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Target CDS Information

Gene Symbol (Gene ID) Anks1b (ENSMUSG00000058589)
Cross Reference
EMBL AC107661, AC122212, AC132093, ...show all
GO GO:0005575, GO:0008150, GO:0046875
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Anks1b-005
OTTP OTTMUSP00000063654
OTTT OTTMUST00000114054
UCSC uc033frv.1
UniParc UPI00033353AE
Uniprot/SPTREMBL S4R1G5
Vega_transcript Anks1b-005, OTTMUST00000114054
Vega_translation 208417, OTTMUSP00000063654
Definition protein_id:ENSMUSP00000138209
translation:
MGKDQELLEAARTGNVALVEKLLSGRKGGILGGGSGPLPLSNLLSIWRGPNVNCTDSSGY
TALHHAALNGHKDIVLKLLQYEASTNVADNKGYFPIHLAAWKGDVEIVKILIHHGPSHSR
VNEQNNENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMI
ISAHPNLMSCNTRKHTPLHLAARNGHKAVVQVLLEAGMDVSCQTEKGSALHEAALFGKVD
VVRVLLETDYLEGAGRSAAVLEEHAQEDTAQETHLSSPAESPQKTKSETVTGELSKLLDE
IKLCQEKDYSFEDLCHTISDHYLDNLSKISEEELGKNGSQSVRTSSTINLSPGEVEDEEE
DPNSCGPTGLWEALTPCNGCRNLGFPMLAQESYPKKRNFPMEMEPSASLDTFPSENENFL
CELVDTAVTKKPCSLEIARAPSPRTDNASEVAITAPGTSHHRNSSTGPTPDCSPPSPDTA
LKNIVKVIRPQPKQRTSIVSSLDFQRMNHNQEYFEISTSTGCTSFTSSPAASPPTSSVET
TEVKNEGAEHADDLSQQEDDEP

Chromosome 10
Length
Position(start - end)
636956
89873672 - 90510629
Orient to Chromosome plus
Link Location : (10:89873672-90510629)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Anks1b (ENSMUSG00000058589)
Transcript ID ENSMUST00000182936
Reports
substitution
cSNPs6
Insertion390
Deletion490
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num1
synonymous substitutions 90077028 (p.Cys304Cys), 90077043 (p.Tyr309Tyr), 90163298 (p.Leu388Leu), 90307663 (p.Pro477Pro), 90359211 (p.His550His),
non-synonymous substitutions 90074051 (p.Thr273Ile),
B6 transcript
(ENSMUST00000182936)
MGKDQELLEAARTGNVALVEKLLSGRKGGILGGGSGPLPLSNLLSIWRGPNVNCTDSSGY
TALHHAALNGHKDIVLKLLQYEASTNVADNKGYFPIHLAAWKGDVEIVKILIHHGPSHSR
VNEQNNENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMI
ISAHPNLMSCNTRKHTPLHLAARNGHKAVVQVLLEAGMDVSCQTEKGSALHEAALFGKVD
VVRVLLETDYLEGAGRSAAVLEEHAQEDTAQETHLSSPAESPQKTKSETVTGELSKLLDE
IKLCQEKDYSFEDLCHTISDHYLDNLSKISEEELGKNGSQSVRTSSTINLSPGEVEDEEE
DPNSCGPTGLWEALTPCNGCRNLGFPMLAQESYPKKRNFPMEMEPSASLDTFPSENENFL
CELVDTAVTKKPCSLEIARAPSPRTDNASEVAITAPGTSHHRNSSTGPTPDCSPPSPDTA
LKNIVKVIRPQPKQRTSIVSSLDFQRMNHNQEYFEISTSTGCTSFTSSPAASPPTSSVET
TEVKNEGAEHADDLSQQEDDEP
MSMv4 transcript
MGKDQELLEAARTGNVALVEKLLSGRKGGILGGGSGPLPLSNLLSIWRGPNVNCTDSSGY
TALHHAALNGHKDIVLKLLQYEASTNVADNKGYFPIHLAAWKGDVEIVKILIHHGPSHSR
VNEQNNENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMI
ISAHPNLMSCNTRKHTPLHLAARNGHKAVVQVLLEAGMDVSCQTEKGSALHEAALFGKVD
VVRVLLETDYLEGAGRSAAVLEEHAQEDTAQEIHLSSPAESPQKTKSETVTGELSKLLDE
IKLCQEKDYSFEDLCHTISDHYLDNLSKISEEELGKNGSQSVRTSSTINLSPGEVEDEEE
DPNSCGPTGLWEALTPCNGCRNLGFPMLAQESYPKKRNFPMEMEPSASLDTFPSENENFL
CELVDTAVTKKPCSLEIARAPSPRTDNASEVAITAPGTSHHRNSSTGPTPDCSPPSPDTA
LKNIVKVIRPQPKQRTSIVSSLDFQRMNHNQEYFEISTSTGCTSFTSSPAASPPTSSVET
TEVKNEGAEHADDLSQQEDDEP
homology99.82 (562 / 562)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Anks1b (ENSMUSG00000058589)
Transcript ID ENSMUST00000182936
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTCACCAGAGAGGTAAAGCAAGAGGATGAAATATCCTTCAAGTCCCCCGG
ACTGGGACAGAAACTGCAGCAAAAGCGCCTCTTCTCAGCACCTCGTTCTCCATCACCTCC
TAGTGGAAGATTTTCCCCAAGTCTGGTTACTGACTCTGGGCTTCAGGCAGAGAAGGCGCC
TCAGCAGCTAGCGGGGTGATCTCCAGTACTCACACAGTTAAACCTCTTCAGAGACGGGAG
AAGGGAGCAGAAGCGGGGTGGGGGGTGGGGGGAGAAGAGAGAGGAGGGAGAGGGAGCAAA
GAGCGGGGAAGGAGGGAGGAGAGCGGAGGGAGCACGGAGGAGGGAGCAAGGAGGACCCCG
CCCACTGGCACAGAACTGCACCCCCCCCCCAACCCCCCGCCCGCCCCACGGTCGGCCCCG
GGCCGCACCTGCCGCGCGCACACGCCCCCCGCGCGCCGAGCCTCCGAGCCGCCGCCGCCG
CCGCCGCCCTCCGCACGCACCCGCCGCGGCTCGCCCGCACAGCCCAGCCTCGGCGCGGGC
CGCAGCCACCCCAGCCGCGGGCCGCGGCCGTCGTCGCCGTGTAAGCCCCGAGCCCGCCGG
GCGCGGAACCCAGGTGGATCCAGGCTGGGCGTTTGTACGCACGGGCCTCCGCTGCCGTGG
TTCGATACCCTCTAGCTCTGGGGAGGACGCGCTCGACTCGCTCCCTCCTCATCAGCCTCA
GAGCGCTCCTTGAGCTCCTCAGTGCCGGAGCATCCTCTCCGCTGCTCAGCATCCTCCTGT
CAGCGCCGGAGCATCCTGCTCAGGGCTCGGCGTTCTCTGAGCTCAGCATCCTCCTTCCGT
TCCTCGGCAGCGCCCGGGCCCGGTCCCCACCCGCTCGCACCCCACCCGCGGGAAGGAGGC
CTCGGGAATGCAGGGGAGTGGCTGTGGGGGCGCGTCGCCGCTTGGCCAGCCCCTCTGCCC
AAACACAGGCTGCTCCCCATTGTAGAAGCTGCGCGGAGAGAAGGAGGACG
1 EXON 1 89873538 89873805 - 2 268
GCGTGCTGCTCCCTGCGCGGGGCTGCAGGGAATAAGCCCGGGCATCCTTATAGGGTGGGG
CGGGGAGGGCCCTGGCTTTTGGGGAGTGGACCTGGAGCAGGGAAAGGACTCTGTAGCGGA
CTCGGTGAGAGACTATGGGGAAGGACCAGGAGCTGCTGGAAGCTGCTCGTACTGGCAATG
TGGCTCTGGTGGAGAAACTCCTATCTGGCAGGAAAGGAGGGATCCTGGGTGGTGGATCCG
GACCTCTGCCCCTGTCTAATCTGCTAAG
INTRON 1 - 2 89873806 90033213 159408
GTAAGAACTGGCACTCACTGCGGGC..........CTCTGCGCTTGTGTTTTGTCCGCAG
2 EXON 2 90033214 90033294 2 2 81
CATCTGGCGAGGCCCCAATGTGAATTGCACAGACAGTTCGGGTTACACCGCTTTACACCA
CGCAGCCTTAAATGGACATAA
INTRON 2 - 3 90033295 90042545 9251
GTAAGTGCCACTTATCCGGACGGGA..........TTCCTTTCGTTTACTTCTTCCTCAG
3 EXON 3 90042546 90042702 2 0 157
GGACATAGTTCTCAAACTGCTGCAGTACGAGGCATCCACCAATGTAGCAGACAACAAGGG
TTACTTCCCCATTCACCTGGCTGCCTGGAAAGGAGACGTGGAGATTGTGAAGATCCTCAT
CCATCACGGACCTTCCCATTCCCGAGTCAATGAACAG
INTRON 3 - 4 90042703 90049815 7113
GTGCACCCACCGAATGCTTGCTCAT..........TCTTTCGTCTCTTCGCCTTAACTAG
4 EXON 4 90049816 90050112 0 0 297
AACAACGAGAACGAAACCGCCCTCCACTGTGCAGCGCAATACGGACACTCGGAAGTAGTT
GCGGTTCTCCTAGAGGAACTCACGGACCCCACGATTAGGAACAGCAAACTCGAAACACCG
CTGGACTTGGCAGCACTGTACGGGCGGCTGAGGGTGGTGAAGATGATCATCAGCGCACAC
CCAAACTTAATGAGCTGTAACACCCGGAAGCACACGCCGCTCCACCTCGCAGCCCGCAAC
GGTCACAAGGCCGTGGTCCAGGTGCTGCTGGAGGCGGGGATGGACGTGAGCTGTCAA
INTRON 4 - 5 90050113 90069467 19355
GTGAGTCTGGAAGCTGTGCGTTTAA..........CCTTTTCTTTCTCTTTTCTTTTCAG
5 EXON 5 90069468 90069543 0 1 76
ACAGAAAAGGGGAGTGCTCTTCACGAAGCGGCTTTGTTTGGGAAGGTGGATGTGGTTCGA
GTTCTGTTAGAAACAG
INTRON 5 - 6 90069544 90073978 4435
GTAGCTATCATGGTTCTCCATGGAG..........TTCACAGATTTAATTCTACCCACAG
6 EXON 6 90073979 90074092 1 1 114
ATTACTTGGAAGGCGCAGGAAGGTCAGCAGCAGTCCTGGAAGAGCATGCTCAGGAAGATA
CAGCACAAGAGATACACCTTTCGTCTCCTGCCGAGTCTCCTCAAAAGACTAAAA
INTRON 6 - 7 90074093 90076975 2883
GTGCGTAGTTGGTTAAACCCCTGAA..........TGAAAACAACTTTGTTTTCTTGTAG
7 EXON 7 90076976 90077142 1 0 167
GTGAAACTGTCACTGGAGAACTATCAAAACTCCTGGATGAAATAAAACTCTGTCAAGAAA
AGGACTACTCCTTTGAAGATCTGTGCCATACGATCTCAGACCACTACTTAGATAACTTGA
GCAAGATTTCAGAGGAAGAGCTTGGGAAAAATGGAAGCCAGAGTGTA
INTRON 7 - 8 90077143 90163160 86018
GTAAGTAAGGGGGGTGGGACAAAGA..........TGGTGTAATATAAATTTGATTTCAG
8 EXON 8 90163161 90163304 0 0 144
AGAACTTCATCTACAATAAATTTGTCACCAGGAGAAGTGGAAGACGAAGAGGAGGATCCA
AACTCTTGTGGGCCCACAGGACTCTGGGAAGCGCTAACTCCTTGTAACGGATGTAGGAAC
CTTGGCTTTCCCATGCTTGCACAG
INTRON 8 - 9 90163305 90260652 97348
GTAAAACTTCGCTTTTGTTAAGGTA..........GCTTTTTCTTCCATCTCCTTTTCAG
9 EXON 9 90260653 90260818 0 1 166
GAGTCTTATCCGAAGAAGAGGAATTTCCCCATGGAAATGGAACCATCTGCTTCTCTGGAC
ACATTCCCTTCGGAAAACGAGAACTTCCTTTGTGAACTCGTGGACACAGCTGTTACAAAG
AAACCCTGCTCCTTAGAAATCGCAAGGGCACCTTCTCCGAGAACTG
INTRON 9 - 10 90260819 90307568 46750
GTAATATTTCCTGCTCACAATTGGT..........ATGGCAGTTCTATTTTTGTTCACAG
10 EXON 10 90307569 90307705 1 0 137
ATAATGCCTCTGAGGTAGCAATTACTGCTCCAGGAACTAGTCACCATAGAAACAGCTCTA
CAGGCCCAACACCTGACTGCTCACCTCCATCCCCCGATACTGCCCTAAAAAATATCGTAA
AAGTTATCCGACCTCAG
INTRON 10 - 11 90307706 90359034 51329
GTAAGTAAGTACCCAGGATGACATT..........CTCTTGTCCTGCTTGTTTATTTTAG
11 EXON 11 90359035 90359215 0 1 181
CCAAAACAACGGACATCTATTGTGTCTTCTCTGGATTTCCAGCGAATGAATCATAACCAA
GAATACTTTGAAATCAGCACATCTACAGGGTGTACCAGCTTTACTTCCAGCCCTGCTGCT
AGCCCTCCCACCTCTTCTGTGGAAACCACAGAAGTCAAGAACGAGGGAGCTGAACATGCA
G
INTRON 11 - 12 90359216 90510595 151380
GTAAAACCATGCACTTTATGCAGGT..........CTGACGGCCCTCTTCCTTTTTGCAG
12 EXON 12 90510596 90510629 1 - 34
ATGATCTCTCTCAGCAGGAAGATGACGAACCCCC
3' upstream sequence
AAAAGAGTATGATGCTGGGCAATTCGCAGGCCTTCTCCATGGATCCTCTCCAGCCTGTGA
GTCTCCTGAAAATCCGTTTCATCTGTATGGGAAAAGAAATACATGTGAAGATGGACCAGA
TGAAGCCAGTTTGGCAAACAGTCCTTTGCCTTTCAAACAGACTCCAATAGAAAACAACCC
GGAACCTTCGGTGAAGAAAGTTAAACCCAAAGTGGTCAGTAGAACAATTTTCCACAAAAG
AAACCACCAACTTGAGAACCATACCATCGTTGGCACAAGAATGTCCAGGAGTGGATCCCG
CAATGGTGACCAATGGGGTGTGAATCCAGGGGGCTTTGTGGAGAGAGCATGTACTCTGGG
GAGAATAAGGTCATTGCCTAAAGCCTTGATCGACATGCATTTATCCAAAAATGTCTCCAA
GTCCGATTCTGATCTTATTGCCTACCCTTCCAAGGACAAAGTGAGAGTTAACTGGAGCAA
ATCGTCAACTGCGGAGCGCAGTTCCAAAGATAATTCTGAGAGAACACCTTCTTTCACATC
TGAATGGGAAGAAGTAAGTCCAGCTTTTCTTGTTGCTCTTTATGTAGGCTTTGGAGTTGA
ATGAAGTTCGGAAGAAAGATTTTCAGTTTTTAAAATCTTTCAGATGCTGAAGTGGGGGGG
GGGAGGGGTAGGCGTTGTTAATAAATGCATACAGTTCCAACTGGAAGGGAAAGGTTCTAT
GGATAATATACAGTAATTTCACAGCAAGTGGGAAAATGAGCGCATTGCTACATGTGTGGG
GGACACTTTGTTTCCATAGAAATTGGTATCAAGCAGAAGTAATAAGTAACTGTGAGGTGC
AGGAGACCCCTCCCATCATGTCCCACCAGGCAATGCCGGCTGACAGTTTGAGAAAAATCT
TACTTTGCTGTGTCATTTAGCGACTTGCTAAATGTTTTGTTAGCATGCCTTCCTTCTTTA
AAGTATCTTTGATTTTCGAAACAGATCCTTATGATTTTAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Anks1b (ENSMUSG00000058589)
Transcript ID ENSMUST00000182936
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 562 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information