MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Kansl3 (ENSMUSG00000010453)

Cross Reference

EMBL	AC132456
GO	GO:0000123, GO:0005634, GO:0005654, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Kansl3-009
OTTP	OTTMUSP00000068264
OTTT	OTTMUST00000126133
UniParc	UPI000462107D
Uniprot/SPTREMBL	A0A087WQ64
Vega_transcript	Kansl3-009, OTTMUST00000126133
Vega_translation	178961, OTTMUSP00000068264

Definition

protein_id:ENSMUSP00000140058
translation:

MAHRGGERDFQTSARRMGTSLLFQLSVHERELDLVFLDHSYAKPWSAHPDASSARPTRML
FVTPRRQQENTIVCGLVLFPHLFTVSQTFQ

Chromosome

1

Length
Position(start - end)

2349
36365633 - 36367983

Orient to Chromosome

minus

Link

Location : (1:36365633-36367983)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Kansl3 (ENSMUSG00000010453)
Transcript ID	ENSMUST00000187628

Reports
substitution
cSNPs	0
Insertion	4
Deletion	8
SNPs	+1kb 36368243(c.-260A>G), 36368439(c.-456G>T), 36368536(c.-553C>T), 36368672(c.-689T>C), 36368678(c.-695A>G), 36368739(c.-756C>T), 36368750(c.-767T>C), 36368827(c.-844G>A), 36369091(c.-1108T>C), 36369093(c.-1110T>G), 36369163(c.-1180A>C), 36369167(c.-1184C>G), 36369260(c.-1277C>G), 36369271(c.-1288T>C), 36369280(c.-1297C>T), 36369305(c.-1322G>A), 36369307(c.-1324C>T), 36369346(c.-1363C>T), 36369403(c.-1420C>T), 36370583(c.-2600C>G), 36370625(c.-2642C>T), 36370634(c.-2651C>T), 36370689(c.-2706C>A), 36370697(c.-2714A>C), 36370786(c.-2803C>T), 36370952(c.-2969T>C), 36371026(c.-3043C>T), 36371891(c.-3908C>T), 36371899(c.-3916A>T), 36371967(c.-3984A>G), 36372125(c.-4142G>A), 36372264(c.-4281T>C), 36372440(c.-4457T>C), 36372450(c.-4467C>A), 36372472(c.-4489C>T), 36372498(c.-4515T>C), 36372607(c.-4624T>C), 36372616(c.-4633T>C), 36372685(c.-4702T>G), 36372688(c.-4705T>C), 36372787(c.-4804T>C), 36373013(c.-5030C>A), 5'UTR 36367995(c.-12T>C), CDS 3'UTR INTRON 36366082(c.216-392A>G), 36366170(c.216-480C>A), 36366240(c.216-550A>T), -1kb 36360973(c.4660A>G), 36361201(c.4432A>G), 36361269(c.4364A>G), 36361728(c.3905G>C), 36362108(c.3525A>G), 36362133(c.3500A>G), 36362389(c.3244G>A), 36362939(c.2694T>A), 36363085(c.2548C>A), 36363089(c.2544C>T), 36363095(c.2538A>G), 36363597(c.2036G>A), 36363606(c.2027A>G), 36363939(c.1694C>T), 36365077(c.*556G>A),
Insertions	+1kb 36371144 (c.-3162_-3161insC), 36371617 (c.-3635_-3634insT), 36371869 (c.-3887_-3886insT), 5'UTR CDS 3'UTR INTRON 36365870 (c.216-181dupA), -1kb
Deletions	+1kb 36369723 (c.-1743_-1741delGAA), 36372626 (c.-4646_-4644delGAT), 5'UTR CDS 3'UTR INTRON 36366270 (c.216-588_216-581delGCTGAGCC), 36366554 (c.216-865delT), 36367211 (c.215+556_215+557delCT), -1kb 36363496 (c.2132_2136delCAAAA), 36364859 (c.770_773delACAC), 36364918 (c.*714delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000187628)	MAHRGGERDFQTSARRMGTSLLFQLSVHERELDLVFLDHSYAKPWSAHPDASSARPTRML FVTPRRQQENTIVCGLVLFPHLFTVSQTFQ*
MSMv4 transcript	MAHRGGERDFQTSARRMGTSLLFQLSVHERELDLVFLDHSYAKPWSAHPDASSARPTRML FVTPRRQQENTIVCGLVLFPHLFTVSQTFQ*
homology	100.00 (91 / 91)

Exon Detail Report

Gene Symbol (Gene ID)	Kansl3 (ENSMUSG00000010453)
Transcript ID	ENSMUST00000187628

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GCTCGGAGAAGCCCTCGGGGCTCCGCGGGCATGAGGGGTCGGGGGCTGAA GCCGCGGGCCAGGCCGGGCCGGCCGGGCGGGGCGCGGGAGGCAGACGCGGCGCTGGGGCG GCCGAGGCGCGAGGCCGAGGAGGGCCCCGGGAGGGGAGGTGGGGCCGGGCGGCTCCTCCT CGCCGGGAACTCGGGATGACCTTGGCCGAGTCGTCCGGGCTCCGAGGCCGCCGCCCGGGT GGGCCGTTTTGAGGTTCTGCGGTTCCGTGGCGGGAACCTCTCAGAGGAGCGGGCCGTTTG CCGGGCGCCTCGTCGAGGGAGGGCGAAGGAGGAGAGGCCTTCTGAGGGCCCGGCCGGGCT GAGGGCGGGCTCTGGTTTTCCTCTTCCCAAAACTCCGGAGTACCATGAGGTTGATGCAAA CCTTTGGTGGAGCGTGACCCTAGGAGAGTCCCCTTGACCTCAGCCCAAAGCAATGAAGCT TGGAGGCCCGCGGTGCCCGCCTGTTGTGCTGGGGCTACCCGAGCAGACCAGCCCTGCCCA CGTCCTGTTTAGGGGACGAAAAGTAGGGACCTTTAGCTTTTGATGAATTCATGTTTGTGA TCCCTCTGGTTTTCAAAAACCTTTACCACCCAGGAAGAAAATTGCCCAGCAAATTTAGGT TTTTGTTTTTGAGATGGGATCTCAATATATTGCTCTGGCTGTCCTGGAACCCACTCTGTA GACTAGGCTGCCCTTGAACTCCCGGAGATCCGTCTGCTTCCGCCTCCCCAGTGCTGGGAT TAAAGGCGTGCGTCACCACGCCTTGGCAGTTGCAAAGGTCATGTTTTTGTGAACTGTGGA GTCTTGTCAGTTTACAGTTATAAAATTGTGTATGGCACCGTTCTGTTTGGTGGCGGTGTG GGAGGACACATAGATGTGCATAATCAAAGATCGAATGCTGAGCATAAAGACATGTTTTGA TAGTGAAAGTTGGGAGAAATGGAAGCTATTGAATTCACAAGCCCCCTTTC
1	EXON 1	36367769	36368041	-	2	273	ACTGCAGGTGACTAGCATGCAGATATTCACACCCTGACTTGGCTGCCTGACTACTGACAT GGCCCACCGGGGTGGGGAGAGGGACTTCCAGACTTCAGCTCGGCGGATGGGTACCTCCCT GCTCTTCCAGCTTTCAGTGCATGAGCGGGAACTGGACCTCGTTTTCCTGGATCATAGCTA TGCAAAACCGTGGAGTGCCCACCCAGATGCCAGTAGTGCCCGCCCCACCCGCATGCTCTT TGTAACCCCCCGTCGGCAGCAGGAGAATACTAT
	INTRON 1 - 2	36365691	36367768			2078	GTGAGTTTGAGAATACCATGTGAGT..........GGTTAAGCATCTGTGTTGTGTGAAG
2	EXON 2	36365628	36365690	2	-	63	TGTGTGTGGCTTGGTCCTATTTCCTCACCTGTTTACAGTGAGTCAGACGTTCCAATAGAT GTG
	3' upstream sequence						GAGACGGTCACGGCAACTCCTGTTCCACTTTATGACAATCAGAAGGCAAGAAGTGTGATG AACGAGTGTGAACGGCACGTGATCTTCGCCAGGACAGATGCAGATGCTCCTCCTCCGCCA GAAGACTGGGAAGAACATGTCAACAGGTAGGCCAGTCCGGGATAGATTGGCCAGTTTGCA GCTAATGTTAGTACTTGGTAATTCTGTAGTATCATTGTCATTGAAATGTTGACTAGAGCT CATCTCATTTCGCTTACGGCCATGCAGTGGGGATGTCTCCGCTCACTGTCCTAATTCTAG CACACTGACCAGCATACACAGTGGCAGATGTCTACAGTTGCAGCGCCGTGGAAGGCCTAG GCAGGAGGAGGACTTGAACTTACGATGAGTGTGGTCAGCTCTTTTTACAGCAAGGAGTGG TTGGGGATGTTGCACAGTGGTAAAGCTTTTTCCTGGCATGCGTGAGGCCCCAACACCACA AAACTGAAATAATTCAGAGCCACCCAAACTCCCTAAAAAACTAAACTTATGTTTGCATTG ATATGATATGATATGATCTACAATTAAGGTAATAAATGTTTTGGAGTCGTATGTAAAGTC AATAGCTTGCTTGAATTGCTTTAAAGTATAGTTTTGCAAGGTTCAAGGTATAGCTCCATG ACAGAACTTAATTTTCAAAAATGATGAGAGGGACTAGAGAGATGGTTCAGGGGGGGGATG CTTCTGGCCTTCTTGGGCACCTGTATGCACATACCTACACATGTACACACACACACACAC ACACACACACATATACACACATAATAATAATAATAATAATAATAATAATAATAATAATAA TGATGATGATGATGATGATGATAATAAACAACTTTTAAAAATGTGGGAAACAGGGCCTGA AGAGATGGCTCAGTTGTTAAGGGAACTGGCTGCTCTTTGAGAGGACCCGATTAAATTCCC AGTACCCACATGGCAGCTCAGACTTGTCTGTGACTCCAGT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Kansl3 (ENSMUSG00000010453)
Transcript ID	ENSMUST00000187628

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 91 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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