MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Srrt (ENSMUSG00000037364)

Cross Reference

MGI_trans_name	Srrt-016
OTTP	OTTMUSP00000071564
OTTT	OTTMUST00000135109
UniParc	UPI000620AC99
Uniprot/SPTREMBL	A0A0G2JG75
Vega_transcript	OTTMUST00000135109, Srrt-016
Vega_translation	195837, OTTMUSP00000071564

Definition

codon_start:2
protein_id:ENSMUSP00000143454
translation:

XKANDKDEKKEDGKQAENDSSNDDKTKKSEGDGDKEEKKEEAEKEAKKVRST

Chromosome

5

Length
Position(start - end)

1137
137298871 - 137300009

Orient to Chromosome

minus

Link

Location : (5:137298871-137300009)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Srrt (ENSMUSG00000037364)
Transcript ID	ENSMUST00000199365

Reports
substitution
cSNPs	1
Insertion	5
Deletion	10
SNPs	+1kb 137300021(c.-13A>G), 137300238(c.-230G>A), 137300341(c.-333G>A), 137300598(c.-590T>C), 137300734(c.-726T>A), 137300988(c.-980C>T), 137302215(c.-2207A>G), 137302346(c.-2338A>G), 137302416(c.-2408G>A), 137302715(c.-2707T>C), 137302944(c.-2936A>C), 137302971(c.-2963G>A), 137303120(c.-3112T>C), 137303138(c.-3130A>G), 137303211(c.-3203G>T), 137303232(c.-3224G>A), 137303272(c.-3264C>G), 137303430(c.-3422T>C), 137303611(c.-3603T>G), 137303614(c.-3606T>C), 137303657(c.-3649C>A), 137303723(c.-3715C>T), 137303779(c.-3771G>T), 137303846(c.-3838G>C), 137303884(c.-3876G>T), 137303908(c.-3900A>G), 137303910(c.-3902T>G), 137303911(c.-3903T>C), 137303958(c.-3950C>T), 137303976(c.-3968G>A), 137303977(c.-3969T>C), 137303990(c.-3982C>T), 137303993(c.-3985A>G), 137304028(c.-4020C>G), 137304065(c.-4057G>A), 137304162(c.-4154T>G), 137304593(c.-4585A>T), 137304646(c.-4638T>C), 137304743(c.-4735C>T), 137304788(c.-4780C>T), 137304862(c.-4854A>T), 137304873(c.-4865C>T), 137304987(c.-4979C>T), 5'UTR 137298423(c.175A>T), CDS 137299773(c.122C>T), 3'UTR INTRON 137298025(c.287-38G>A), 137298135(c.286+93G>A), 137298225(c.286+3G>T), 137298514(c.146-62G>A), 137298976(c.147-96T>G), 137299158(c.147-278A>G), 137299165(c.147-285C>T), 137299225(c.147-345C>T), 137299481(c.146+268G>A), 137299559(c.146+190C>T), 137299736(c.146+13T>C), 137299934(c.42+33T>C), -1kb 137292904(c.5967T>A), 137292905(c.5966A>G), 137293042(c.5829C>G), 137293961(c.4910A>G), 137294099(c.4772C>G), 137294561(c.4310C>A), 137294582(c.4289G>T), 137294624(c.4247G>T), 137294906(c.3965A>G), 137295392(c.3479G>A), 137295451(c.3420G>A), 137295530(c.3341C>T), 137295840(c.3031C>T), 137296176(c.2695C>G), 137296255(c.2616A>G), 137296525(c.2346C>T), 137296606(c.2265C>G), 137296635(c.2236C>T), 137296734(c.2137A>G), 137296874(c.1997A>G), 137296928(c.1943A>G), 137296989(c.1882T>C), 137297075(c.1796C>T), 137297092(c.1779T>C), 137297278(c.1593C>T), 137297282(c.1589G>A), 137297358(c.1513A>G), 137297614(c.1257T>C), 137297657(c.1214T>A),
Insertions	+1kb 137301738 (c.-1731dupT), 137303615 (c.-3608_-3607insA), 137304526 (c.-4519_-4518insTCT), 137304716 (c.-4709_-4708insTT), 5'UTR CDS 3'UTR INTRON 137299131 (c.147-252_147-251insAA), -1kb
Deletions	+1kb 137301278 (c.-1272_-1271delCT), 137303697 (c.-3692_-3690delTTT), 137303726 (c.-3721_-3719delGAG), 137303929 (c.-3923_-3922delCA), 137304132 (c.-4125delT), 5'UTR CDS 3'UTR INTRON 137298986 (c.147-110_147-107delTGTC), 137299720 (c.146+28delG), 137299738 (c.146+10delG), -1kb 137293043 (c.5827delA), 137293739 (c.5129_*5131delAAA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	1
synonymous substitutions
non-synonymous substitutions	137299773 (p.Ala41Val),
B6 transcript (ENSMUST00000199365)	KANDKDEKKEDGKQAENDSSNDDKTKKSEGDGDKEEKKEEAEKEAKKVRST*
MSMv4 transcript	KANDKDEKKEDGKQAENDSSNDDKTKKSEGDGDKEEKKEEVEKEAKKVRST*
homology	98.08 (52 / 52)

Exon Detail Report

Gene Symbol (Gene ID)	Srrt (ENSMUSG00000037364)
Transcript ID	ENSMUST00000199365


..........TCTGCCCAGATCCTAACCCTCTAGCCCTCTTCTATCCCATGGCCTACCTG
AGGCTGTGCAGGCACTTGGCCTCTTTCTTTGCTCTTTCCTGCCCCTCTGCCTTTTCTTCC
TTCGAGGGGAGAAAGGTGTCCTGCCTTTTGGCCTTTTCTATCTGGTACACTTGAGGTTTC
CTTCTGGCTCCACCTGGGGTGGAGGGAGTTGGTGGGAACCTCATCTGGGCTTGGCCAGGA
GAGGGAGGTTCTCTGGGGCTCCTGCTCCCTCAGCTTTTCTGAAGCAATGGGAAAGGGCAC
CTTCTCAGCCTAGTGCTTCCCAGAGGCTCACAGCAGTAGAGCTGCCTCATAACCCTGGCC
TTCCCCAGAGCCATGGTCCTCCTAACCCAGAGCTCTCAATTCCTGGTTCTCCCCAGATCT
TCCCAGAGTACGACCTCTGGTTCCTTTTGGGGTGTTGGGTGGTTTTAGTGCACCCCTTTC
TTGATTTTAAGACCTTCTGTGGGTGTGAGAGGCTATGCCCTGCCTTTCTTGGGCCCCTCC
CCACATTCTGGTCTTGACTGCTCGTAACTGTTTTGTCTCTCCCATCCTGCTTGCTTTCTT
GTCCAGGTTCCGATCTAAGTACCACCCTGATGAGGTGGGAAAGCGTCGGCAGGAGGCCCG
GGGGGCCCTGCAGAACCGACTGAAGGTGTTCCTGTCCCTCATGGAGAGTGGCTGGTTTGA
TAACCTTCTCTTGGACATAGACAAAGCTGATGCCATTGTCAAGATGCTAGATGCAGGTAT
GAGCTTAAAGGGTAGGGAGGTCTTGGCTGGGAGGTTACAGAATAGAAATCAGAGCCTTTG
GGTTGTGACCTGCTGTTGTCATTGGTAGCTGTCATTAAGATGGAAGGTGGCACAGAGAAC
GATCTCCGAATTTTGGAGCAGGAGGAGGAGGAGGAACAGGCAGGCAAGACTGGGGAGGCC
AGCAAGAAAGAGGAGGCCCGTGCTGGACCAGCCCTGGGGGAAGGAGAGCG
CAAAGCCAATGATAAGGATGAGAAGAAAGAAGATGGAAAACAG
GTCGAGGGGCAGAGGCTGAGGGAGC..........TGACATTGTCAGAACTATCTCATAG
GCTGAGAATGACAGTTCCAACGATGACAAAACTAAAAAATCTGAGGGTGATGGGGACAAGGAGGAGAAGAAAGAAGAGGTTGAGAAGGAAGCCAAAAAGGTAAG
GTGTGTTTTGCATGAGACCAAGATG..........GTACTGGTTACTTCTTGCTTAGAAG
AAGCACTTAAAGAAAAGGAGAAGCCCAAAGAGGAGGAGAAGGAGAAGCCTAAGGATGCTGCAGGGTTGGAGTGTAAGCCCCGGCCCTTGCATAAGACTTGCTCTCTCTTCATGCGCAACATCGCACCCAACATTTCAAGGGCAGAGATCATTTCT
GTGAGTGGGGACATCGGTCTTAGGG..........CCCTTGATTCTTTTGACTCTTGCAG
CTTTGTAAACGATACCCAGGCTTTATGCGTGTGGCACTGTCAGAGCCCCAGCCAGAGAGGAG
GTAAGAAGCTGCACACCTTGGGATG..........AGTGCTGATAAACTTTGTTATGTAG
GTTTTTTCGCCGTGGCTGGGTGACTTTTGACCGCAGTGTTAACATTAAGGAGATCTGTTGGAACCTGCAGAACATTCGG
GTTAGTGTTGGGAGCGGGGCTATAG..........CTCCTTGTTAATTATGTCTCTATAG
CTCCGGGAGTGTGAACTGAGTCCCGGTGTGAACAGAGACCTGACCCGTCGTGTCCGCAACATAAATGGCATTACACAGCACAAGCAGATAGTGCGCAATGACATCAAGTTGGCAGCCAAGCTAATCCACACACTGGATGACAGGACCCAGCTCTGG
GCCTCTGAGCCTGGGACGCCTCCTGTGCCCACAGTCAGTGACTCCCAGGGGATGGTTTCT
AGTGTACCCAATGGTTCCTTGTGCTACCCCTGACCTCATCTGCTTGTTTTCCTGATCCCT
GGGTCCTATCCATAACCTCCTTTGTTTGCCCCTTTGTCTGGATGCTACCTCCTCAAGCTT
CCAACAGCATAGTCATTTGTGGGTTAGGATGGACGAACGAGATTAGGAGACAGGGTTTGT
CCGTGATGCTGATCCTGTCTTCATGGCCCAGTTTCTGCGCTGATTTCTCTGCCTTACTGT
CCATGTCCTCCTCGCTAGAGCCTCCCCTCGCAAAACCCCATCCTGAAGAACATCACTGAC
TACCTGATTGAGGAAGTGAGTGCGGAGGAGGAGGAGCTTCTGGGGAGCAGTGGGGGACCC
CCTCCTGAGGAGCCTCCCAAGGAGGGCAACCCAGCCGAGATCAACGTGGAGAGGGATGAG
AAGCTGATCAAGGTGCCAGTTCCGACCATCTGGAGCATGCGTCCAGGGGAGTGCGGCATG
CGGCTTTCTATATTGGGGCTGAATAGTGACCTTGTGTGTCCACCCTCCCCGCCCCCCAGG
TCTTGGATAAACTTCTTCTCTATTTGCGTATTGTGCATTCTCTGGATTATTATAACACCT
GTGAGTACCCTAATGAAGACGAGATGCCCAACCGCTGTGGCATAATCCACGTTCGGGGGC
CCATGCCTCCCAACCGAATCAGTCACGGAGAAGGTATGTTGCAGGTCCCTCATGTTGTCT
TTCATGGCCAACCTCTGTCTACTGTCCCTCCTCTTCCCCCTTGCTCCAGTCTCCCTCTCA
GCCTGCCTTTGTCACCCACACAGTGCTGGAGTGGCAGAAGACATTTGAGGAGAAACTGAC
TCCGCTGTTGAGTGTGCGTGAATCCCTTTCTGAGGAAGAGGCCCAGAAGATGGGTCGGAA
AGACCCAGAGCAGGAAGTGGAGAAGTTTGTCACCTCCAAC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Srrt (ENSMUSG00000037364)
Transcript ID	ENSMUST00000199365

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 52 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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