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Target CDS Information

Gene Symbol (Gene ID) Trnt1 (ENSMUSG00000013736)
Cross Reference
MGI_trans_name Trnt1-008
OTTP OTTMUSP00000073144
OTTT OTTMUST00000139388
Vega_transcript OTTMUST00000139388, Trnt1-008
Vega_translation 198423, OTTMUSP00000073144
Definition protein_id:ENSMUSP00000144850
translation:
MQSVLYPWHRQVLRCSWSRLCLLKRYLFTMKLQSPEFQSLFTEGLKSLTELFAKENHELR
IAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNKGEKHGTITARLHEENF
EVTTLRIDVTTDGR

Chromosome 6
Length
Position(start - end)
4608
106769856 - 106774465
Orient to Chromosome plus
Link Location : (6:106769856-106774465)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Trnt1 (ENSMUSG00000013736)
Transcript ID ENSMUST00000204782
Reports
substitution
cSNPs0
Insertion6
Deletion6
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000204782)
MQSVLYPWHRQVLRCSWSRLCLLKRYLFTMKLQSPEFQSLFTEGLKSLTELFAKENHELR
IAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNKGEKHGTITARLHEENF
EVTTLRIDVTTDGR
MSMv4 transcript
MQSVLYPWHRQVLRCSWSRLCLLKRYLFTMKLQSPEFQSLFTEGLKSLTELFAKENHELR
IAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNKGEKHGTITARLHEENF
EVTTLRIDVTTDGR
homology100.00 (134 / 134)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Trnt1 (ENSMUSG00000013736)
Transcript ID ENSMUST00000204782
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGTTAAACATCCTGTCTTACGTCAGTGCAGTTCTCTCTCTCTCTCTCTTT
AATAGAATTTATCCAAATATCTACTTAAGTGTGCAGGGCCATGGGATCTGAGATTCAGGC
TTTGGACTCCATTATCGGTGTTTGTGAATCTTGAATGGGATAGTTAGTCTGTCGTTTAAA
AAATTAGATATCCATGACCCCTGAAGTTAAGAGGCAGGGTGACAGAAAACACAGAAATAC
TATGGCGTATGCGTTTTTCAAGGAAAACTAGGAAGGTTAAGGAAGTTTAAGCCACAGGTT
TGTCTTTTTATTCTCTGCCAATCTCTCCACTATGCATAGGACTGAATAAAATCAAAGTTC
TTCCTGTTGCCGGTGGCGAAGTTTACGAAAAGCTGTTAACTGCTAAGATAAAGCAAGTCG
ACCCCATCTCAAGCACCAAGACAAGAACCTTGATTGCTTTCTCTATCTAAAGCCCGAAAA
AACAAAACAAAACAAAAAACAAACAAAAAAAAAAACCCCACTGCCTGTCATGCGCGCAGG
CGCAGGAGGAACTGGCTCCACTTAGTAAAGCCTAGCCCCGCCCAGAGGAAGTGGGTGGGA
CCTTCAGTGGCTTCTCATTCGCTGCGGCTCTTCGTGCGTGCTGACGTCACTGGTCCGCGA
CCCGGAAGTGCGCGTGCGGCCCGGGCAGCAGGCGGGTAAGCGGGTCTTCGGAGTAGGAGC
GCCACGTTTCTAAGAGACCTTGGCGACCTGGCTGTGCAGCGTGCGTCTGAACGCGTCCTT
GGGAGATGGCGGGAGGTGGAGGCTGCTCCCTACTCTAGGCAACGCCCGGTCTCTCTTCAT
TGAGCCGTGGGCGGCGGTCGTATCTCAGGGCCGGTTCCCCGCAGTTTTCCAGAGTTAGGG
GAGAAAGTCGCTATCTCAGATACGCGACCGGCTTGAGCGTCGCTGTCCTCGCGGCGCGCT
ACTTTTCTTGGGGCCCTTGAAGAGCTCCCACCTCTTAGAGGTCGGGCATG
1 EXON 1 106769507 106769554 - - 48
CGGCGAGAATTGCTGAGGCAACCCCGCAGAGTTCCAACTTGGCATGCT
INTRON 1 - 2 106769555 106769829 275
GTAACCTTGAGGCCGACCCTGGGTA..........CGTTACCTGTGTGTTTGCGCCTTAG
2 EXON 2 106769830 106770003 - 1 174
ATGTGTGATTGGCGACTTGTCTCCAGATGCAGAGCGTCCTGTATCCTTGGCACAGGCAGG
TCCTGAGGTGTAGTTGGAGTAGATTGTGCCTTCTGAAGCGATACCTGTTTACAATGAAGT
TGCAGTCCCCAGAATTCCAGTCCCTTTTCACCGAAGGATTGAAGAGCCTGACAG
INTRON 2 - 3 106770004 106773284 3281
GTGAGAAGTTAAGATTGCCCTCTGG..........ACCAAACAAATCCTTCTCTCCTCAG
3 EXON 3 106773285 106773478 1 0 194
AATTATTTGCCAAAGAGAATCATGAATTAAGAATAGCAGGAGGAGCAGTGAGGGATTTAC
TGAATGGGGTGAAGCCTCAAGATGTGGATTTCGCCACCACTGCCACCCCTACTCAGATGA
AGGAGATGTTCCAGTCAGCTGGCATTCGCATGATCAACAACAAAGGAGAGAAACATGGGA
CTATCACTGCCAGG
INTRON 3 - 4 106773479 106774405 927
GTGAGTGCAGCCGACCCGACCGTAC..........AACAAAAACTTGTGTTTAATTTCAG
4 EXON 4 106774406 106774465 0 - 60
CTTCATGAAGAAAATTTTGAAGTTACTACACTCCGAATTGATGTTACCACTGATGGAAGA
3' upstream sequence
CATGCAGAGGTAGAATTCACAACTGACTGGCAGAAAGACGCTGAACGAAGAGATCTCACT
ATAAATTCTATGTTTCTAGGTAATCTTTTGAGAAGATAGGACTGGTCTGTTTGAGAGCCT
CCTTCTGTGTTAAGCCTGTGTTTAAGCCTGTGCTATGGAGATGTTATCCATCATTTACGT
TGAACCTATCGGAGTCTGTTGGCTGATGTTAACATCACTACCTGGAAACTGGAGTGTTTT
TGTCAGTTTCCATTTTAGTACTGTAGTGAAGATTAGGAAGTAACTCAGTGCTTAATAAGA
GAGGGGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATTAATAGGCTCACAGAGTCC
ACCCAGGGTGCCTGCTTTGTTAGAGCCTGTTATCAGATAACCCAATCTGAGGGAAATCTG
ACAAGCTTTTCAAAAACTTGTATTGTGACTTAAGGCTGAAATGTTATTTTTTAAGATTTC
TGGATTTTAATTTTTTTAACCTGTTTTTAATATGGTCTGCTTTTTGTTTTTGAATTTTGA
GTGTGTGTTCAGATCATCTTAGAAACACTTCTCAGTATCTTAAATGCTGAGCCTAATATG
TATTTTGCCATCTTGGTCTGTTTATTTCAAAACAGCTTTTGCATATTAGGAAAATTAGCT
GTTAGTATTTTGGTACTGAGATAATTTTCCCCAGAAATTTAATCAAGCTTGTAACTTTTC
CATTTTTTCTTTTTGCCAGTAAGCTTATTTATATTTTCTAAAAAATGAAAACTTTTTATT
GAATCTTTTTTAAAGTACACATCGTGTACCCCAGTCCTACTCATCTTCTTCTCCCCTTGT
ATCAGCCCTGCGCCCTTGTAACCTCCCTGACAAAGGAGAAAAACCTCTTTGTGGAAGCTA
TAGTGTGTCTCACAGTATAGCATTTTGTCCGTACTTCTTTGCTTGCAAATCTTCACTACA
AAAGTGATTCCTTGGTCTGGTACATGGCCTCCGGCTTGTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Trnt1 (ENSMUSG00000013736)
Transcript ID ENSMUST00000204782
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 134 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information