MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Sox17 (ENSMUSG00000025902)

Cross Reference

EMBL	AC129937
GO	GO:0000122, GO:0000981, GO:0001228, ...show all
goslim_goa	GO:0000003, GO:0000902, GO:0000988, ...show all
MGI_trans_name	Sox17-003
OTTP	OTTMUSP00000068699
OTTT	OTTMUST00000127248
UCSC	uc007aez.2
UniParc	UPI00053BD863
Uniprot/SPTREMBL	A0A0A6YWS4
Vega_transcript	OTTMUST00000127248, Sox17-003

Vega_translation

178604, OTTMUSP00000068699

Definition

protein_id:ENSMUSP00000141674
translation:

MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSPLGDVKVKGEVVASSGAPAGTSG
RAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
AERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALVEPQAGALGP

Chromosome

1

Length
Position(start - end)

938
4492467 - 4493406

Orient to Chromosome

minus

Link

Location : (1:4492467-4493406)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Sox17 (ENSMUSG00000025902)
Transcript ID	ENSMUST00000192913

Reports
substitution
cSNPs	0
Insertion	9
Deletion	10
SNPs	+1kb 4496594(c.-3188T>C), 4496940(c.-3534G>A), 4497075(c.-3669A>C), 4497083(c.-3677G>T), 4497196(c.-3790A>C), 4497266(c.-3860C>T), 4497358(c.-3952T>G), 4497370(c.-3964G>A), 4497394(c.-3988C>T), 4497411(c.-4005A>T), 4497507(c.-4101C>G), 4497569(c.-4163T>C), 4497579(c.-4173G>A), 4497612(c.-4206T>G), 4497710(c.-4304T>C), 4497981(c.-4575A>T), 4498374(c.-4968A>G), 4498427(c.-5021T>A), 4498537(c.-5131C>G), 4498625(c.-5219T>C), 4498644(c.-5238G>C), 4498652(c.-5246C>T), 4498670(c.-5264T>C), 4498700(c.-5294A>G), 4498713(c.-5307G>T), 4499088(c.-5682T>C), 4499214(c.-5808C>T), 4499269(c.-5863G>A), 4499303(c.-5897G>C), 4499392(c.-5986T>A), 4499454(c.-6048A>G), 4499674(c.-6268T>C), 4499851(c.-6445G>A), 4499863(c.-6457A>G), 4500315(c.-6909C>A), 4500321(c.-6915C>A), 4500375(c.-6969A>G), 4500864(c.-7458A>G), 4500882(c.-7476G>A), 5'UTR 4495473(c.-422T>C), 4495498(c.-447A>T), 4495745(c.-694A>T), CDS 3'UTR INTRON 4492927(c.307+173T>C), 4492987(c.307+113C>T), 4493023(c.307+77G>T), 4493531(c.-84-41A>C), 4493559(c.-84-69A>G), 4493750(c.-84-260C>T), 4493773(c.-84-283A>T), 4493799(c.-84-309C>A), 4493886(c.-84-396T>A), 4494062(c.-84-572C>T), 4494118(c.-84-628C>T), 4494357(c.-85+779C>T), 4494362(c.-85+774C>T), 4494371(c.-85+765A>C), 4494386(c.-85+750G>C), 4494410(c.-85+726C>G), 4494466(c.-85+670C>T), 4494640(c.-85+496G>T), 4494739(c.-85+397C>T), 4494814(c.-85+322A>G), 4494823(c.-85+313C>T), 4494855(c.-85+281T>C), 4496216(c.-892+75T>C), -1kb 4487467(c.5000G>A), 4487473(c.4994T>A), 4487567(c.4900C>A), 4487649(c.4818G>A), 4487733(c.4734A>G), 4488043(c.4424C>T), 4488052(c.4415G>T), 4488063(c.4404A>T), 4488081(c.4386G>T), 4488122(c.4345T>A), 4488256(c.4211T>G), 4488270(c.4197C>A), 4488272(c.4195C>T), 4488306(c.4161C>T), 4488375(c.4092A>G), 4488472(c.3995G>C), 4488475(c.3992T>C), 4488511(c.3956T>C), 4488589(c.3878A>G), 4488654(c.3813C>T), 4488734(c.3733G>C), 4488856(c.3611T>C), 4488974(c.3493C>T), 4488975(c.3492T>A), 4489060(c.3407C>T), 4489077(c.3390T>A), 4489133(c.3334A>G), 4489134(c.3333C>T), 4489166(c.3301A>G), 4489210(c.3257G>A), 4489519(c.2948A>G), 4489686(c.2781A>G), 4489733(c.2734T>G), 4489754(c.2713C>T), 4489770(c.2697T>C), 4489779(c.2688T>G), 4489800(c.2667G>C), 4489960(c.2507A>G), 4490067(c.2400T>A), 4490133(c.2334T>G), 4490174(c.2293T>C), 4490178(c.2289C>G), 4490237(c.2230A>G), 4490345(c.2122G>T), 4490510(c.1957A>T), 4490807(c.1660T>A), 4490812(c.1655G>A), 4491046(c.1421C>T), 4491076(c.1391C>T), 4491301(c.1166T>C), 4491501(c.966T>C), 4492343(c.124T>G),
Insertions	+1kb 4497257 (c.-3852_-3851insTTCTC), 4497474 (c.-4069dupG), 4500540 (c.-7135_-7134insTAG), 4500883 (c.-7478_-7477insA), 4501227 (c.-7822_-7821insTA), 5'UTR CDS 3'UTR INTRON 4494165 (c.-84-676dupT), 4494925 (c.-85+210_-85+211insGAA), -1kb 4487519 (c.4947_4948insTCT), 4487567 (c.4899_4900insTAA),
Deletions	+1kb 4499380 (c.-5975delT), 4501366 (c.-7961delA), 5'UTR 4495655 (c.-606_-605delTT), 4495828 (c.-781_-778delAAAA), CDS 3'UTR INTRON 4494552 (c.-85+583delC), -1kb 4488356 (c.4109_4110delCT), 4489111 (c.3355delT), 4489369 (c.3097delG), 4490090 (c.2374_2376delGTT), 4491386 (c.1079_1080delTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000192913)	MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSPLGDVKVKGEVVASSGAPAGTSG RAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE AERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALVEPQAGALGP
MSMv4 transcript	MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSPLGDVKVKGEVVASSGAPAGTSG RAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE AERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALVEPQAGALGP
homology	100.00 (169 / 169)

Exon Detail Report

Gene Symbol (Gene ID)	Sox17 (ENSMUSG00000025902)
Transcript ID	ENSMUST00000192913

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGTCCCCGAAGTTAATCTTGGGGTCAAACGTTCTCAGCGCTCACGGGAGA GGCTAGCAAAGCGAAGATTGCAGGGTCTGGCCTGAATGTTCTGGGCCACCGTGGGGGCCG GTGATCACTGTCTTTCTTGCCACTCTTTCCTCTCAAGTTCCCGAATTTCCATCTCCACCT CCGACCCACTGGGGACTGACCAGGGACTGGCAAGAGCGCGAAAGGTATAAAGGGGAGAAG AGACTGCGCCTTTTGGTGCCCGGGTGAAAGGTGCCAATCGACCGCATCGCTCTGCGTGGC CCTACCTGGGAGGTGCGGAGCCCTGGGCACGCCGCTCGGTGTTCTCAGAGGCAGACTCTG AGGCACGTATTTTAGACCGTCCAGTGGTACTATTGTCTCTGTTATCTTAGAGTCCGCCGG GGGCTGTCTCCGTGATGACAGCCCACGCTCCCTTTTCCGCCCTCATAAACTTGCTCTCCA CAGACCACGGATCTGCTTGAGTGCCCACGGATCCTGTGCAATTGGACTTGAATGTCCTTT AACAGGCCTTGGCCATCAGAACACCAAAACCATAAAACCTTCGAGAAATCAACCACTCAC TCTGAGGCTCGCTGTAGAAGAGTGGCTTAGACTCTCCCACTTCGGAGTCCCAGTTGATCA CCAACCCGCTTGCTACAGGCCCCAAATGGTTACGGGCACAGCTTCTAGTTACATTAGACG CTTCCTTGCCCCAGCCTTTCGAGCCTCAGGTCTGCTTTGGGGATGTGGCTTAGGCAGTAG CCACCTAGAAATCCTGCACTGTTTGAGTGTGACACCGCTGCGGACTACAGCAGACAGGCG TGCCAGGCTTCTAGTCCAGATACCCACCCCCACCCCAGTAAATCTCTAGTGTTGAGGGAA GCAAGGCTTGCAGGAAGCCGCTCCGGATGTTTGCTTCTTTACTTGTGGCATTTGTGGCTG GCTTTGATAACGTCGTGAGCTCGGCTTCCAACACCCATTTAGTGAAGAAA
1	EXON 1	4496291	4496396	-	-	106	CTGAAATATGGCCCACTCACACTGCTGGCGGGTCTGAAGTGCGGTTGGCCCCAACACTCC TCCCAAAGTATCTATCAAGAGAATGGTCAGCAGAAGTTAGATCTAG
	INTRON 1 - 2	4495943	4496290			348	GTAAGAGGACGGGAAGGGGGACTAG..........GAATTATATTTCTGTTGTCTCTTAG
2	EXON 2	4495136	4495942	-	-	807	TTTTTAGAGAAATCAACCAAGACAGGGAAGACAGAGAAAATGCATTCTGGACCCGCTACT GTTTTCAATCGTCATTTCAAACAAAACCCGTAGTTTATTTAAAAAAAAAAAAAACACGGA AAGAGAAAATTAGGCCCTGAGATCTTTGAAAAGATGCCCATTACTAGATACAAAAGAGAA GAGTCACTGTGGAGGTGTGGGACTGCGTCCCTGCTTCTGAGAGGCAGGAGAGCTACATGG GGAGACTGTCTCAAAACTAACAACAGAAGAGATAGAATTTTTTTTTTCTTAAAGAGCACC TGGCTAGAGAATCGATTTGTAAAATTGCTATTTCTACCCTTAGAGTTTCCTTGATTAAAC ATCTGAAATGCATTTTTTTTGTTTTACTTTCAAGCTAATGTTTTTCAGAAAAAAATAAAA AGCTTTGAGGAAAAGCACATTATCTGTTAGATTTAAGACCAATTGCTTTCAAATTACCAA TTTAAAATATCATTTTTTTTATTTCTTAAAGCAGATTTAATTTTACCCCCTTTGTATGAA TCTTACAGACCTGGAGTTTTAACTACTATCACTGATCTCTACACACAACCTCCAGCTTTA AATGGGAGGGAGGGTCACCACTGCTTTATAACATAACAAATTAGAGAAAAGCTGGCTTCT GTATGAGTTCTTTGGAGACAAAGTAGCTCCAGAAACTGCAGACCAGAAGCTATCAAAATC TCTGTGCTTTTTTGGAACCTCCAGTAAGCCAGATTTGGTCTCTGAAATAATACAGGAAAA CCTCAGCATGTCACCTCATGGATACAA
	INTRON 2 - 3	4493491	4495135			1645	GTAAGTAATACTTTTCAATCAGCTA..........TACGAGTTCCTCTGGGCATCTCCAG
3	EXON 3	4493100	4493490	-	1	391	GCTAGCTTCCGATCCCTGCCTCAGGGTCGGGGGAAGCGGCGTGTCCCGTGGCCATAGCAG AGCTCGGGGTCGGTCTGGAGAGCCATGAGCAGCCCGGATGCGGGATACGCCAGTGACGAC CAGAGCCAGCCCCGGAGCGCGCAGCCCGCGGTGATGGCAGGGTTGGGCCCCTGTCCCTGG GCCGAGTCCCTGAGCCCCCTCGGGGATGTAAAGGTGAAAGGCGAGGTGGTGGCGAGTAGC GGGGCGCCAGCCGGGACGTCGGGCCGAGCCAAAGCGGAGTCTCGCATCCGGCGGCCGATG AACGCCTTTATGGTGTGGGCCAAAGACGAACGCAAGCGGTTGGCACAGCAGAACCCAGAT CTGCACAACGCAGAGCTAAGCAAGATGCTAG
	INTRON 3 - 4	4492669	4493099			431	GTGAGTCGGACCAGGGGGATACAGG..........CGCGCCTCTCCACCTTTCCCTGCAG
4	EXON 4	4492467	4492668	1	-	202	GCAAGTCTTGGAAGGCGTTGACCTTGGCAGAGAAGCGGCCCTTCGTGGAAGAGGCCGAGC GGCTGCGCGTGCAGCATATGCAGGACCACCCCAACTACAAGTACCGGCCGCGGCGGCGCA AGCAGGTGAAGCGCATGAAGCGGGTGGAGGGAGGCTTCCTGCACGCTCTCGTCGAGCCCC AGGCCGGCGCGCTTGGTCCCGA
	3' upstream sequence						GGGCGGCCGCGTGGCCATGGATGGCCTGGGTCTGCCTTTCCCGGAGCCGGGCTATCCGGC CGGTCCTCCGCTGATGTCTCCGCACATGGGCCCCCACTATCGGGACTGCCAGGGACTGGG CGCGCCCGCGCTCGACGGCTACCCTCTGCCCACTCCGGACACATCCCCGCTGGATGGCGT GGAGCAGGACCCGGCTTTCTTTGCAGCCCCGCTGCCAGGGGACTGCCCGGCGGCCGGCAC CTACACTTACGCTCCAGTCTCGGACTATGCAGTGTCCGTAGAGCCGCCCGCTGGCCCCAT GCGAGTGGGGCCGGACCCCTCGGGCCCTGCGATGCCGGGGATCCTGGCGCCCCCCAGCGC TCTGCACCTGTACTACGGCGCGATGGGCTCGCCCGCCGCAAGTGCGGGGCGCGGTTTCCA CGCGCAACCCCAGCAGCCGCTGCAACCGCAGGCACCGCCGCCGCCACCGCAGCAGCAGCA CCCAGCGCACGGCCCCGGGCAACCTTCGCCCCCTCCCGAGGCTCTGCCCTGCCGGGATGG CACGGAATCCAACCAGCCCACTGAGCTCCTAGGGGAGGTGGACCGCACGGAATTCGAACA GTATCTGCCCTTTGTGTATAAGCCCGAGATGGGTCTTCCCTACCAGGGACACGACTGCGG AGTGAACCTCTCAGACAGCCACGGAGCCATTTCCTCCGTGGTGTCCGACGCTAGCTCAGC GGTCTACTATTGCAACTACCCCGACATTTGACGGTTGCCGACCCGACCTGAGGGCCAGAA GCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTT TTAAGTTGCCTTGGCATATAATTTATGGTAATTTATTTTGTCTGCCACTTGAACAGTTGA GGGGCTACACGAGATTTTTGTTTTAAATGCCTTGAGGGACTTGCTCCCCACAATCACTGT CCAGTCTTAGCCAGTTTTAAAATATCTCACTGACTTATTC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Sox17 (ENSMUSG00000025902)
Transcript ID	ENSMUST00000192913

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 169 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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