTCTGCAGCCGGAGCTGCCAGCCTGGGCCTCACCTCTCCCGGG
CGAGGTGCAGGCTTTCCGCGCGCGGCCAGGGGGCGGGGCGAGGCTTGCGGGGGCGGAGCC
AAGGGCGGGGGCTCCGGCTGCTATATAAAGACCGGCGGCCGCTTTAACTT
1 EXON 1 47983154 47985218 - 2 2065
CGGACTTGGGCTTATTTATTTACGGAGCGCCTGGACGGCGGAGGCTGGAGGAGGCGGCGG
CTGTGGCTGCCGCAGACGGTGGTTTAAAAAAAGGAGGAGAAGGAGGCGGCGGCGGCGGCG
AGGGATGGGAGCGCCCAGGCTTCAGGGCGCAGGCCGGAGCTGCCGAGCTTTCCTGAGGCT
GCGGGAGTACTGAGGAGAAAAAGGGGACGTCCCGGGGGCCCACAGGCGACTCCAGAGGCG
CGGACTGGGGTCTTTTTGTTTGGCTGCGCTCAGCGCCCAGCAGCCAGAGCGGACAACTCC
AGTTACAACAACAACCCACCTTCCAGCAGCCAGGCGAGACTTAGGCTGCGGAGTCCGTCC
TATTGTTTAGACACTTGCCTGGGGCTCTGGAGCGCCAGTCCCTGCTCAGTCTCCGCCTTC
CCTCTCTCTCCACTTTCCTCCCGGGAACCGCGAGTGCCGAAAGCCTCCCTGAGAGGGGAA
GGGGCTGGAAGCCAAGCGCTGCCTAGTCTGTGGTCGCCGAGTCAGGTGCAACGTCCGGGG
CTAAGCGGCATCTCAACGTCTGCGGCTGGACTCCTCCCGTGACAGTGGGTGACCGGATCC
AACGCCTGGGGAAACTTCCTGCACTTTGAGGCTGAGGACCCACTTGTAGGGGCTGCCCGA
GGGGTGGCTGAGAGGCTGCATACAGCAGGACGTCGCTGTTGGCTGTTGTTTCTTCTACCT
GTGCCGTCAGGTGTGTGCTGCGGAGCTGCGGCGTATCCCGGAGACCAGAGTGGCTGACAA
GAGCGCGCACACTCTACTGCCATTCGGTTGTCGCCTGGGGTCTGCCAGGGTAGCAGATCC
CCATCTTTCTGCCTTCTACCTAGTAGTCATCCATCAGGGCACAGTAGCAGCACTGGCATC
GCGGACACCTAGTCTTTGCTTTGCTCTTCTGGGCTCGCCTATCTGCAAATCTTGCCCAAG
CTAGAGGACCTTTCCTACTCAACTTGGCTTACTGGATTTTTCCCCACTGCAGGAGTGAGG
ACTAGTGGATATTCCTGCAAGGCTGCAGCAGTCCGACTGCCCTTTTGTCTCTCTGTGTGA
CCTCAGGGGCAGGCCCTGGTGCAGAGCGTCGCCAAGGACGCCGGGAGGGAGGCGGGATTG
CCAAGATATCCTCCAGTGAAGTGCATGTGTGTGTGCAAGCCATCCTTGGCTGTCGGGAAG
TGGAGAAGACGGTTGAGGCTGCTGCTGTGCCGCAGGAGTGGAGAGGCCCCGGGAGCTGAG
CCCTGAGCCCCGCATCACCGCCCGGCACCCCCAAGGCTGTCTGAATACCCGGTGCGCCCC
CACGCGCGCCATGACCAGTCTCTCCGAGGGCTCTGCTTTGGACCTGCCAGGCCCTTGCGC
CTTCTAGCTTCGGGGGAATCCACTTTGATCAGGGCCACCATTACTGTTTAAGTCCCCTCC
TCAGCCTTGTACTCTTTCCACTGGAATCGGATTTGCTAGAGGGTTCGTGGGATCAGAAGT
CCTCCCTTGTCCTCAAGCAACCAGCCTCTGCATCTTCGCGGACACTGCAAGTAGGAGCTC
TTTTACCGCCAAGTTGAAGTCGCGCACTGTCCTCACAGCTGCTCCGGGGTCTACTCCCAG
CCTGAGTCGGGCCTATTGATATTCAGAACTTGAAGTTGCCCACGGATCTTCTGCTCTGCT
AGAAAGGCTTGAAGAGCAGAGGAAAGACCTGTGCTTCTGTCAGCTCTCCTGCCCCATATC
ACTGTTCTAGATTACTGTGTGAGCATCTCCCCGGGTGCTGTGGGCTGCAAGCCCAGCGCC
AGGCACTGGGCCTCGGACACTGCCCGGTTTTTACACAACCAAAAGCTCAAGAGAAGTCCT
TCAAAGCAAGGAGTCTATTAGGGAAGATGAGTGGCATTGGCTGGCAGACACTGTCCCTAT
CGCTGGGGTTAGTGTTGTCGATCTTGAACAAGGTGGCGCCGCAGGCGTGCCCGGCCCAGT
GCTCCTGTTCAGGCAGCACGGTGGACTGTCATGGGCTGGCACTGCGCAGTGTGCCCAGGA
ATATCCCCCGCAACACCGAGAGACT
INTRON 1 - 2 47985219 47987838 2620
GTGAGTATGGGTTCTTTGCCCTCCC..........TTTTTTTTTTTTTGGTGTCTCTTAG
2 EXON 2 47987839 47987910 2 2 72
GGATTTGAATGGAAATAACATCACGAGGATCACGAAGACAGATTTTGCTGGTCTCAGGCA
CCTCAGAGTTCT
INTRON 2 - 3 47987911 47989119 1209
GTAAGTGTGTTCATGCTTTGCATCT..........CAGCATGTTCTATTTTGCATTTCAG
3 EXON 3 47989120 47989191 2 2 72
TCAGCTCATGGAGAACAGAATCAGCACCATCGAGAGGGGAGCATTCCAGGATCTTAAGGA
GCTGGAAAGACT
INTRON 3 - 4 47989192 48000308 11117
GTAAGTATTTTCAGTTCTAAACCCA..........TTTGTTTGTTTTGTTTTCTCCAAAG
4 EXON 4 48000309 48000380 2 2 72
GCGTTTAAACAGAAATAACCTTCAGTTGTTTCCTGAGCTGCTGTTTCTCGGGACTGCGAA
GCTCTACCGGCT
INTRON 4 - 5 48000381 48170154 169774
GTAAGTAGACACTCAAGTGCTTGCT..........TATTTCTCCTTCATTTTGTTTCTAG
5 EXON 5 48170155 48170226 2 2 72
TGATCTCAGTGAAAATCAAATTCAAGCAATTCCAAGGAAGGCTTTCCGTGGGGCAGTTGA
CATTAAAAACCT
INTRON 5 - 6 48170227 48182245 12019
GTAAGTATAGAAGTATACCTTAATT..........GGCGTCTGCTTAATCTGTTTAACAG
6 EXON 6 48182246 48182317 2 2 72
GCAACTGGATTACAACCAGATCAGCTGCATTGAAGATGGGGCGTTCAGAGCTCTACGAGA
TCTGGAAGTGCT
INTRON 6 - 7 48182318 48186495 4178
GTGAGTACTGCTGATTTCTTCCTGG..........TTTTTAACTTTTTTCTATTCTACAG
7 EXON 7 48186496 48186567 2 2 72
CACTCTGAACAATAACAATATTACTAGACTTTCAGTGGCAAGTTTCAACCATATGCCTAA
ACTTAGGACATT
INTRON 7 - 8 48186568 48189428 2861
GTAAGTAGTCAACATGTACAGAAAG..........TCTTGTTTTGAACTTCTTCCTTTAG
8 EXON 8 48189429 48189592 2 1 164
TCGACTCCACTCGAACAACTTGTACTGCGACTGCCACCTAGCCTGGCTCTCAGACTGGCT
TCGCCAAAGGCCACGGGTGGGCTTGTACACTCAGTGTATGGGCCCATCCCACCTGAGGGG
CCACAATGTAGCAGAGGTTCAAAAACGAGAGTTTGTCTGCAGTG
INTRON 8 - 9 48189593 48191002 1410
GTAAGATCAGTGAGGTTACAGTATT..........TTGCTCTTTCCTTGCTGCCTTCCAG
9 EXON 9 48191003 48191014 1 1 12
ATGAGGAAGAAG
INTRON 9 - 10 48191015 48192192 1178
GCAAGTTAAATGTGTGTGTGTGTTA..........CTTTCTCTCTCTTTTTATCCTTTAG
10 EXON 10 48192193 48192331 1 2 139
GTCACCAGTCATTCATGGCTCCCTCCTGCAGTGTGCTGCACTGCCCCGCTGCTTGTACCT
GTAGCAACAACATTGTAGACTGCCGAGGGAAAGGTCTCACTGAGATCCCCACAAATCTGC
CTGAGACCATCACAGAAAT
INTRON 10 - 11 48192332 48210755 18424
GTATGTGCCCTGGATTTTCTAATTC..........GTTTTGTTTTGTTTTTTCGTCACAG
11 EXON 11 48210756 48210827 2 2 72
ACGTTTGGAACAGAACTCCATCAGGGTCATCCCTCCAGGAGCCTTCTCACCATACAAAAA
GCTTAGACGACT
INTRON 11 - 12 48210828 48211282 455
GTGAGTTAACAGGGCAGTGCAAAGA..........AACCCAACCTTATTTCTGGTTGTAG
12 EXON 12 48211283 48211354 2 2 72
AGACCTGAGCAACAACCAGATCTCTGAACTTGCACCAGATGCCTTCCAAGGACTGCGCTC
TCTGAATTCACT
INTRON 12 - 13 48211355 48217451 6097
GTAAGTAGACACTTTTCCAGTGGGA..........TTCTCATTTTTATATAATTCCTTAG
13 EXON 13 48217452 48217523 2 2 72
TGTCCTGTATGGAAATAAAATCACAGAACTCCCAAAAAGTTTATTCGAAGGACTATTTTC
TTTGCAGCTACT
INTRON 13 - 14 48217524 48219661 2138
GTAAGTATTTGATTACTGTGAATCT..........ATTTTGTGACTGTTTGATCAAACAG
14 EXON 14 48219662 48219805 2 2 144
ATTATTGAATGCCAACAAGATAAACTGCCTTCGGGTAGATGCTTTTCAGGACCTGCACAA
CTTGAACCTTCTCTCCTTATATGACAATAAGCTTCAGACGGTTGCCAAGGGCACCTTCTC
AGCCCTCAGAGCCATCCAAACTAT
INTRON 14 - 15 48219806 48219916 111
GTATGTATGCAAAATTTGGACAGGG..........AACTCTTCTGCTGTGTTTCTGAAAG
15 EXON 15 48219917 48220080 2 1 164
GCATTTGGCCCAGAATCCTTTCATTTGTGACTGCCATCTCAAGTGGCTAGCGGATTATCT
CCACACCAACCCAATTGAGACCAGCGGTGCCCGTTGCACCAGCCCCCGCCGCCTGGCAAA
CAAAAGAATTGGACAGATCAAAAGCAAGAAATTCCGTTGTTCAG
INTRON 15 - 16 48220081 48220966 886
GTAATTTCTCACTTCATGAGACATT..........CTCTTTGTTTTTTTTTTTTATTTAG
16 EXON 16 48220967 48220990 1 1 24
CTAAAGAACAGTATTTCATTCCAG
INTRON 16 - 17 48220991 48224652 3662
GTAGGTTTTGCTCGGTGGTAGGACT..........TATGTTTGGCTTGAATCCTCAATAG
17 EXON 17 48224653 48224803 1 2 151
GTACAGAAGATTATCGATCAAAATTAAGTGGAGACTGCTTTGCAGACTTGGCTTGTCCTG
AGAAGTGTCGCTGTGAAGGGACCACAGTAGACTGCTCCAATCAAAGACTCAACAAAATCC
CAGAGCATATTCCCCAGTACACAGCAGAGCT
INTRON 17 - 18 48224804 48230259 5456
GTAAGTTAATCTGACCACAAAATCC..........TTTCTTTCTTGCTGTGTTTCCTCAG
18 EXON 18 48230260 48230334 2 2 75
GCGTCTCAATAATAATGAATTCACAGTGTTAGAAGCCACGGGAATATTTAAGAAACTTCC
TCAGTTACGTAAAAT
INTRON 18 - 19 48230335 48231911 1577
GTAAGTCATTTGCTAGCTACATGCT..........CTGTGCTTTACCACTCTCTATCTAG
19 EXON 19 48231912 48232055 2 2 144
CAACTTTAGCAACAATAAGATCACGGATATCGAGGAGGGTGCATTTGAAGGCGCGTCTGG
TGTGAATGAAATTCTTCTCACCAGTAACCGTTTGGAAAATGTTCAGCATAAGATGTTCAA
AGGACTGGAGAGCCTCAAAACATT
INTRON 19 - 20 48232056 48235337 3282
GTAAGTATTTCTGGCTCACATTAAA..........AACAATGTCTTTTTCCTTCCCCCAG
20 EXON 20 48235338 48235481 2 2 144
GATGCTGAGAAGTAATCGAATAAGCTGTGTTGGGAACGACAGTTTCATAGGACTCGGCTC
TGTGCGTCTGCTCTCTTTATATGACAATCAAATTACCACAGTGGCACCAGGAGCATTTGA
TTCTCTCCATTCATTATCCACTCT
INTRON 20 - 21 48235482 48237255 1774
GTAAGCAGAAAAGCATTGCCTTCAT..........TGCTTTGTTTACATGTGGTGCTTAG
21 EXON 21 48237256 48237422 2 1 167
AAACCTCTTGGCCAATCCTTTCAACTGTAACTGTCACCTGGCATGGCTGGGAGAATGGCT
CAGAAGGAAAAGAATTGTAACAGGAAATCCTCGATGCCAAAAACCCTACTTCCTGAAGGA
AATCCCAATCCAGGATGTAGCCATTCAGGACTTCACCTGTGATGATG
INTRON 21 - 22 48237423 48238375 953
GTAAGAAATGCATGACCAATCATGG..........TCTGTGTTTTTCTGTGGTGATCTAG
22 EXON 22 48238376 48238508 1 2 133
GAAATGATGACAATAGTTGCTCTCCACTCTCCCGTTGTCCTTCTGAATGTACCTGCTTGG
ATACAGTGGTACGATGTAGCAACAAGGGCTTGAAGGTTTTGCCTAAAGGTATTCCAAAAG
ATGTCACAGAGCT
INTRON 22 - 23 48238509 48242548 4040
GTAAGTACAGTTTGTCCTCCTTGTT..........GACCTTGTTCTGTCCTTGTTTCTAG
23 EXON 23 48242549 48242617 2 2 69
GTATCTGGATGGGAACCAGTTTACGCTGGTCCCGAAGGAACTCTCTAACTACAAACATTT
AACACTTAT
INTRON 23 - 24 48242618 48244627 2010
GTGAGTAGAATATCTTCACATCATT..........CGATGTCTTCACTTTTCTCTTTCAG
24 EXON 24 48244628 48244699 2 2 72
AGACTTAAGTAACAACCGAATAAGCACCCTTTCCAATCAAAGCTTCAGCAACATGACCCA
GCTTCTCACCTT
INTRON 24 - 25 48244700 48245576 877
GTAAGTGTGGTACTGAATATTCACT..........TGAGCTGACACATGTTTATTTACAG
25 EXON 25 48245577 48245648 2 2 72
AATCCTCAGTTACAACCGTCTGAGATGTATCCCTCCACGAACCTTTGATGGATTGAAGTC
TCTTCGGTTACT
INTRON 25 - 26 48245649 48247149 1501
GTAAGCATCCTGTATTCAACAATCA..........ATGCTTTGAACTTTTTCTCTTTTAG
26 EXON 26 48247150 48247221 2 2 72
GTCTTTACATGGAAATGACATTTCTGTTGTGCCTGAAGGTGCCTTCAATGACTTGTCAGC
CTTGTCACACTT
INTRON 26 - 27 48247222 48249777 2556
GTGAGTACCTGGCTCAAGGATGCAG..........TGCTTTTGTGGTGTTCTTTTTCCAG
27 EXON 27 48249778 48249941 2 1 164
AGCGATTGGAGCCAACCCTCTTTACTGTGATTGTAACATGCAGTGGTTATCCGACTGGGT
GAAGTCGGAATATAAGGAACCTGGAATTGCACGCTGTGCCGGCCCTGGAGAAATGGCAGA
TAAATTATTACTCACTACTCCCTCCAAAAAATTTACATGTCAAG
INTRON 27 - 28 48249942 48256756 6815
GTATGGCTTTTAATTATTGGTACTA..........CTTATATCTTACTGTTGATTTGTAG
28 EXON 28 48256757 48256881 1 0 125
GTCCCGTGGATATCACTATTCAAGCCAAGTGTAATCCCTGCTTATCAAATCCATGTAAAA
ATGATGGCACCTGTAACAATGACCCCGTTGATTTTTATCGATGTACCTGCCCATATGGAT
TCAAG
INTRON 28 - 29 48256882 48257005 124
GTAAGTAGAGACCATAGTGGGAAGA..........ATTAACATGGGTGTTTCTTCTCTAG
29 EXON 29 48257006 48257103 0 2 98
GGTCAGGACTGTGATGTCCCCATTCATGCTTGTATCAGTAATCCATGTAAACATGGAGGA
ACTTGTCACTTAAAGGAAGGAGAGAATGCTGGCTTCTG
INTRON 29 - 30 48257104 48259543 2440
GTAAGTACCCTGGCTGTGAGGTCCT..........CTTGCCTTTCTTTCCCTATGTTCAG
30 EXON 30 48259544 48259683 2 1 140
GTGCACTTGTGCTGATGGGTTTGAAGGAGAAAACTGTGAAGTCAATATTGATGATTGTGA
AGATAATGATTGTGAAAATAATTCTACATGCGTTGATGGAATTAACAACTACACATGTCT
TTGCCCACCGGAATACACAG
INTRON 30 - 31 48259684 48263640 3957
GTATGAAGAAGAGGAACTGTGTCAT..........TCTCTTCTGTCTTTGTCGCTGCCAG
31 EXON 31 48263641 48263667 1 1 27
CTGCTAATCTGAATGAGGTGGAAAAAG
INTRON 31 - 32 48263668 48275581 11914
GTTAGTTGCTCTTTTTAAGTCTATT..........ACTAACACTACTTGCCCTATTGCAG
32 EXON 32 48275582 48275675 1 2 94
GTGAACTGTGTGAGGAAAAGCTGGACTTCTGTGCACAAGACTTGAATCCCTGCCAGCATG
ACTCCAAGTGCATCCTGACTCCAAAGGGATTCAA
INTRON 32 - 33 48275676 48281716 6041
GTAAGTCCAAGGCCAGTTGGGGCTC..........AACTTTTACCTCCTTGTTTAAACAG
33 EXON 33 48281717 48281854 2 2 138
GTGTGACTGCACTCCAGGATACATTGGTGAGCACTGTGAGATTGACTTTGATGACTGCCA
AGATAACAAGTGTAAAAACGGTGCTCACTGCACAGATGCCGTGAACGGATACACGTGCGT
CTGTCCTGAAGGCTACAG
INTRON 33 - 34 48281855 48281944 90
GTGAGAACATGAGAGCACGCTGTGT..........CCTAATGTTTCTTTGTGTTTGTCAG
34 EXON 34 48281945 48282185 2 0 241
TGGCTTGTTCTGTGAGTTTTCTCCACCCATGGTCCTCCCTCGCACCAGCCCCTGTGATAA
TTTTGATTGCCAGAATGGAGCCCAGTGTATCATCAGGATAAATGAACCAATATGCCAGTG
TTTGCCTGGCTACCTGGGAGAGAAGTGTGAGAAATTGGTCAGTGTGAATTTTGTAAACAA
AGAGTCCTATCTTCAGATTCCTTCAGCCAAGGTTCGGCCTCAGACAAACATCACACTTCA
G
INTRON 34 - 35 48282186 48283387 1202
GTGAGAGATCTCCCCGCTCCCACCG..........TAACATCAGGGCTACCTCCTACTAG
35 EXON 35 48283388 48283518 0 2 131
ATTGCCACAGATGAAGACAGCGGCATCCTCTTGTATAAAGGTGACAAAGACCACATTGCC
GTGGAACTCTATCGAGGGCGAGTTCGAGCCAGCTATGACACCGGCTCTCATCCGGCTTCT
GCCATTTACAG
INTRON 35 - 36 48283519 48296408 12890
GTGAAGATCTGTCAATTACTGGTAA..........TTTTTTCTTTCTCCTCCCAATGCAG
36 EXON 36 48296409 48296563 2 1 155
TGTGGAGACAATCAATGATGGAAACTTCCACATTGTGGAGCTACTGACCCTGGATTCCAG
TCTTTCCCTCTCTGTGGATGGAGGAAGCCCTAAAGTCATCACCAATTTGTCAAAACAATC
TACTCTGAATTTCGACTCTCCACTCTATGTAGGAG
INTRON 36 - 37 48296564 48302265 5702
GTGAACTTCCTTCCAAATCCAGTGG..........TAACTGACATGCTGTTTCTTTCTAG
37 EXON 37 48302266 48302554 1 2 289
GCATGCCTGGGAAAAATAACGTGGCATCCCTGCGCCAGGCCCCTGGGCAAAATGGCACCA
GCTTCCATGGCTGTATCCGGAACCTTTACATTAACAGTGAGCTGCAGGACTTCCGGAAAG
TGCCTATGCAAACCGGAATTCTGCCTGGCTGTGAACCATGCCACAAGAAAGTATGTGCCC
ATGGCATGTGCCAGCCCAGCAGCCAATCAGGCTTCACCTGTGAATGTGAGGAAGGGTGGA
TGGGGCCCCTCTGTGACCAGAGAACCAATGATCCCTGCCTCGGAAACAA
INTRON 37 - 38 48302555 48302752 198
GTGAGTTCCAGTTGCTTGGTACTGA..........CCCCTCTGTTTCTCCTTGCCTGAAG
38 EXON 38 48302753 48302964 2 1 212
ATGTGTGCATGGGACCTGCCTGCCCATCAATGCCTTCTCCTACAGTTGCAAGTGCCTGGA
GGGCCATGGAGGTGTCCTCTGTGATGAAGAAGAAGATCTCTTTAACCCCTGCCAGATGAT
CAAGTGCAAGCATGGGAAGTGCAGGCTTTCTGGAGTGGGCCAGCCCTATTGTGAATGCAA
CAGTGGATTCACCGGGGACAGCTGTGATAGAG
INTRON 38 - 39 48302965 48303999 1035
GTAAGTTAGGCACCTGCTCTTCTGC..........CTATGCTCTTGTTTTTCTTTTCTAG
39 EXON 39 48304000 48305511 1 - 1512
AAATTTCTTGTCGAGGGGAACGGATAAGGGACTATTACCAGAAGCAGCAGGGTTACGCTG
CCTGTCAAACAACTAAGAAAGTATCTCGCTTGGAATGCAGAGGCGGGTGCGCTGGAGGCC
AGTGCTGTGGACCTCTGAGAAGCAAGAGGCGGAAATACTCTTTCGAATGCACAGATGGCT
CCTCATTTGTGGACGAGGTTGAGAAAGTGGTGAAGTGCGGCTGCGCGAGATGTGCCTCCT
AAGCGCGTCTCTAGAAGCTTCTAGCTTCGGCGAAGGTTGTACACTTCTTGACCATGTTGG
ACTAATTCATGCTTCATAATGGAAATATTTGAAATATATTGTAAAATACAGAACAGACTT
ATTTTTATTATGATAATAAAGACTTGTCTGCATTTGGAAAAAAATAATAATAAAAGCCAC
GCTTGTACTAAAGCTCCCCCTACACTGGAGAAGTGTGGAGAAAAGCCACACTTGGAGGCA
TTAGTGAAGCGGTGGGGACCATTGCAACACGGAGCCATCTTTGGAACACGCCAATACTAG
CCGAAGCACATCTACAAGAGCCTGACATGGGACTGTACGCTCATATGCGCTTGCCTAGAG
CATCAAACCCGTGACCCCCTTCACATCAGTTCCCAAGGACACATCGAGCACAAGTGTGTG
AGTGAGACTGAGAGGTAGATGAATGGGAATCTAGAATCTGTAGATAGGTCCAAGGGATGA
GATATATTTTGTGCAAGATCTAAAGTGTCCTGACATCTGGGTTTCATTCCGAAAGAAATG
GGTGTGGAGTGCTGTGATGTATTTTATTGTCTTTGGCAATGACAGTGCATAGGCAGAAAC
AGCACACGAAGGTGTTTAGCTACCAGTTTCCAGTATTAAATTTTTTGTAATATAAATGAC
AAAGGAGATGATAAAGAACCAATAGATTATTGATAAATAAAAATTAGTAATAATATGAAT
TTTTGTTTCTATGAGTTCTAAATATCCCTATACAGTATTCATTTTCAATGAGGAATATTT
ATTGTATTAAAGTACATTTTACTTAACGATTTAGATCATCATTTTGGACTGTTTCTTGAT
GCTTTAATATATATTAATTTATAATTATCCTGATATTTTTGTACATTTTCAAACTTTAAA
AAAAAATCAGGATTTTTTTGGCAATAGTACTAACATAGGATGTTATTTTGTTATCTCGGG
ATAAGTATATGTTGTTCTGTTGGCTGACCTTGATGTCTGACCATTGATGCCACTGAACTG
TGGCCTCCTTCAGGACACTTGCAGAAGGTTTGCAAAGTCTCAGAGTAGAAACAGCAAGTG
AATCTATCTGCCACATGTCCTCACAAGAAGAAAGAACTTATCTGTAGCAATGGCCAGTAA
GAAGTAGATGTTTTACAAATTAATTAATAAACATTTCCCTGCCATGCTTTGTTGGGGAGG
GTGGGAGAAGAAAGACTGTTATGTCAAAAATTGTAATTTCTTTCCAAACAATAAAATTCC
TTTATTACCATA
3' upstream sequence
TTGCTCCCACGTTAACCTGTTTGCTGCTAAATTACAATGTAGAGTTGATAATGATTTATA
GTGAACTGTGCTCTTCTTTCAGTAAAACCCCAGGGTCCCCTGTGAGGATGCAAATGTTTC
TTTAAACAAAGAAAAAAAGAAAGAAAGAAAAACACTTTTAACAATGAAAATTAGATGTAC
ATGTGTGATTCGGTATGCTTTGCCTTCTCCAGCCTAATACCAGTTACACTACTGTTTGTA
AATGAAAAGATATCTTCTTCATTAACGGTTTGGCCCTTTTCTTAGAAACTGCAGGTGTTC
CTTTATGAACTTGACCCAGTGACATGAAATGAACTGGAAAAGGCAACCTGCACCTTTAAT
TTACCAGAAATTGCTTTGAAATTAATATATTGTCACATCTAGAGACCTCATAAATGAGAT
AGAATAAACTATTCTTTACTAGGACAAGTGCATATTAAATAAAATTATCCCAACCAAAAG
AAGTATAAGATGAAATAGAGATAACACAGGGAGTCTTCTTTGAGCCTCACTGCCTTAGCT
TGAACCAGCAGTCCAGGACTAGCAACCATTCGGGTTAAGGAAGTGCCATTGTCAGGATAG
AATATTAATATTTGGCTTCTACTCTTTTTAAGAACATTGTGCCTATACATATACACATAC
ACAGATATATACACTATCTTCCAGGTATGAACAGCCAATCATTTATTCATTCTTGTTTAA
AATGACTTCAGTTGTATTATATAAATATTAAATTACCATGATAAAACATTCATTCATGTG
TTCCTACGAATTGCTGCTTTTATCAGAGGTATTGAAAAGGACTCATCTGCAAATATACCA
ATGGCTAGTGTTTGTGGATTGCTTATTGCACAGCAAGAGCTATGCTATAAGTTTTATAGG
TAAACTCTCCATCTATATAAATGAATGGAATTCCTGTGTCTCCTAGTTTAATCAGGTATA
CAAGGCTGGAAATTTAAAGAGCAGTATCTGGCAGTTTATA..........

Sequence Detail Report

Gene Symbol (Gene ID) Slit2 (ENSMUSG00000031558)
Transcript ID ENSMUST00000174421
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1543 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information