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Target CDS Information

Gene Symbol (Gene ID) Ttll8 (ENSMUSG00000022388)
Cross Reference
GO GO:0042384
goslim_goa GO:0000902, GO:0008150, GO:0022607, ...show all
MGI_trans_name Ttll8-003
OTTP OTTMUSP00000061505
OTTT OTTMUST00000110300
UCSC uc007xet.2
UniParc UPI000246757A
Uniprot/SPTREMBL H3BJ58
Vega_transcript OTTMUST00000110300, Ttll8-003
Vega_translation 217535, OTTMUSP00000061505
Definition codon_start:3
protein_id:ENSMUSP00000134858
translation:
XPNPPFRPPSHTRVLRTPPLPPWVCLNSKSLSTGVGGQKNQLREASMENGERKKLSSTLS
DGDHKEENKLKQGIPQDLSSSPKLDRYKIARQLTEKAIKERKIFSIYGHYPVIRATLRRK
GWVEKKFNFFPKALQNLGSEDKSAETKENQEIALERFDDIHDVMVGKERDPIPPLDYQEG
CCGLPQPDL

Chromosome 15
Length
Position(start - end)
20177
88933881 - 88954059
Orient to Chromosome minus
Link Location : (15:88933881-88954059)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ttll8 (ENSMUSG00000022388)
Transcript ID ENSMUST00000177254
Reports
substitution
cSNPs1
Insertion33
Deletion31
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 88954040 (p.Arg6Arg),
non-synonymous substitutions
B6 transcript
(ENSMUST00000177254)
PNPPFRPPSHTRVLRTPPLPPWVCLNSKSLSTGVGGQKNQLREASMENGERKKLSSTLSD
GDHKEENKLKQGIPQDLSSSPKLDRYKIARQLTEKAIKERKIFSIYGHYPVIRATLRRKG
WVEKKFNFFPKALQNLGSEDKSAETKENQEIALERFDDIHDVMVGKERDPIPPLDYQEGC
CGLPQPDL*
MSMv4 transcript
PNPPFRPPSHTRVLRTPPLPPWVCLNSKSLSTGVGGQKNQLREASMENGERKKLSSTLSD
GDHKEENKLKQGIPQDLSSSPKLDRYKIARQLTEKAIKERKIFSIYGHYPVIRATLRRKG
WVEKKFNFFPKALQNLGSEDKSAETKENQEIALERFDDIHDVMVGKERDPIPPLDYQEGC
CGLPQPDL*
homology100.00 (189 / 189)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ttll8 (ENSMUSG00000022388)
Transcript ID ENSMUST00000177254
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCTGTGTGACCCTGACAGGTGCGTGGGAGATGTGGAGCAGGAGCACATGA
CCCAGGCGAGGGTCGCAGGCACTTAAGGACTAATCCTGACGCATGGCCTGCTCCGTCGGG
GGACCTAGTCCCCGCTCTCGCCCCCGACTCCACCCCCGTCCAAGCCGCTCCTTGGACCGT
AACATGGGACTGGATCTAGAACCAAAGCTCAGTGTGAGTGCCAGCAACTGCGTTCGGACT
GCGTCTCGGGTGTCCCCTGTGCTCCGCTGCTGCCAGCGGATTCCTCTTTCACGCAGCCCT
CCGCAGCCTCTGCCGCCTGTGCGTCCACGAAGCCCCACACCCCGAGTGGGGCGCCGCTTA
GCACGCCGAAAGCCCCGCTACCAGCGCCAGGAGTCTGCACAATGCATGGTGCAGGCGAGG
GCGGTTGCCCTGAGCAACCGCAAGACGCCTGGCCGCTCTGCCCGCCGCTCGGCCACAGCA
GCACGCGCTTTAGGGCGGGTCCCAGGTGAGCACTGCCTGCCCTCAGACGCGCCACGCCTG
CCCTCGCTAGTGCCCAGGTCCCCCTCCTACGCAGTACTCGGAACCCCGCCCCGCCCCCTC
CGATTGGAATCCCAGACGTCGATCCTTAGAATCACAGAACTTTCCCCCCTTATCCCTCCA
CTTTCACCCCACCACGCCTGTTCAACCTTCTTTCCCTCACCTCCCCACTTTCCTCCAAAC
TTCGTAACGGCCTCCCCTTTCTGACCCTAAGCCTGCGCCCCAATTTGTGTCCTGTCTCCC
TACCTCGACCTCTCCTTCTTAGCTCCAGACCTGTATTTCTCTCCAGACTGGATGTCCCTC
TTGGACTTCCCTAACTCTGGCCCAAGTCTATCTCTTCAACCCCATACTTACTTCCTTACC
CCCGAGTTGTCCCTCTACCCTAACTTCTTCATCTCATCTGTCTCCCACTGACCTTTCTTC
TCATCTGACTTCTCACATCTCAAGTTTCCCAGTCATGTCGTGTCCCCCGA
1 EXON 1 88953856 88954059 - 1 204
CCCCAAACCCTCCTTTCAGACCTCCCTCCCACACCCGGGTCCTCCGAACCCCACCCTTGC
CTCCCTGGGTATGTCTGAACTCTAAATCTTTGTCAACAGGGGTTGGGGGCCAAAAGAACC
AGCTACGAGAGGCGAGCATGGAGAACGGCGAGAGGAAGAAGCTGTCTTCCACTTTGTCAG
ATGGAGATCACAAAGAAGAAAATA
INTRON 1 - 2 88939039 88953855 14817
GTCTGTATCTTTCTTGTTCCGCATT..........CTTGATGTCTGTTTCTCTTTTGCAG
2 EXON 2 88938947 88939038 1 0 92
AGTTAAAACAAGGAATTCCCCAAGATTTGTCTTCTTCCCCCAAATTAGACAGATACAAAA
TAGCAAGACAGTTAACAGAAAAAGCCATCAAG
INTRON 2 - 3 88936127 88938946 2820
GTAAATGTGTTTCGGGACTTATGGG..........GCTAAGACGCCGCTGCTGTTTTCAG
3 EXON 3 88936003 88936126 0 1 124
GAGAGGAAGATTTTCTCCATCTATGGACACTACCCTGTCATCCGGGCCACCTTGCGAAGA
AAGGGCTGGGTGGAGAAGAAGTTCAATTTCTTCCCCAAAGCTCTCCAGAACCTTGGAAGT
GAAG
INTRON 3 - 4 88935029 88936002 974
GTAAACGGCACATGGGTGGAATACC..........TATGCCTCTTGTGTTTTGTTTGCAG
4 EXON 4 88934958 88935028 1 0 71
ATAAAAGTGCTGAGACCAAAGAAAATCAAGAAATAGCCTTGGAGAGATTCGATGATATCC
ACGATGTGATG
INTRON 4 - 5 88933959 88934957 999
GTAGGCCGCGTGGCCTGGTATTGGG..........TAGATGGCTCTTCTTGCCAGTCCAG
5 EXON 5 88933835 88933958 0 - 124
GTTGGTAAAGAACGAGATCCCATACCTCCTCTGGACTATCAAGAGGGATGTTGTGGACTA
CCACAGCCTGACCTGTGACCAGATGCTAAATCACTACGGGAAGACAGCATCATTCACAAC
CAAG
INTRON 5 - 6 88933553 88933834 282
GTGGATGAGAGGGCCTGGGCTTAGT..........GCCTGATACACTGCTCTCTCTGGAG
6 EXON 6 88933438 88933552 - - 115
ATTGGACTCTGCCTGAACATGAGAAGTCTGCCTTGGTACGTCCAAGCCAACCCGAACACC
TTCTTCCCACGGTGCTATGGCCTTTGCACTGAGAGCGAGAAGCAGGAATTCTTGG
INTRON 6 - 7 88932789 88933437 649
GTGAGTGACCCATGGCCTTCTGAGG..........GAGCGAGGCCTTGGTGTCCCTGCAG
7 EXON 7 88932660 88932788 - - 129
ATGACTTCCGGCGCACGGTGGCTGCCAGCATCCTCAAGTGGGTAGTCCTTCACCAGAATT
ACTGCAGCAAAGTCAAGGGCAAGAGTAAGAAGGAGGAGGCCAAGAACAGTGACCCCAGCC
CCAAGAAAG
INTRON 7 - 8 88925712 88932659 6948
GTACACAGCTACGGGGCGGGACCTT..........CTCAGGGCATGTGCTTGGGTTCCAG
8 EXON 8 88925525 88925711 - - 187
ATCCTGAAAATCCTGACCTCAAGCTACCAAGCCTCTCGGGACAGGTTGTAGACACAGCGT
GCAAGGTGTGCCAGGCCTACCTGGGACAGCTAGAGCATGAAGACATAGACGTATCGGAGG
CCAGCACCGAGGCCTTGTCTGAGGAGGAATGGAATGACCTGACACAGCAGTACTATCTAC
TGGTTCA
INTRON 8 - 9 88919680 88925524 5845
GTAAGATGCCACCCTGCTGCCTTGG..........GCCCTTTCTGGATCTTGCTTTTTAG
9 EXON 9 88919531 88919679 - - 149
TGGCAATGCTTCCATCACTGATTCGAAAAGTTACTTTGCGCAATGCCAAGCTCTGCTGAG
TAAGATCAGTTCTGTGAACCCTCAGACAGAGATCGATGGGATCCGGAACATCTGGATCAT
AAAGCCTGCAGCCAAGTCCCGGGGTCGAG
INTRON 9 - 10 88917268 88919530 2263
GTGAGTTCACTGGGCAGAGCCCTCC..........AAGGTACCACCTCTTGTTCTTGGAG
10 EXON 10 88917024 88917267 - - 244
ATATTGTGTGTATGGACCGTGTGGAGAACATCCTGAGTCTGGTGGCCGCAGACAGCCAGA
CCACAAAGGACAACAAATGGGTGGTCCAGAAGTACATCGAGACCCCAATGCTCATCTACG
ACACCAAGTTTGACATCAGACAGTGGTTCCTCGTCACAGACTGGAATCCCCTAACCATCT
GGTTCTACAAAGAAAGCTACCTCCGCTTCTCCACACAGCGCTTCTCCCTGGACAAGCTGG
ACAG
INTRON 10 - 11 88915777 88917023 1247
GTCAGCGGCGGGGAGCTCCGTATCC..........AATCTCACAAGGACATTGCCCACAG
11 EXON 11 88915341 88915776 - - 436
CGCCATCCACCTGTGTAACAACTCCATCCAGAGGCGCCTCAAAAATGATAAAGAGCGCAG
TCCGCTGCTACCTTGTCATAACATGTGGACCAGCACTCGTTTCCAGGAGTACCTGCAGAA
GAGGGGCCGAGGAGGAACGTGGGGTAGCATCATCTACCCGTCTATGAAAAGAGCTGTCAC
CAATGCCATGAGGGTAGCCCAGGACCACGTAGAAGCCCGTAAGAACAGCTTCGAGCTCTA
CGGAGCCGACTTCATCCTGGGGCGAGACTTCAAGCCATGGCTTATCGAGATCAACTCCAG
CCCCACCATGCACCCCTCCACTCCCGTCACAGCTCAGCTCTGTGCCCAGGTGCAGGAGGA
CACCATCAAGGTGGTGGTGGATCGCAAACTGGACCGAAACTGTGACATCGGCAACTTTGA
GCTTCTGTGGCGGCAG
INTRON 11 - 12 88914635 88915340 706
GTGAGGATAGCAGCTACCCTTCTTA..........CCTCACAGGCTATCTCTTCTCACAG
12 EXON 12 88913954 88914634 - - 681
CCTGCCGTGGAGCTGCCACCATTCAACGGGTCTGACCTCTGTGTGGAAGGTATCAGCGTG
AAGAAAGCCAAGAAGCAAATGCCGCCCATTGCCAGCGTCGGCCTCTCAGAATCACTCTTA
GATGCTCCACCCAAAGTGCGGAGTGCCCGGGCCCTGATGGAAACAGTGATCAGGCCTCCA
AGAACGACCGTGCGGCAGGACTGGAAACGGGAAGAAGCAAAGGTACTTTCAACCACTTGG
TCCATGCCAGTAATGGATGCAGAGGTCAGAGGTCGAGCAAAGCCCATCTATGCATTCGAG
GTCAATGACTACCAACATGTAGACAATAAGTCCCACAAGAGCGGTTATACCAGAGTCCAA
TCCAGTAAAGTCCCAGGGGTAACCTTAACAAGTGCACAGCACCCTGCCCTGTTTGCACAG
ACTATGAAACCCACACAGATGACCTCGTCTCCACCACCCACCGCGTCAGGTAACCATAGA
GACTCTTCGCCTTTCTGTCCCATTGTATTTGAGGAACTCTGGCTCCACCCCAATTCTCAG
AGACGACCTTCAAGCTGTATTCTCCAAAGCAGGGCACAGGGCTGGATCAGGGGGATCCCC
TGAGAGGATCTCACAAGGGGTGCGGGGGCAACACTGGCACTGACCTAGCCAGGCACTAGG
GTCTGCGGTGTAATGTTGGCC
3' upstream sequence
AAGGTGAGCAGCATACTTGGGTCCTATTGCAATAGTCCCAGTGGGGTTTCCTCAGTACTA
CTTGTTTCCTTTAAGCTAGAGCAGGGATCCAGGGACGGGTTATAGTGCTCAAACAGCATC
AAGTGCCACCACGGATATGCAAGGTGGAAGGACTGCTGAGCTCTTGCACATACTTTCCTG
AAGATTCAGATGGCGTGGACAGATCCGTGATACAGGGTGAAATATCTGAGCTGTGATTTC
ACCCAGGACTTCATTGGGCACTCGTTAACTGGCATTGGTTCAGAAAGTGTTGGCTCAGGC
CCCACCTTAAAGGATGCTTGTGCCCCTGTGCTATATCCTTCTACCTAATTAGTCTATCTC
TCTTACTGCCTCCTCGCTACCTGGTCCTGTCTATAGCTCTCTTGCCCGCTTGTTGTCTGT
GTCCTTGGATGGGAAGGGTCTGGAGCAGGTTCTCTCAATGCCACCTTTGCAATTGTACCC
TACTGTCAAGGATGGCATGTGGTGTGTGTCAGGTGAACACAGGTGTGTGTTGCCTGTCAA
GGCTGGGAATGGGGGGTGGGGGAGCATCTGGGTTAACCTCCATACCTATGCCTAAGCCAT
CCTGCCTGGATAACTCTGCAAAAGTGTGTCTAGGAACCCCAGGGGCTGCACACTCACAGA
GTTCTTCCTCTGGGGAAATGTCAGTAGAGACAACAGCTCTAGCTAACAAGTTGTAGGAAT
GTCTGTAACAGTGTAGCAATAAGCCACACACCATTAGCTAAAAAGGGAAGTTTAACTCTG
ATAGCCTGGTCAACGAGACTCTAGAGATGGTTTTCCCTCCAACAGCTCCTGTTGTCCAGC
AGTGACCTCTGATGACTGGTGACTGCATCACTCCTGGGTCCATCTTCATGCAAGCGTAAT
GTTTAGAGTTACCTCCCATAAGATAGCAATCCTTGTGTTAGATTCCCGCCCGCATTGTAG
TATGACCTCATTCAGGGATAACCTCAGCAAAGACTATTTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Ttll8 (ENSMUSG00000022388)
Transcript ID ENSMUST00000177254
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 189 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information