MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Msc (ENSMUSG00000025930)

Cross Reference

EMBL	AC115876
GO	GO:0005634
goslim_goa	GO:0005575, GO:0005622, GO:0005623, ...show all
MGI_trans_name	Msc-003
OTTP	OTTMUSP00000068014
OTTT	OTTMUST00000125488
UniParc	UPI0004620FDA
Uniprot/SPTREMBL	A0A087WRR6
Vega_transcript	Msc-003, OTTMUST00000125488
Vega_translation	178747, OTTMUSP00000068014

Definition

protein_id:ENSMUSP00000140741
translation:

AARHQAFQTGHAAPGFQLHRAPAPAAAGGPLRGQLCAPCEPEKSCGQPMRKA

Chromosome

Length
Position(start - end)

844
14754508 - 14755353

Orient to Chromosome

minus

Link

Location : (1:14754508-14755353)
/

Detail Map

name	Gm9947 (ENSMUSG00000054493)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm9947 note : predicted gene 9947 [Source:MGI Symbol;Acc:MGI:3642739]

name	Msc (ENSMUSG00000025930)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Msc note : musculin [Source:MGI Symbol;Acc:MGI:1333884]

name	Msc (ENSMUSG00000025930)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000027062

name	Msc (ENSMUSG00000025930)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000190719

name	Msc (ENSMUSG00000025930) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14825.1 Uniprot/SWISSPROT:O88940 RefSeq_peptide:NP_034957 RefSeq_mRNA:NM_010827.2 Vega_transcript:Msc-001 Vega_transcript:OTTMUST00000125487 UCSC:uc007aja.2 EMBL:AF087035 EMBL:AF108216 EMBL:BC103592 EMBL:BC103593 EMBL:BC103594 EMBL:BC103623 GO:GO:0000122 GO:GO:0000980 GO:GO:0001206 GO:GO:0005634 GO:GO:0006351 GO:GO:0014707 GO:GO:0046983 GO:GO:0060021 GO:GO:0060539 MGI_trans_name:Msc-001 Vega_translation:178746 Vega_translation:OTTMUSP00000068013 goslim_goa:GO:0001071 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0048856 protein_id:AAC69869.1 protein_id:AAD10053.1 protein_id:AAI03593.1 protein_id:AAI03594.1 protein_id:AAI03595.1 protein_id:AAI03624.1 OTTP:OTTMUSP00000068013 OTTT:OTTMUST00000125487 UniParc:UPI0000022748
definition	note : transcript_id=ENSMUST00000027062 protein_id : ENSMUSP00000027062 translation : MSTGSVSDPEDSEMRGLQRVYPAPASKRPPLLRMERGYGSPSDISSAEEEDGEEEPGSLGAAGGCKRKRLRGADAGGAGGRAGGAGKKPLPPKGSAAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYEDSYVHPVNLTWPFVVSGRPDSDSKDVSAANRLCGTSA

name	Msc (ENSMUSG00000025930) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Msc-003 Vega_transcript:OTTMUST00000125488 Uniprot/SPTREMBL:A0A087WRR6 EMBL:AC115876 GO:GO:0005634 MGI_trans_name:Msc-003 Vega_translation:178747 Vega_translation:OTTMUSP00000068014 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0043226 OTTP:OTTMUSP00000068014 OTTT:OTTMUST00000125488 UniParc:UPI0004620FDA
definition	note : transcript_id=ENSMUST00000190719 protein_id : ENSMUSP00000140741 translation : AARHQAFQTGHAAPGFQLHRAPAPAAAGGPLRGQLCAPCEPEKSCGQPMRKA

name
type	misc_feature
link
xref
definition	note : contig AC115876.18 18989..163698(1)

name	Gm9947 (ENSMUSG00000054493)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000125543 Vega_transcript:OTTMUST00000125543 UCSC:uc007ajb.1 Clone_based_vega_transcript:RP24-356G6.1-002 MGI_trans_name:Gm9947-002 OTTT:OTTMUST00000125543 RNACentral:URS000075FC1F
definition	note : antisense note : transcript_id=ENSMUST00000187401

name	Gm9947 (ENSMUSG00000054493)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000125491 Vega_transcript:OTTMUST00000125491 Clone_based_vega_transcript:RP24-356G6.1-001 MGI_trans_name:Gm9947-001 OTTT:OTTMUST00000125491 RNACentral:URS000077A8E8
definition	note : antisense note : transcript_id=ENSMUST00000067599

name	Msc (ENSMUSG00000025930)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000125489 Vega_transcript:OTTMUST00000125489 MGI_trans_name:Msc-004 OTTT:OTTMUST00000125489
definition	note : retained_intron note : transcript_id=ENSMUST00000188982

name	Msc (ENSMUSG00000025930)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000125490 Vega_transcript:OTTMUST00000125490 MGI_trans_name:Msc-002 OTTT:OTTMUST00000125490
definition	note : retained_intron note : transcript_id=ENSMUST00000190471

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Msc (ENSMUSG00000025930)
Transcript ID	ENSMUST00000190719

Reports
substitution
cSNPs	1
Insertion	8
Deletion	3
SNPs	+1kb 14755470(c.-117G>A), 14755497(c.-144T>C), 14755776(c.-423C>G), 14756074(c.-721G>A), 14756205(c.-852C>T), 14756345(c.-992C>A), 14756516(c.-1163C>T), 14756523(c.-1170A>G), 14756752(c.-1399G>A), 14756813(c.-1460T>C), 14756824(c.-1471T>C), 14756859(c.-1506T>C), 14756874(c.-1521G>T), 14756926(c.-1573T>C), 14757010(c.-1657T>C), 14757051(c.-1698C>T), 14757052(c.-1699T>G), 14757184(c.-1831C>T), 14757291(c.-1938C>T), 14757345(c.-1992T>C), 14757366(c.-2013G>T), 14757370(c.-2017G>A), 14757408(c.-2055A>G), 14757503(c.-2150G>A), 14757583(c.-2230A>G), 14757893(c.-2540G>A), 14757991(c.-2638T>A), 14758118(c.-2765T>C), 14758126(c.-2773T>C), 14758291(c.-2938A>C), 14758338(c.-2985C>T), 14758639(c.-3286T>C), 14758725(c.-3372G>A), 14759050(c.-3697C>A), 14759433(c.-4080C>T), 14759437(c.-4084G>A), 14759438(c.-4085T>C), 14759460(c.-4107A>G), 14759635(c.-4282A>T), 14759727(c.-4374A>T), 14759736(c.-4383A>G), 14759840(c.-4487G>A), 14759868(c.-4515A>C), 14759875(c.-4522C>G), 14759955(c.-4602A>G), 14759998(c.-4645T>C), 14760015(c.-4662G>T), 14760232(c.-4879A>G), 5'UTR 14753775(c.553T>C), 14753836(c.492A>G), 14753952(c.376G>A), 14754044(c.284T>G), 14754065(c.263T>C), 14754084(c.244C>T), 14754229(c.99G>A), 14754237(c.91G>C), CDS 14755347(c.7C>G), 3'UTR INTRON 14754638(c.125-96G>A), 14755011(c.124+219A>G), -1kb 14748963(c.5545G>A), 14749076(c.5432G>T), 14749121(c.5387A>C), 14749180(c.5328C>T), 14749285(c.5223G>A), 14749316(c.5192G>A), 14749431(c.5077A>G), 14749553(c.4955G>A), 14749652(c.4856A>T), 14749660(c.4848C>T), 14749663(c.4845T>A), 14749831(c.4677C>A), 14750015(c.4493C>T), 14750038(c.4470G>A), 14750423(c.4085A>G), 14750457(c.4051A>G), 14750461(c.4047T>C), 14750474(c.4034G>A), 14750586(c.3922G>T), 14750722(c.3786C>T), 14750738(c.3770A>G), 14750774(c.3734A>C), 14750884(c.3624A>G), 14750931(c.3577A>T), 14751169(c.3339C>T), 14751258(c.3250T>C), 14751618(c.2890A>G), 14751873(c.2635C>A), 14751874(c.2634G>A), 14751891(c.2617T>C), 14751923(c.2585T>C), 14751939(c.2569A>G), 14752020(c.2488T>C), 14752657(c.1851C>T), 14752969(c.1539G>C), 14753047(c.1461T>C), 14753196(c.1312G>A), 14753220(c.1288A>G), 14753392(c.1116T>C), 14753481(c.1027G>A), 14753684(c.824C>T), 14753687(c.821T>C), 14753693(c.815C>T), 14753707(c.801A>G),
Insertions	+1kb 14757572 (c.-2220_-2219insAAC), 14757950 (c.-2603_-2598dupCGCAGT), 14759284 (c.-3932_-3931insGC), 14759353 (c.-4001_-4000insA), 14759355 (c.-4003dupA), 5'UTR CDS 3'UTR INTRON -1kb 14749466 (c.5041_5042insA), 14752261 (c.2246_2247insT), 14752481 (c.2026_2027insCAGC),
Deletions	+1kb 14756124 (c.-772delA), 14757383 (c.-2032_-2031delAC), 14759514 (c.-4167_-4162delCTGTGT), 5'UTR CDS 3'UTR INTRON -1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	1
synonymous substitutions
non-synonymous substitutions	14755347 (p.Arg3Gly),
B6 transcript (ENSMUST00000190719)	AARHQAFQTGHAAPGFQLHRAPAPAAAGGPLRGQLCAPCEPEKSCGQPMRKA*
MSMv4 transcript	AAGHQAFQTGHAAPGFQLHRAPAPAAAGGPLRGQLCAPCEPEKSCGQPMRKA*
homology	98.11 (53 / 53)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Msc (ENSMUSG00000025930)
Transcript ID	ENSMUST00000190719

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GAGACAAGACGCACTGGGCATGCTCAGATTCTTCAGTTCCCACTAAGACC AGCTGCAGGTGAAAATGGAATGAGTAGGAACAAGGTCTTTTCTTTTTGTTCCCAAATCTC ACTTACCTCGCACAGATACTCTGAGGGTCAGTCGTGGGTGTAGAGGCCTAAGTCTTTGCT TTGCGCGCAAACATTCCTTGCCCCCGCCCCGCTAACCGCAGGGTTCAGGGGGGAAAAAAC GATCCCCACCCCTTCCACGCCCCTGCCCCACCTCTTGTCCCCCTTTCAAACCCCCTCTAC TTTGCCGAGGGGGAGGGGGGTGGCTTTTCCCTAAGAGTACAGATAAATAGTCCTGTCAAA AGGCTCAGCTCGCGGCTGTACTTTTGGATCCGGAGTCAAGTTCAGCAGAGCCCTGGGCTA CAGGGTCAGCAGCAGATCGCGCCCACTCCAGGCGCCCAGCTCACAGGGGAGCCTCAGTGC GGAGGCAAGCCCTGGTCTCTGGTCCTCCCCTGGGCTCTCCCACACCCCATCCTCTGTCAG AGAGAAGAAGCCAGAGAAAGCGAGACTGGCCGGGGAGGAGAAAGGCGGGCGCGCGTGGGC GCCGGGGAATAGGCGATGTCCACCGGCTCGGTGAGTGACCCCGAAGACTCGGAGATGAGG GGGCTGCAGAGGGTCTACCCGGCCCCGGCCTCCAAGAGGCCGCCCCTGCTCCGCATGGAG CGCGGTTACGGCTCGCCCAGCGACATTTCTTCTGCGGAAGAGGAGGACGGTGAAGAGGAG CCCGGCTCCCTGGGAGCCGCGGGAGGATGCAAGAGGAAGCGGCTCCGTGGGGCTGACGCT GGCGGCGCAGGTGGCCGCGCAGGCGGCGCGGGGAAGAAGCCGCTCCCGCCTAAAGGCTCG GCCGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAACGCCCGCGAACGCGCCCGGATG CGCGTGCTGAGCAAAGCCTTCTCCAGACTGAAGACCAGCCTGCCCTGGGT
1	EXON 1	14755230	14755353	-	1	124	GCCGCCGGACACCAAGCTTTCCAAACTGGACACGCTGCGCCTGGCTTCCAGCTACATCGC GCACCTGCGCCAGCTGCTGCAGGAGGACCGCTACGAGGACAGCTATGTGCACCCTGTGAA CCTG
	INTRON 1 - 2	14754543	14755229			687	GTAGGGATGCTGCGCTCGAGGCCGG..........TTCTAAACTCTCGCCCTTTTCACAG
2	EXON 2	14754506	14754542	1	-	37	AAAAATCATGTGGGCAACCCATGAGGAAAGCATGAAG
	INTRON 2 - 3	14754326	14754505			180	GTACGCTGTCGCTCTCAAATAATCA..........CTGATGCTCATTTCAATTTTTTCAG
3	EXON 3	14753746	14754325	-	-	580	ACGTGGCCATTCGTGGTCTCTGGACGCCCAGACTCTGACAGCAAAGACGTTTCTGCAGCC AACAGGCTTTGTGGAACTTCCGCTTAGACGGACAGGACAGTTAGATGGATTGTGGTAAAC GCAAAGGACTGGGCCAAGGAAGTCCCACTGGATTCTGGACCTTCTCCTTTCCCTGGGCCT GTGAACAAGACAGGAGACAAGTGTGGTTTGCCCTCCTGGAGCGCAGGTGGCCATGGGTGC CTCAAATCAGTGCAAACTTCCGTAACCAAAGAAAGCCCAGTGTCAGGGGAAGAATACGTG GACCAGGTAAAAACCTAGGGCTTTAGCTCTGATCACAACCCCCTGCCTGCTATCTGAGTC CAGTGCAGAAACGAGTTGGTTTTGAAGCTAATCTTGATTGCCTTGTGGTTGATGGCAAGG TCCTGCACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGTTTCCCAGCACTAGAAAG AAGGCCGGCGTTAGAGCTCTTCGGGGGCCTGTCACTAAGGGCAGTGTTGCTACAGACAGT GGCATACTCTCCCTGGGCAGGACATGTTGAGGTGGAGACA
	3' upstream sequence						TTAACTCCAGGTGCTGGTTTTGCTCGAAATCTCTGCAGGCTGGGGTTCATTTTCTGAGCT CTCTCCTCTGTTTAATCAGTGTTGGGTCTCCATTCAGTGAGTGCAGCTTGTTTATGGGGT CTCAGCTCCTTCCCACCCACACTGTCCCCTATTTGGGGACATGTGCTTCACCCCTCTAAT TGTCTCACCCTGCCACAGCATAGCCTTCTGTGGGGTTCCTGGTCTTTCAGGGATGTACTA TTCTTCCTGGTCCAAGGACTGTGTATGGTGGGTGGCTGGGGCTAGGGCTGGTCTCTATTA TACTGGTTTCTACCCAGTACATGGTGCTTAGTGGTCCTGGCAATGCTGCACTACCATGGT AACTAACATATGTAAATAAATTTATTTTTTATGGACAAAACATGCATTGTAAAAGTTCTT CCTAAGGCCGTTAGGTGTGGAAATCAACTATAAATATGTAGGACTTTCCTCTCTCAGTTG GCTGTCATTATGTAGGAAGGATGGCAATGTTTAGTCAGATTTCCAGTATCTCTTTCTCAT CACCACTCCATATACAGACATATATGAGAAGCTCGCTATGTAAGCGCAGCCGCCACTGAA TTCACAATCCTCTTCATGCTGCCCCGTTAGTGCTGGGATTACCAGCGTGGTTGCCAGAAT GAGCCACCATATCAAATCAAAATACTCCGTGTTTCTGACCTTTCCAGAGTCGCCCCTGGA AAGCAAGAACTAGAAGTCTGGTAAAGGTGAAACAATTGGAGGTTAGGGTTGCCTAGCGGT TGGGGGTGGGATACAAACACATCTAAAATAAATATAGTAGTTAATTAATAATTTTCAATC CTCATTACTCTGCCTCTATGTGTTTCTGTGTTCGTTTCTCTCTGTCTTTCGTTCTCTCTC TTTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCACACACAC ACACACACACACACACACACACACACACACACACACACAT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Msc (ENSMUSG00000025930)
Transcript ID	ENSMUST00000190719

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 53 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information