MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Cd22 (ENSMUSG00000030577)

Cross Reference

EMBL	AC165340
GO	GO:0005887, GO:0007166, GO:0009897, ...show all
goslim_goa	GO:0003674, GO:0004871, GO:0005575, ...show all
MGI_trans_name	Cd22-013
OTTP	OTTMUSP00000068562
OTTT	OTTMUST00000126819
UniParc	UPI0004621059
Uniprot/SPTREMBL	A0A087WQ27
Vega_transcript	Cd22-013, OTTMUST00000126819
Vega_translation	200796, OTTMUSP00000068562

Definition

protein_id:ENSMUSP00000140014
translation:

MRVHYLWLLLILGHVASARYSSANDWTVDHPQTLFAWEGACIRIPCKYK

Chromosome

7

Length
Position(start - end)

351
30877734 - 30878086

Orient to Chromosome

minus

Link

Location : (7:30877734-30878086)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Cd22 (ENSMUSG00000030577)
Transcript ID	ENSMUST00000190753

Reports
substitution
cSNPs	2
Insertion	5
Deletion	19
SNPs	+1kb 30880362(c.-2276A>C), 30880402(c.-2316C>T), 30880470(c.-2384C>T), 30880471(c.-2385G>C), 30880545(c.-2459G>A), 30880631(c.-2545C>G), 30880634(c.-2548G>T), 30880732(c.-2646T>G), 30880768(c.-2682T>C), 30880883(c.-2797G>T), 30880902(c.-2816C>T), 30880917(c.-2831C>T), 30881143(c.-3057G>A), 30881210(c.-3124T>C), 30881259(c.-3173T>C), 30881294(c.-3208C>T), 30881657(c.-3571A>G), 30881709(c.-3623G>A), 30881712(c.-3626C>A), 30881813(c.-3727T>C), 30882012(c.-3926G>C), 30882369(c.-4283C>T), 30882441(c.-4355T>C), 30882487(c.-4401C>G), 30882495(c.-4409A>G), 30882501(c.-4415C>G), 30882819(c.-4733G>A), 30882843(c.-4757T>C), 30882858(c.-4772G>C), 30882866(c.-4780A>G), 30882889(c.-4803C>T), 30882952(c.-4866C>T), 30883009(c.-4923C>T), 30883028(c.-4942T>C), 30883223(c.-5137C>T), 30883247(c.-5161T>A), 30883363(c.-5277G>C), 30883371(c.-5285T>C), 30883682(c.-5596A>T), 30884385(c.-6299T>C), 30884387(c.-6301T>G), 30884401(c.-6315G>T), 30884412(c.-6326A>G), 30884425(c.-6339C>T), 30884445(c.-6359T>C), 30884491(c.-6405T>C), 30884663(c.-6577T>G), 30884946(c.-6860G>C), 30884984(c.-6898C>T), 30885023(c.-6937A>G), 30885032(c.-6946C>G), 30885045(c.-6959C>G), 30885050(c.-6964A>G), 30885263(c.-7177G>C), 5'UTR 30879229(c.-56C>T), 30879308(c.-135C>T), CDS 30877825(c.56G>A), 30877837(c.44T>C), 3'UTR INTRON 30877956(c.37+94A>G), 30877963(c.37+87G>C), 30877998(c.37+52A>T), 30879102(c.-22+93C>T), 30879112(c.-22+83A>G), 30879138(c.-22+57G>A), 30879534(c.-167-194T>C), 30879587(c.-167-247G>A), 30879635(c.-167-295C>G), 30879663(c.-167-323A>G), 30879776(c.-167-436G>T), 30879791(c.-168+445T>C), 30879839(c.-168+397G>A), 30879850(c.-168+386T>C), 30880156(c.-168+80T>A), -1kb 30873316(c.4418C>G), 30873328(c.4406G>A), 30873558(c.4176T>C), 30873906(c.3828G>T), 30874304(c.3430C>G), 30874327(c.3407T>C), 30874365(c.3369C>T), 30874888(c.2846T>A), 30875102(c.2632A>C), 30875266(c.2468T>C), 30875407(c.2327T>A), 30875515(c.2219A>T), 30875553(c.2181C>T), 30875758(c.1976G>A), 30875892(c.1842A>G), 30876024(c.1710T>C), 30876030(c.1704A>G), 30876042(c.1692G>A), 30876052(c.1682A>G), 30876063(c.1671A>C), 30876080(c.1654G>A), 30876310(c.1424G>A), 30876356(c.1378A>G), 30876605(c.1129T>C), 30876625(c.1109C>T), 30876670(c.1064T>C), 30876821(c.913C>G), 30876826(c.908G>A), 30877115(c.619C>T), 30877157(c.577A>G), 30877557(c.177A>T), 30877583(c.151G>A), 30877592(c.142T>C), 30877594(c.140T>C), 30877654(c.*80C>A),
Insertions	+1kb 30881398 (c.-3313_-3312insTATA), 30882111 (c.-4026_-4025insC), 30882113 (c.-4028_-4027insC), 5'UTR CDS 3'UTR INTRON -1kb 30874252 (c.3479_3481dupAGC), 30874507 (c.3226_3227insCT),
Deletions	+1kb 30880886 (c.-2805_-2801delACACT), 30881323 (c.-3241_-3238delCACT), 30881943 (c.-3858delT), 30881945 (c.-3860delT), 30882054 (c.-3970_-3969delCT), 30882275 (c.-4192_-4190delCTC), 30884035 (c.-5951_-5950delCC), 30884062 (c.-5977delA), 30884079 (c.-5998_-5994delAAAAC), 30884099 (c.-6018_-6014delAAAAC), 30884472 (c.-6391_-6387delTGGGA), 30884875 (c.-6790delA), 30885267 (c.-7182delG), 5'UTR CDS 3'UTR INTRON 30879749 (c.-167-410delT), 30879929 (c.-168+306delA), -1kb 30874119 (c.3609_3614delACAAGT), 30874444 (c.3284_3289delTTTTTT), 30874965 (c.2768delT), 30876922 (c.808_*811delCACT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	2
synonymous substitutions
non-synonymous substitutions	30877825 (p.Arg19Gln), 30877837 (p.Val15Ala),
B6 transcript (ENSMUST00000190753)	MRVHYLWLLLILGHVASARYSSANDWTVDHPQTLFAWEGACIRIPCKYK
MSMv4 transcript	MRVHYLWLLLILGHAASAQYSSANDWTVDHPQTLFAWEGACIRIPCKYK
homology	95.92 (49 / 49)

Exon Detail Report

Gene Symbol (Gene ID)	Cd22 (ENSMUSG00000030577)
Transcript ID	ENSMUST00000190753

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ACAAAAACACACAACACAAACATATACAACACTCAAATACACATAATATA CAAACACACACTCTCACATGCCACACACATACCATATACATATACACTCACAAATACACA CCACAGACACCACAGACATACTACACACACCACACACATACACATGTACACACACACCAC ATATGCATAACACACACAAACACACACAACACTCAAAAACATACAACACAAACACACAAA CATGCACAACACTCAAATATACAAACACACACACAACACACACATATACACAAACATAAC ACTCACCTGACACACAAACACACACATACAAATATACACTTGAACACACACAATGCTCAA ATACACAACACACACATATACACACACACACTCATGCGTCTTGACACGATCACATATAAA TAAAAAGGGAGTAAAGAGTTCCCATTCAGCAAATCTTTCTTCCCCAGAGCTCTGGTCCTC CCCTCGCCCGTGGAGCTGCTAAGGTATTCACGTCAGTGCTAGATCACTCTGCTCCTGCCT TCGGTGGGATTGCTAGCAATAAGATGTATCAGCAAGCGAAAGCCACCTTCAAGAAGACCT GTTCCTTCCCCAGCCAGCTGGGAGCTCTAGCTCTGGGAAGAAGGTTTGCTGAATGGGAAG TCTTTTACTTCATTATTACTTATTTGTGATGGCGCCCAGGTGCATGAGTATATATGTGTG TGTGTGTGTGTGTATGTGTGTGTGTTTGATTATTGTGTGTTCAGGTATGTATTTGTGTGT TGTCTGGCTCTAGGGAGCCTGGACAAACTAGCATGGAAATTCATCAGACATGGAAGACAC CCAAGCCAACACGTGACTGCAGAGAATCAATCTGACTCCAAACTTGTGTTCTCCACCACG GCCTCTCATCCACACCCTATCTGCTGGTCTCTCGCAGAGGCCCAGAGAGGAAGGGGGCGT GGCCAAGCGTGTGAGACTTTTCTTAGTTTTCTTACTCTCAGATCCTGCTA
1	EXON 1	30880236	30880268	-	-	33	GGGATCCTGAAGATCGAACACAGGAGGAAACAG
	INTRON 1 - 2	30879341	30880235			895	GTAAAACCATTTCAATCTTTTCTCT..........CCACAAACCTCTTATATACACCCAG
2	EXON 2	30879195	30879340	-	-	146	GCCACACCACCCCCAACCGTGGAGGCAGAACCTAGCCCACGCTCAGCAACTGAACTGGCT TTCCCTACACCTGTTCCTGGTCACCCAGAAGTCCTTACTACCTGTGCCCTGTGGCCTGGG AGAGAAATAGCAGGAGAGAGAGGGAG
	INTRON 2 - 3	30878108	30879194			1087	GTGAGGATGCTGTGCAAGGTATGGG..........TACAGACTAATTCTTCCTTCTTTAG
3	EXON 3	30878050	30878107	-	1	58	GTCCCACCCAGACGAGACACCATGCGCGTCCATTACCTGTGGCTCCTCTTGATCCTAG
	INTRON 3 - 4	30877844	30878049			206	GTAAGTGCTGAGGCCCAGGCTGGTA..........TTCTGACCAGAGTTGTGGCCTTTAG
4	EXON 4	30877734	30877843	1	-	110	GACACGCGGCTTCGGCTCAGTACAGCTCAGCAAATGATTGGACCGTTGACCATCCCCAAA CCCTCTTTGCCTGGGAGGGAGCCTGCATCAGGATTCCTTGCAAGTACAAA
	3' upstream sequence						ACTCCACTACCCAAGGCACGTCTGGACAACATCCTCCTTTTTCAGAACTATGAGTTTGAC AAGGCCACCAAGAAATTCAAAGGAACTGTCCTGTACAACGCCACAAAGACTGAGAAGGAC CCAGAGTCTGAGCTGTACCCTCCTAAGCAAAGGAGAGTAACATTTCTGGGGAACAGTATA GACAATTGTACCCTGAAAATCCACCCGATACGTGCCAATGACAGTGGGAATCTGGGGTTG AGGATGACCGCAGGGACTGAACGATGGATGGAGCCCATTCACCTCAATGTCTCGGGTAAG GCATGGGGAGACAGCCAACTGTTCTAGCGGCAGCAAAGAGGGACCTGCTCAAACCCTGGA GCAAACAGCCAAGGTGCCTATTTAACATATTAAAGAGGGCCTGGCACCAGATTCTCCCAG CATCCCTCAGTCCCTACCTATTACAAAGAATGGCTGGCTCCTGGCCCCCACTCTCTAGCC CATCTCCCCAGCCCAAGAGCCGGGCTGCCCCTCCCCCAGGCTCTTCCCTATATAATCCAG CCATCTGGGTAGCCCACCCTCTTTTACCTCTAGCCCGTTTCCTTGGCTGCTGTACCTGGT TCCCCTCTCCCACCCTTCTTCACCTGGCTCGGGGTCATATCCACTCTGGACTCTCCCAGA TGTGCCTGCCTCTGGCTATGTTCTCCCTTTTATCTACAATATAATTTCTCTTCCACCACA CCTAGGAGCAATCATGTTCTTTCCTTTTTATTTCTCCTTTTCATTTGCTCACCAAATAGG AAGCTTTGATGCACACACACACACACACACTCACTCACTCACATAACTCTCTCACACACA CACAGCCAACTGCAGCATGAGCAATTGTCCTACCTCAGGCTTTCTCTCCTCAGCTTGTGT CTGTTCTAGAATGCGTTGTCGAGGCTCTCAGGTTTTCTGAAGCTTTCCAAAGCAGAGAGA GGTCTGGATTTTCAAATCTCTCAGTGTGTTAATGACCAAA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cd22 (ENSMUSG00000030577)
Transcript ID	ENSMUST00000190753

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 49 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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