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Target CDS Information

Gene Symbol (Gene ID) Cers4 (ENSMUSG00000008206)
Cross Reference
EMBL AC164611
GO GO:0005783, GO:0016021, GO:0030148, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Cers4-006
OTTP OTTMUSP00000061301
OTTT OTTMUST00000110021
UniParc UPI00024677E1
Uniprot/SPTREMBL H3BKZ9
Vega_transcript Cers4-006, OTTMUST00000110021
Vega_translation 203255, OTTMUSP00000061301
Definition protein_id:ENSMUSP00000135594
translation:
MSFSLSEWLWQETYWLPPNVTWAELEDRDGLVFAHPHHVLAAFPVALVLVAVRIVF

Chromosome 8
Length
Position(start - end)
168
4515556 - 4515725
Orient to Chromosome plus
Link Location : (8:4515556-4515725)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cers4 (ENSMUSG00000008206)
Transcript ID ENSMUST00000176042
Reports
substitution
cSNPs0
Insertion15
Deletion17
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000176042)
MSFSLSEWLWQETYWLPPNVTWAELEDRDGLVFAHPHHVLAAFPVALVLVAVRIVF
MSMv4 transcript
MSFSLSEWLWQETYWLPPNVTWAELEDRDGLVFAHPHHVLAAFPVALVLVAVRIVF
homology100.00 (56 / 56)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cers4 (ENSMUSG00000008206)
Transcript ID ENSMUST00000176042
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CAGCCATCCAACTTTGGTTGTAACTTCCACTGAACATTTCTCCATGACCC
TTGTACACTCAAATCCTCCACTTCTCTGTGGACCTCTGGCTTGTATTTCCATGTCACTAT
CAAGATAAGTGGCTCCCATGGTCTAAGTGCTTGGGAATACCCTGTGTGACTTTCCTCTTT
CACATTGGCATCTGGTCTATATATCACCCTTGGCTTATCAAACTCAGGGACACCTGTATA
CTAGACAAGCAGTCTACCTTCTGAGCTAGGCTTGATGTCCTTATATTATATTCTCTTTTA
CAAAGATGACAAGTTATTAGAAGTCTCTTCTAACTGCTTGCCCTAGACTTGTCTTTCCTC
TGGTTGTACTAGGCAAGGAGAGGCCAACATCCTCCTGCATTATCCTAGGTCAAACAGTGG
AAACAGCTATCACCCACTCTGACTTGTATCTCAGCTTAATCTCTCAGATCTTGCCTGATC
TTTGCACCTCACAAAACCATAGCTGACATATTAATGTAATCTCCCTTCTCCTTTTCAATC
CTGTGGACAGCTTCTTGGTGGGCCCAGGCCCAGCAATCCTCTAGGTTGGTCTGACCGACT
CCAAGTACTGATGCCTTGGGGTGCTGAGGCCTGCAGAACGATCCAAGCTTCCTTTGCAGA
GCCTAGCAGTGCATCTGAGAAACAGAGTGCAGGCAGAAAGACAAGCCAGAGCACCACAAA
GAAGAGACCTAGAACTGGAAAACAAGATCCAGAGAGAGTGCCTAGTAGACGCTGCTGGGT
TAAAACGTCAGAGATATGCTCTGCAGAAACCTACAGCATGGCTGGAGAAAGGCCAGGTGC
CCACAACAGCCTCCGGTCGGGGCGGGGCCTGATAAGGCTGGACTGGGCTGGGGACCAGGC
CTTGCCAGTTAGAGGAAGAGGCTGAAAGCAGGGATTGGGGTGAGGAGTAGCAGACCAGAG
GTTGAGTGGAGTTGGGGGCGGGTCCTGGTGGCGGCGGCGGGTAGGGGGCT
1 EXON 1 4493140 4493169 - - 30
GTGGGCGGGGCCTGGAAACTGAAGGAGTTG
INTRON 1 - 2 4493170 4493404 235
GTAATAGTCTAGGGCGAGGCTGGAG..........AGCCACGCCCTTTTCCCCTGCTCAG
2 EXON 2 4493405 4493590 - - 186
ACCACGCCCAAGGCCCCATCACACTCCTCCCGGAGGCCCCCTCCGGTCCTATTTCCTCCC
TCGCGGGTGGAGGCTCTGTAGCGAGGAGTTTCTCGGCCCAGAGCGGTCTGCGGCTTGTCT
AAGGCATCTTCGGATTAGCTGATCTCCGCACCGCCTCGGCCTGCATCTTGCTTTCTGAAC
CTCCAG
INTRON 2 - 3 4493591 4515554 21964
GTAAGCAATCACCCCTCTCTGGGGG..........TGCTTACCTGATTGTGTATCCACAG
3 EXON 3 4515555 4515725 - - 171
CATGTCGTTCAGCTTGAGTGAGTGGCTGTGGCAGGAGACATACTGGTTACCACCCAATGT
CACATGGGCAGAGCTGGAGGACCGTGATGGCCTGGTGTTCGCCCACCCTCACCACGTGCT
TGCTGCCTTCCCAGTGGCTCTGGTCCTGGTGGCTGTGCGAATTGTCTTTGA
3' upstream sequence
GAGGTAAGTGCCATGATGTGGCCCTGCAGGGTGTATGCATGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTAGAGGTCAGAGGACATCAAGA
TGTCCTTTATCATTCTCTTAGTACCTTCAGATAGGTTCCCTGAGTGGCCCAGAGCTAGGT
TGGTGGGTTGCAAGCCCTAAGTGATCCTTCATCTCCCAACCTGCCAGAGAGATGAAGTTA
TAGGCAGGCATGTGGCCACACCCAGGCTTTTGCATGTGTGCTGGGAATTTGAACTCACTT
ACTCAATGCTTGTGTGGTAAAGACTCTTACTGAACCGTCTGCCCAGAGCCCTCATATACT
TCTTTTTTGAGGGCTTCTTCTCTGTCATCTAAGATGTATGTATGTCTTAACTCAATGCTT
GATGACAATATATGGCACGGTACTATTATTACTCCCATTTTACAGAAGGAAAAATGGAGA
CACACAAAGATTTAGTAACATGACTAAGAATATACAGTGTGTAAGATCAGCTGGGCCTGT
AGGAATTGTGGGAAGCTCAGTTCAGGTAGGCCTTAAGGAAGGGGTTGAGTTCCTTAAAGA
GCTGATGTTCAGTCTCCATCTGTGGTCTTGGGGCACCCTCCTGTGGGCAATGTGGGTAAC
TGATTAACCAGGTATCTGCTGCAGGAAGGATGGGAGGGAGGGAAAATCAGACTTAACAGG
TAGCATGCCTAGGCCCGCCCTTGAGTAACCTGATGCAGAGAGGTGAAGACCCAGGTCACC
AGGACACAGGTAGTGAGAAGACTTGATTTTGGTTGAATATGGGTGAAGGATCCTGGGTTC
CCAATGAACTGGTCTGAACATCTCTCTTCTGAAGACAAAGCTATAGAGTCTTTTCTTAGG
TTTGGTCTGATGCACTATACAGGTAATCCCTTTGGCCTTGAGGGATTAAGGCTGGGAGTA
GTGGCAGAAAATTCTGTCCTGCCCACGTGGGCATTTTGGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Cers4 (ENSMUSG00000008206)
Transcript ID ENSMUST00000176042
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 56 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information