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Target CDS Information

Gene Symbol (Gene ID) Gusb (ENSMUSG00000025534)
Cross Reference
MGI_trans_name Gusb-006
OTTP OTTMUSP00000072602
OTTT OTTMUST00000137996
RefSeq_mRNA_predicted XM_006504342.1
RefSeq_peptide_predicted XP_006504405.1
UCSC uc008ztt.1
UniParc UPI00001942FA
Vega_transcript Gusb-006, OTTMUST00000137996
Vega_translation 195525, OTTMUSP00000072602
Definition protein_id:ENSMUSP00000144478
translation:
MSLKWSACWVALGQLLCSCALALKGGMLFPKESPSRELKALDGLWHFRADLSNNRLQGFE
QQWYRQPLRESGPVLDMPVPSSFNDITQEAALRDFIGWVWYEREAILPRRWTQDTDMRVV
LRINSAHYYAVVVSQGLLCPGHKL

Chromosome 5
Length
Position(start - end)
2784
130000031 - 130002816
Orient to Chromosome minus
Link Location : (5:130000031-130002816)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gusb (ENSMUSG00000025534)
Transcript ID ENSMUST00000201801
Reports
substitution
cSNPs2
Insertion23
Deletion27
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 130002643 (p.Gly58Gly), 130002655 (p.Asn54Asn),
non-synonymous substitutions
B6 transcript
(ENSMUST00000201801)
MSLKWSACWVALGQLLCSCALALKGGMLFPKESPSRELKALDGLWHFRADLSNNRLQGFE
QQWYRQPLRESGPVLDMPVPSSFNDITQEAALRDFIGWVWYEREAILPRRWTQDTDMRVV
LRINSAHYYAVVVSQGLLCPGHKL*
MSMv4 transcript
MSLKWSACWVALGQLLCSCALALKGGMLFPKESPSRELKALDGLWHFRADLSNNRLQGFE
QQWYRQPLRESGPVLDMPVPSSFNDITQEAALRDFIGWVWYEREAILPRRWTQDTDMRVV
LRINSAHYYAVVVSQGLLCPGHKL*
homology100.00 (145 / 145)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gusb (ENSMUSG00000025534)
Transcript ID ENSMUST00000201801
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CAAATCAAAACGAACCAAACAAAAACATTCTTTAGGGAACTTCCTTTTGG
CTCAGTCTGAAAATCCAAATGCACACCTTGGGGTGGTTGTATCTTTAGTTCAACTCAAAG
ATTTAGGTTGAAACCTAAATGATATTTACCTCCGTTTTAAGAACTGGAAACTAACCAGGT
GGCATATGCCTTTAGTCCCAGCACTCAGGAGGCAGAGGCAGGAGGTATCTCTGTGATTTT
GAGCCTGGTCTACAGAGTTCCAGGACAGCCAAGGCTTCAAGACTCGCTTAGCTGTATATG
TACTTGCCCAAGAGTGAAATCTGAGCACTGTTAGCTCAAGCCTGTTAGCTAGAGGGGCTA
GAGTGATGGATTGGGGGTGGGGGTGGGGTGAGAGTTACTAAGACCACTTTCAGAGAACGG
CTGCTGCAGGTCATGTGAACCGTCATCGCAACCTTCATTTGTGACTCGAATGACATCACA
CAGGTCCAGGAGACACTTCTTTCATGGCCATTGCTGTCAGTTCTACTCCCTTCCTCAGAG
ACCTCTAAGAAGAGACCTCGCTTCCAACCTGCCTGCGTGTCCTTTCCAGTCTTTAATAAC
AAACTCCCCAAATTCTTCTCAGTGTCTCTTTTGAACTCTCATCCTTTCACAGGAGTTATG
AAGAAACAGTGGGATCAGGGACTTCAGGGCTTCTTTCAGATCTTAGCCTAGTGGTCCTGA
GGGGCAAGCCCCAGAGTGTGAGGGAAGGAGGGGGAGATATTAATAGATGTGAGGCAGGCA
GCGGCTGACGTCAGGCATATGGGGAAACGATCCAGGACTTCAAGCGACTTCCTCTTTCTG
CAGAGTCCAGCCTTGGGGCCTCTAGATAGCCTTGAGCCAGCAGCTGTACAAGCGCTTGCC
CTCAACCAAGTTGGCGCAGGCGGCTTCTCTCGAGAACATGTGACTCTCCCAGGTCCCGCC
TCTGCCCTCCCAGAGAGGAGGCTAAAAAGCCCTGCCGCTGGTCGGTGGGC
1 EXON 1 130002607 130002828 - 0 222
AGCCTGGCCAGTATGTCCCTAAAATGGAGTGCGTGTTGGGTCGCGCTGGGCCAGCTGCTG
TGCAGCTGCGCGCTGGCTCTGAAGGGCGGGATGCTGTTCCCGAAGGAGAGCCCGTCGCGG
GAGCTCAAGGCGCTGGACGGACTGTGGCACTTCCGCGCCGACCTCTCGAACAATCGGCTG
CAGGGCTTCGAGCAGCAATGGTACCGGCAGCCGCTACGGGAG
INTRON 1 - 2 130000943 130002606 1664
GTGCGTGCTCCCTGGGACCCGGGGT..........GTGACTCTACTTCTTCTTTCCCTAG
2 EXON 2 130000757 130000942 0 0 186
TCGGGCCCAGTCTTGGACATGCCTGTCCCTTCTAGCTTCAATGACATCACCCAAGAAGCA
GCCCTTCGGGACTTTATTGGCTGGGTGTGGTATGAACGGGAAGCAATCCTGCCACGGCGA
TGGACCCAAGATACCGACATGAGAGTGGTGTTGAGGATCAACAGTGCCCATTATTATGCA
GTTGTG
INTRON 2 - 3 130000070 130000756 687
GTCAGTATAGGGAGAGGTTGGCTGG..........ATGGACCTTTGTTTTCCCACCCTAG
3 EXON 3 129999927 130000069 0 - 143
GTATCCCAAGGGTTACTTTGTCCAGGACACAAGCTTTGACTTCTTCAACTATGCGGGACT
GCATCGATCTGTGGTCCTCTACACCACCCCTACCACTTACATCGATGATATCACTGTGAT
CACTAATGTGGAGCAAGACATCG
INTRON 3 - 4 129999529 129999926 398
GTGAGGAATCCCGGCGGGAGGCTCT..........TATGATATCTGTTTCTGTCCCACAG
4 EXON 4 129999341 129999528 - - 188
GGCTGGTGACCTACTGGATTTCTGTGCAGGGCAGTGAACATTTCCAGCTAGAAGTGCAAC
TTTTGGATGAGGGTGGCAAAGTCGTGGCCCATGGGACAGGGAACCAGGGTCAACTTCAGG
TTCCCAGTGCCAACCTCTGGTGGCCTTACCTGATGCATGAGCATCCAGCCTACATGTACT
CCTTGGAG
INTRON 4 - 5 129998554 129999340 787
GTAACGGTGATGTGGGACTGGGGCT..........TTGCCTGCCACATCGGCTCTCCTAG
5 EXON 5 129998410 129998553 - - 144
GTGAAGGTGACAACAACTGAGTCTGTGACTGACTACTACACCCTTCCTATCGGGATTCGA
ACAGTGGCTGTCACAAAGAGCAAGTTCCTCATAAACGGGAAGCCCTTCTATTTCCAAGGG
GTCAACAAGCACGAGGATTCAGAT
INTRON 5 - 6 129998196 129998409 214
GTGAGTTGGAGCTGTGGCATCAATG..........GTCACGCAGCCCTGCTGTCTCCTAG
6 EXON 6 129998017 129998195 - - 179
ATCCGAGGGAAAGGCTTCGACTGGCCGCTGCTGGTAAAGGATTTCAACCTGCTCCGTTGG
CTCGGGGCAAATTCCTTTCGTACCAGCCACTATCCCTACTCAGAGGAGGTACTTCAGCTC
TGTGACCGATACGGGATTGTGGTCATCGATGAGTGTCCCGGTGTGGGCATTGTGCTACC
INTRON 6 - 7 129997927 129998016 90
GTGAGTGCCCGCCCCCTCGCCGTCT..........GACCTTTTCCTCTCTGCCTCCACAG
7 EXON 7 129997780 129997926 - - 147
TCAGAGTTTTGGCAACGAGTCACTTCGGCACCACCTAGAGGTGATGGAGGAGCTGGTTCG
CCGGGACAAAAATCACCCTGCAGTTGTGATGTGGTCTGTGGCCAATGAGCCTTCCTCTGC
TCTGAAACCTGCCGCATATTACTTTAA
INTRON 7 - 8 129995532 129997779 2248
GTGAGTGCTCTTTCTTCCCTGGGCT..........CCTGTCTTCTGCCTTTCATGGACAG
8 EXON 8 129995447 129995531 - - 85
GACGCTGATCACCCACACCAAAGCCCTGGACCTCACCCGTCCCGTGACCTTTGTGAGCAA
CGCCAAATATGATGCAGACCTGGGG
INTRON 8 - 9 129993595 129995446 1852
GTGAGCCTGGAGTGGGGGGGGGGTG..........ATTCACTCGACCGCTCTTGTCTTAG
9 EXON 9 129993418 129993594 - - 177
GCCCCGTACGTGGATGTTATCTGTGTAAACAGCTACTTTTCTTGGTATCATGACTATGGG
CATTTGGAGGTGATTCAGCCACAGCTGAATAGCCAGTTTGAGAACTGGTATAAGACGCAT
CAGAAGCCGATTATCCAGAGCGAGTATGGAGCAGACGCAATCCCAGGGATCCACGAG
INTRON 9 - 10 129990153 129993417 3265
GTAAGCGGTTGATTGTCACGATGGC..........ATACTCCTTTTGCGTTGAATCCCAG
10 EXON 10 129990017 129990152 - - 136
GACCCGCCTCGCATGTTCAGTGAGGAGTACCAGAAGGCTGTTCTGGAGAATTACCATTCA
GTTCTGGATCAGAAACGTAAAGAATACGTGGTCGGAGAGCTCATCTGGAATTTCGCCGAC
TTCATGACGAACCAGT
INTRON 10 - 11 129989688 129990016 329
GTGAGTGTCTGTTGGGCTTAGGGAT..........GTGTGTTTGGGCTGTTTTGTTTTAG
11 EXON 11 129989023 129989687 - - 665
CACCACTGAGAGTAATCGGAAACAAGAAGGGGATCTTCACTCGCCAGAGACAGCCCAAAA
CTTCGGCCTTTATTTTGCGAGAGAGATACTGGAGGATTGCCAACGAAACCGGAGGTCACG
GTTCAGGGCCGAGGACCCAGTGTTTCGGAAGCAGACCGTTCACGTTCTAAAGTTACAACT
ACCTCACTGCAGACTCGCAGGTGTCCCCAGACACTTCCTGACACTAGTGTTTCTACTTGG
GATTTTGTGAACTGATACAAGGGGACTTTAGAAGTGACATCAAAGCTTTTCTTCCGTGGG
GATAATAACTTACAGTGCCTTAGGCTCAGTAATATGTCCTGCTGAGAGGTGTCCAAGATA
ATTTGTTAGTTTTTTGGCCTTGGCTTTGTGAACTCTTGAAAGCCTGCTGTGTGAACATTC
TCACTAAATTAAGAGCTACTGGTGAGAGGCTGGAGTGATGGCTGGCTCACAATTTAAGAG
CACTGACTGTTCTACTGGAGGTTCCAGATTCAATTCCTAGCACCCACCTGGTGGCTAACT
ATGAGCTGGTCCTCCATTTCCCAGGTGATCCAAATGCCCTTTTGGCCCCTTTGGGTACCA
CATGTATGTGGTATGTGGATCTACATGTGGGGAAAAAAGTCATACATGTAAAATAAAAAT
GAATC
3' upstream sequence
TAAAAAAAAAAACTGTTTCTTTCGTTACTATCATTGTCGTCATTGCTGTTTGAGGCAGGG
TTTTTCTGTGTAGCCCTGGCTGCCCTGGAACTTATTCTGTAGACACACTGGCCTCAAAAT
CAAGAGATCTACCTGGCTCCGCCTCCCAAGTGCTGGGATTAAAGGTGTTTGCCACTGCCG
CCACCGCCACCACCACCACACAGCAAATTTGTTTTAAAGTGCTGTGACAGATTGTTCACT
GCCCTGGGACGACCCCCATGCTTGACCATCTAAACAGGCTAGTCTTGACCCAGTGAGAGT
GAAAGAGTCACTCACCAAATGCCACAGAGGAGCTGGGAGTGGTGGCACATGGTTTGAATC
CTTAAGTTTAAGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGATAGCAAGGGCTACACAG
AGAAACTCCTGTCTTTAAAAAACAGGGAGGGGGTGCAGGGGAAGAAGAGACTATTGTTAG
TTCAAATGGGAAGAAATTTTAGGGGTTCTTTATTTCATGTCACCACGGACCTCTTATATT
TTTCAAAATACCCAAGTTTTGTGTCTTAGTTTAATATAATTTTTAAAATATTTTATTATT
TTCTGTGTATGTTTGTGAGTCACATGTGCCTGGGCTGATGCAAATAAAGGCCAGAACATA
TTAGACCCTCTGGAACTGGAGTTATAGGTGTTTGTGAGCCACCATGTGGATGCTGGGAGC
TGAACCCCAATCCTTTGGAAGAACATGGTCACTGGGCTGACCTTCGATGCTTTGGTCCTC
CTGCCTGCCAAACGTGATGGGATCACAGATTCTATCACTCCCAGTTTACACCAAACCTAG
GGCCTTACGCATCCACCCATGCAAACTATCAACAGGACTGACTCTCCAATCCAAGTCCTA
AAGTTTCATGCAAAACACATCATTTATTCAGGGAAGGATGGATAAGTTAGATTTCAAAAG
GACTCATCTTGTTTATAGATGTTACTTCTGTAGAGGACGG..........

Sequence Detail Report

Gene Symbol (Gene ID) Gusb (ENSMUSG00000025534)
Transcript ID ENSMUST00000201801
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 145 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information