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Target CDS Information

Gene Symbol (Gene ID) Kcnb2 (ENSMUSG00000092083)
Cross Reference
CCDS CCDS48222.1
EMBL AC126049, AC132603, AC137555, ...show all
GO GO:0005251, GO:0005622, GO:0005886, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Kcnb2-002
OTTP OTTMUSP00000068035
OTTT OTTMUST00000125547
protein_id AAI46610.1
Reactome R-MMU-112316, R-MMU-1296071, R-MMU-1296072
RefSeq_peptide_predicted XP_006495658.1
UCSC uc007aje.1
UniParc UPI00001E2D9F
Uniprot/SWISSPROT A6H8H5
Vega_transcript Kcnb2-002, OTTMUST00000125547
Vega_translation 178749, OTTMUSP00000068035
Definition protein_id:ENSMUSP00000135382
translation:
MAEKAPPGLNRKTSRSTLSLPPEPVDIIRSKTCSRRVKINVGGLNHEVLWRTLDRLPRTR
LGKLRDCNTHESLLEVCDDYNLNENEYFFDRHPGAFTSILNFYRTGKLHMMEEMCALSFG
QELDYWGIDEIYLESCCQARYHQKKEQMNEELRREAETMREREGEEFDNTCCPEKRKKLW
DLLEKPNSSVAAKILAIVSILFIVLSTIALSLNTLPELQENDEFGQPSDNRKLAHVEAVC
IAWFTMEYLLRFLSSPNKWKFFKGPLNVIDLLAILPYYVTIFLTESNKSVLQFQNVRRVV
QIFRIMRILRILKLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEKDE
DATKFTSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIVNNF
SEFYKEQKRQEKAIKRREALERAKRNGSIVSMNLKDAFARSMELIDVAVEKAGESANTKD
SVDDNHLSPSRWKWARKALSETSSNKSYENKYQEVSQNDSHEHLNNTSSSSPQHLSAQKL
EMLYNEITKTQPHSHPNPDCQEQPERPCVYEEEIEMEEVICPQEQLAVAQTEVIVDMKST
SSIDSFTSCATDFTETERSPLPPPSASHLQMKFPTDLPGTDEHQRARAPPFLTLSRDKGP
AAREAAVDYAPIDITVNLDAGASHGPLQPDSASDSPKSSLKGSNPLKSRSLKVNFQENRA
SAPQTPPSTARPLPVTTADFPLTTPQHMSTILLEEALPQGQPPLLEADDSAHCQGPSKGF
SPRFPKQKLFPFSSRERRSFTEIDTGEDEDFLDLQRSRPDKQADPSPNCLADKPGDARDS
LREEGCVGSSSPQNTDHNCRQDIYQAVGEVKKDSSQEGYKMENHLFAPEIHSNPGDTGHC
PTRETSM

Chromosome 1
Length
Position(start - end)
399176
15312452 - 15711629
Orient to Chromosome plus
Link Location : (1:15312452-15711629)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kcnb2 (ENSMUSG00000092083)
Transcript ID ENSMUST00000175681
Reports
substitution
cSNPs13
Insertion225
Deletion266
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num11
non-synonymous num2
synonymous substitutions 15312493 (p.Ser14Ser), 15312682 (p.Cys77Cys), 15312799 (p.Ala116Ala), 15312820 (p.Leu123Leu), 15709760 (p.Glu285Glu), 15710072 (p.Pro389Pro), 15710093 (p.Ile396Ile), 15710114 (p.Ile403Ile), 15710411 (p.Thr502Thr), 15710750 (p.Glu615Glu), 15711393 (p.Leu830Leu),
non-synonymous substitutions 15710459 (p.Asn518Lys), 15710985 (p.Asp694Asn),
B6 transcript
(ENSMUST00000175681)
MAEKAPPGLNRKTSRSTLSLPPEPVDIIRSKTCSRRVKINVGGLNHEVLWRTLDRLPRTR
LGKLRDCNTHESLLEVCDDYNLNENEYFFDRHPGAFTSILNFYRTGKLHMMEEMCALSFG
QELDYWGIDEIYLESCCQARYHQKKEQMNEELRREAETMREREGEEFDNTCCPEKRKKLW
DLLEKPNSSVAAKILAIVSILFIVLSTIALSLNTLPELQENDEFGQPSDNRKLAHVEAVC
IAWFTMEYLLRFLSSPNKWKFFKGPLNVIDLLAILPYYVTIFLTESNKSVLQFQNVRRVV
QIFRIMRILRILKLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEKDE
DATKFTSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIVNNF
SEFYKEQKRQEKAIKRREALERAKRNGSIVSMNLKDAFARSMELIDVAVEKAGESANTKD
SVDDNHLSPSRWKWARKALSETSSNKSYENKYQEVSQNDSHEHLNNTSSSSPQHLSAQKL
EMLYNEITKTQPHSHPNPDCQEQPERPCVYEEEIEMEEVICPQEQLAVAQTEVIVDMKST
SSIDSFTSCATDFTETERSPLPPPSASHLQMKFPTDLPGTDEHQRARAPPFLTLSRDKGP
AAREAAVDYAPIDITVNLDAGASHGPLQPDSASDSPKSSLKGSNPLKSRSLKVNFQENRA
SAPQTPPSTARPLPVTTADFPLTTPQHMSTILLEEALPQGQPPLLEADDSAHCQGPSKGF
SPRFPKQKLFPFSSRERRSFTEIDTGEDEDFLDLQRSRPDKQADPSPNCLADKPGDARDS
LREEGCVGSSSPQNTDHNCRQDIYQAVGEVKKDSSQEGYKMENHLFAPEIHSNPGDTGHC
PTRETSM*
MSMv4 transcript
MAEKAPPGLNRKTSRSTLSLPPEPVDIIRSKTCSRRVKINVGGLNHEVLWRTLDRLPRTR
LGKLRDCNTHESLLEVCDDYNLNENEYFFDRHPGAFTSILNFYRTGKLHMMEEMCALSFG
QELDYWGIDEIYLESCCQARYHQKKEQMNEELRREAETMREREGEEFDNTCCPEKRKKLW
DLLEKPNSSVAAKILAIVSILFIVLSTIALSLNTLPELQENDEFGQPSDNRKLAHVEAVC
IAWFTMEYLLRFLSSPNKWKFFKGPLNVIDLLAILPYYVTIFLTESNKSVLQFQNVRRVV
QIFRIMRILRILKLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEKDE
DATKFTSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIVNNF
SEFYKEQKRQEKAIKRREALERAKRNGSIVSMNLKDAFARSMELIDVAVEKAGESANTKD
SVDDNHLSPSRWKWARKALSETSSNKSYENKYQEVSQKDSHEHLNNTSSSSPQHLSAQKL
EMLYNEITKTQPHSHPNPDCQEQPERPCVYEEEIEMEEVICPQEQLAVAQTEVIVDMKST
SSIDSFTSCATDFTETERSPLPPPSASHLQMKFPTDLPGTDEHQRARAPPFLTLSRDKGP
AAREAAVDYAPIDITVNLDAGASHGPLQPDSASNSPKSSLKGSNPLKSRSLKVNFQENRA
SAPQTPPSTARPLPVTTADFPLTTPQHMSTILLEEALPQGQPPLLEADDSAHCQGPSKGF
SPRFPKQKLFPFSSRERRSFTEIDTGEDEDFLDLQRSRPDKQADPSPNCLADKPGDARDS
LREEGCVGSSSPQNTDHNCRQDIYQAVGEVKKDSSQEGYKMENHLFAPEIHSNPGDTGHC
PTRETSM*
homology99.78 (908 / 908)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kcnb2 (ENSMUSG00000092083)
Transcript ID ENSMUST00000175681
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AACTTCTTTTGTGGGAAAATACTCCGTGGCCCATCCTCAGGAGCCATATG
TCCTTGTCCCAGTTCCCCATGGTGGAACAAGGAGCATTGGTTCTGGTCGCTTAGGGGTCT
GGCAGCAGGAGAGCACAGCAGATGGAAGAGAAAGGCCAGGAAATCCATGAAGCTGCGGGA
GCATCTCGACGTGCTTACCAGGGCTTCCCCGGCCGCGTGTGTGGGGTGGCCGCCGGGCTG
TGGACCCCTTGCCTAGTGTGTCCGTGTGCACGCCACCAAGAGAGACAGGTGGGTGTGGAG
CCCGGACCCAGGCAGCCGCAGGAGCCTAGGGAGGATCGGGCGAGGTGTGGGCGGCGCCCG
ACCGTCCGCGCCCGGGCCGCACCCTGGGCACCGGGGGCGCTGTCTCCTGCCGAGCTCAGG
CGCCGGGAGGCCGAGCCTGGCGTTTCCCAGGAGGTGCCGGGCCAGCGGTGCATCCCCGCC
ACCCACCCCCGGGAGCTGCGATTGCCTGGGAGTCGCTGGAGGAGGAGAAACAGAGAGAGG
CGCTGGCGGCCGCTCTGCCCGCGGGTGCGCGGAGCGCGGAAGGCGGAGCGCGAGGCTGGG
TGGCCGCGGGCGTGTGTGCGCGCCTGGCCGGAGAGCTACGGGGCGGGGGACCCGCGCCCG
GAGCGCCCCGCCTGGTTTTTCGCGCGGAGCCAGCGTCGCTGCTGCACAGACACACACCCA
CCGAGCTCCACCGAGTGCCCCTGAGCACCCGCCGCCCCCGCTGGCCACAGCCGCTCCTCC
GGCAGCGGGATCCAGCGCCAAGTCCAGGGCTGGTGCGGCGCGCAGAGAACCTCTTGATTT
TTTTCCCCCCTTCACTCCAGCCCTCTCTGGTCTGGGCGGCGGCGGCGGCGACAGGGGGAT
GGGGGCTCCACGCGGGGAAAGGCGGGTGACGATCGAGGAAGATTATTGTTCTTTTTAAAG
GATGCCTTCGCTTCTTACCAATGCGGCTTCTGTGAGCCCTTTTACTAGAG
1 EXON 1 15287254 15287484 - - 231
ACTGCGAACCGGAGTGAGATATGTAAAGAAGGAAGGAAAGCTGCCTGGAGCTCCAGCCAG
CCGGGCAGACCCTCCTCTCTGTGGAGGGGAGGGGGATTTCCAACGACACATCATTGGCAA
AAGGGACCTTTGCAAGAGAGGAGTCCTCTGAGGGAGCAGGGAATCCCACAGCCCCCTGTG
GCACAGGAGCCAGAGCTGCTGGCTGAGCAGAGCTGGGTCCGTGGGAGCTAG
INTRON 1 - 2 15287485 15312362 24878
GTAAGTGACCTGGGCATTGCAGCTC..........ACTTTCTTGTTTTTTTTTTTTCCAG
2 EXON 2 15312363 15313030 - 0 668
CTGATGTGGCGATGCCTATTCCAGAGGAATCCTGCTTCAGGTGACTTCCTTTCTAAGGAC
TCTAGCTCTGTGGCTCTGTCCAGTTCAAAATGGCAGAAAAGGCACCACCTGGCTTGAACA
GAAAGACATCTAGGTCAACACTTTCTCTTCCTCCAGAACCTGTGGACATTATCCGAAGCA
AAACATGCTCTCGGAGAGTTAAGATCAACGTAGGGGGCCTTAACCACGAAGTCCTGTGGA
GAACTCTGGACAGGCTTCCCCGGACACGCCTGGGGAAGCTCCGCGACTGTAACACTCACG
AGAGTCTCCTGGAGGTGTGTGATGACTACAACCTTAACGAGAATGAGTATTTCTTCGACC
GACATCCTGGAGCCTTTACATCTATTCTAAACTTCTACCGGACGGGGAAGCTCCACATGA
TGGAGGAAATGTGTGCACTCTCTTTTGGCCAAGAGCTTGATTATTGGGGCATCGATGAGA
TCTACCTAGAGTCCTGCTGCCAAGCCAGATACCATCAGAAGAAAGAGCAGATGAACGAAG
AACTGAGGAGGGAGGCGGAGACCATGCGTGAGCGTGAGGGTGAGGAGTTTGATAACACCT
GCTGCCCGGAGAAACGGAAGAAACTTTGGGACTTGCTGGAGAAACCTAACTCGTCCGTGG
CTGCAAAG
INTRON 2 - 3 15313031 15709484 396454
GTATGAACACATGGTGCTGAATCAT..........ACATGGACCTCCTTCTCCTTTCCAG
3 EXON 3 15709485 15712548 0 - 3064
ATCCTGGCCATCGTGTCTATCCTGTTCATCGTTCTTTCCACCATTGCTCTGTCTCTCAAC
ACACTTCCAGAGCTGCAAGAAAACGACGAGTTTGGGCAACCCAGTGACAACCGGAAGTTG
GCACACGTAGAGGCTGTGTGCATTGCCTGGTTTACCATGGAGTATCTTTTACGATTCCTG
TCCTCACCGAATAAATGGAAATTCTTTAAAGGCCCGCTGAATGTCATTGACCTTCTGGCC
ATCTTGCCATACTATGTAACCATCTTCCTCACCGAATCTAACAAAAGTGTGCTGCAGTTC
CAGAATGTTAGACGAGTGGTCCAGATCTTCAGAATCATGCGTATCCTCAGGATACTGAAA
CTCGCCAGACACTCAACGGGCCTGCAGTCTCTGGGCTTCACACTCAGGCGAAGTTACAAT
GAGTTAGGTTTATTAATATTATTTCTGGCCATGGGGATAATGATATTTTCCAGCTTGGTG
TTTTTTGCTGAGAAAGATGAAGATGCTACCAAATTCACCAGTATCCCTGCATCATTTTGG
TGGGCTACCATCACCATGACCACTGTGGGCTACGGTGACATTTACCCAAAAACACTGTTA
GGAAAAATCGTGGGTGGTCTCTGCTGCATCGCAGGAGTCCTGGTTATTGCCCTTCCTATA
CCCATCATTGTGAACAATTTCTCTGAGTTCTATAAGGAGCAAAAACGCCAGGAGAAAGCT
ATTAAAAGGAGAGAGGCTCTTGAAAGAGCCAAAAGAAATGGCAGCATCGTTTCTATGAAC
TTAAAGGATGCCTTTGCTAGAAGTATGGAACTGATAGACGTGGCTGTGGAGAAGGCTGGA
GAGTCAGCCAATACCAAGGACTCAGTAGATGATAATCACCTGTCTCCAAGCCGGTGGAAG
TGGGCCAGGAAGGCGCTGTCAGAAACAAGCTCCAACAAATCTTACGAGAATAAGTACCAG
GAGGTTAGCCAAAAAGACTCCCACGAACATCTGAACAATACTTCTTCCTCCAGCCCACAG
CATCTGAGTGCCCAGAAGCTGGAGATGCTATACAATGAAATCACCAAGACACAGCCTCAT
TCCCACCCGAATCCAGACTGCCAAGAACAGCCTGAGAGGCCATGTGTGTATGAGGAGGAG
ATAGAAATGGAAGAGGTGATCTGCCCACAGGAGCAGCTGGCTGTGGCACAGACCGAGGTC
ATCGTGGACATGAAGAGCACCTCCAGCATTGACAGCTTCACCAGCTGTGCCACGGACTTC
ACAGAAACTGAGAGATCACCCCTGCCACCACCCTCTGCCTCTCATTTGCAGATGAAGTTC
CCCACGGACCTCCCAGGAACAGATGAGCACCAAAGAGCCAGGGCACCTCCATTCCTTACA
CTAAGCAGAGATAAGGGGCCTGCTGCCAGGGAGGCTGCAGTGGATTATGCCCCAATTGAC
ATAACCGTGAACCTCGATGCTGGGGCTTCCCATGGTCCCTTGCAACCTGACAGTGCCAGC
AACAGCCCTAAGAGCTCGCTGAAAGGGAGCAATCCCCTCAAGTCAAGATCCCTCAAAGTG
AACTTTCAGGAAAACAGAGCCAGTGCACCACAGACCCCGCCCAGCACAGCCAGGCCACTG
CCAGTAACCACAGCTGACTTTCCGCTCACCACTCCCCAGCACATGAGTACCATTCTTCTA
GAAGAAGCCCTCCCCCAGGGACAGCCTCCCTTGCTGGAGGCTGATGATTCGGCACACTGT
CAGGGACCATCCAAAGGTTTCTCCCCACGATTTCCCAAGCAAAAACTGTTTCCTTTCTCT
TCTAGAGAAAGGAGGAGCTTCACTGAAATAGACACTGGAGAAGACGAAGACTTCTTGGAC
CTCCAAAGGTCAAGACCAGACAAGCAAGCAGATCCCAGCCCCAACTGCTTAGCAGATAAG
CCTGGCGATGCCAGAGACTCTTTAAGAGAAGAGGGCTGTGTGGGTTCCTCCTCTCCCCAG
AACACAGACCACAACTGTAGGCAAGACATTTACCAGGCTGTGGGTGAAGTCAAAAAGGAC
AGTAGTCAAGAAGGTTACAAGATGGAGAACCACTTGTTTGCCCCAGAAATTCATTCCAAC
CCAGGAGACACAGGTCACTGTCCCACTCGTGAGACCAGCATGTGACAAAAGCAATAAAAG
AAAAAGAAAAAAAAACTGTTTCTTAAAAATGCGATTAATAATGCCGTGAACTAAAATTTG
AGAAACCCCTCCCCCTAATACCAGTGCATAAAATATTATTTTTTGCATGGCATGAACAGT
ATAGTTTAAGTACTGTTTAAATAAAACCGAGTCCTGAATAGCGAGCAAATAAAGTGCTCT
CTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTCCAATAGCAGG
CAGGTTTTGGAGTTTCAACTCTTACCTCCCAGTGAACTTTAGAATTTGCACATGAAAGGA
TGAAATGTTGTTGCATGTGTTCATGCTTACGGGGAGAAAGGTGCTTTCAGCTTGCAAACT
TTGCATAACTTTGTAAATAGGCCTGGATGTAAATGTGCCTCAAACATGTGGACACGCCAT
TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGACTTCCTG
TTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGCATCTTGCTTTGGATTATAAAGCT
CTTAGGTTTGTTTAAAGGAATACAGTATTTTTATTTTTAGGATATAATTTGGAGGGTATA
TTTATATGTATTTTCACTTATTTGTGATACAGTTGACAGGGTATTTTTCTTTTCTTCTTT
TGCTTTGTTGTTGCAATTGTGATGTTCTTATAAATCATGGAAATTAGTAAGATTTAATGA
CCAGATATCAAGTATTTGGAATTTAAGCTTGAGCTTTTACCTATAAACTAAATATCATGT
CATAGATTATTACAGAAATTCAAGTTTACACAAAGCTGAAAATGTACAGAAAGTTCTATT
ATAAAATAAAACTTTTAATTGGTACTCCACATTCAGAAATCACCTTTAAAACAATGTGTG
CTTC
3' upstream sequence
AGCACTCCAAACATGGATCTGCTGTCCAACATACAAATAAAGAGCTGCTAAAAATGGAGA
TTCCATAAAACGACTTTTAAGAAAATAAAAGTAGAACCCCCATAAGAGACAAAGCTGGTC
CCAGCATGAGATACCGTGCTAGGAGCCCCGGTCTGGGCCACTAGGGTAGAGACCTAGGAT
GACAGTACACGGTGCAGGAAAATGTCCTTGTAGACGTAAGTCCTTCCCAAGCATGGCCAG
AACACTCGGTAACTGCAGCAGCCCTACAAGCTTTCTCATGTTTCCAAGCCTGGAACTTTC
CTTGCTAAAAGTCATGCCAGGCATTTTCCTACTGAGAACACCAAATCCAGAGGCACTGGG
CACTGGGGGTTACCCTGCTCACCAGACTCACCTTGCTTTGTGGAAATCAAAGCTCCAGCT
ACTGATGAGAAGCTGCCGGCTGTGCAGTCTCCAGGATGTCTCCAACCTCGTGGGATCTCA
CGTGCATCCAAAGGGAAACAGTCCAAATTATTTCTAAGCCTCCTTAAGATCTCAAATTAA
TGATCTCTTAGTTTCCTGGCAATGCTCAGGTTTTGCGGCAGCAAAATGCATTTCGTGCAT
GTGTGTATATAGTTCAGGGAAATGGGGAAACTGCCAGCACAAACTACAAAGTGTATTGTT
TAAGGGGGGAAAAAATCTAAATTTTGTTCTTTATTCTTTAAAGGAAAAATGTTTACAAAA
ATAGCCCAAATATTTAGAATCTAATATAAGTCTTGAATATTTCTTAACAGGATCTGGTCA
TTAAATCTCAAATAAGGAAATGAATTTTGATTTTAGTTAAAATTCAGGCAGTCCTGATAT
TAAGAATAATTTGAAGTATTCTTTTGTCCCATTGTGCTTAGAATTTCTTAATGGTTTTTA
TGTTTGTTTCAAAACAAAACCTTTAAGAGTTTATACTCATTAATCATTGATATTTATATT
ATGCATACTTCTTTTTGTGTCTAAAAACTAAGTGTTGATC..........

Sequence Detail Report

Gene Symbol (Gene ID) Kcnb2 (ENSMUSG00000092083)
Transcript ID ENSMUST00000175681
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 908 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information