VariantTable
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name
Col9a1 (ENSMUSG00000026147)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Col9a1
note
: collagen, type IX, alpha 1 [Source:MGI Symbol;Acc:MGI:88465]
name
Col9a1 (ENSMUSG00000026147)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000054588
name
Col9a1 (ENSMUSG00000026147)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000088349
name
Col9a1 (ENSMUSG00000026147)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS35527.1
RefSeq_peptide:
NP_031766
RefSeq_mRNA:
NM_007740.3
Vega_transcript:
Col9a1-001
Vega_transcript:
OTTMUST00000054775
Uniprot/SPTREMBL:
G3X995
UCSC:uc007amo.2
EMBL:
AC129325
EMBL:
AC153653
EMBL:
CH466536
GO:
GO:0001894
GO:
GO:0003417
GO:
GO:0005594
GO:
GO:0005594
GO:
GO:0051216
MGI_trans_name:
Col9a1-001
Vega_translation:
178849
Vega_translation:
OTTMUSP00000026168
goslim_goa:
GO:0005575
goslim_goa:
GO:0008150
goslim_goa:
GO:0040007
goslim_goa:
GO:0042592
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
protein_id:
EDL14410.1
OTTP:
OTTMUSP00000026168
OTTT:
OTTMUST00000054775
Reactome:
R-MMU-1266738
Reactome:
R-MMU-1442490
Reactome:
R-MMU-1474228
Reactome:
R-MMU-1474244
Reactome:
R-MMU-1474290
Reactome:
R-MMU-162582
Reactome:
R-MMU-1650814
Reactome:
R-MMU-186797
Reactome:
R-MMU-216083
Reactome:
R-MMU-375165
Reactome:
R-MMU-419037
Reactome:
R-MMU-422475
UniParc:
UPI000154944D
definition
note
: transcript_id=ENSMUST00000054588
protein_id
: ENSMUSP00000051579
translation
: MKNFWKISVFFCVCSCLGPWVSATLKRRARFPANSISNGGSELCPKIRIGQDDLPGFDLISQFQIEKAASRRTIQRVVGSTALQVAYKLGSNVDFRIPTRHLYPSGLPEEYSFLTTFRMTGSTLEKHWNIWQIQDSAGREQVGVKINGQTKSVAFSYKGLDGSLQTAAFLNLPSLFDSRWHKLMIGVERTSATLFIDCIRIESLPIKPRGQIDADGFAVLGKLVDNPQVSVPFELQWMLIHCDPLRPRRETCHELPIRITTSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPGSRGFPGRGIPGPPGPPGTTGLPGELGRVGPIGDPGKRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGDQGPPGPQGLRGITGIVGDKGEKGARGFDGEPGPQGIPGAAGDQGQRGPPGETGPEGDRGIQGSRGIPGSPGPKGDTGLPGVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQGPPGEVGPRGPRGLPGSRGPVGPEGSPGIPGKLGSVGSPGLPGLPGPPGLPGMKGDRGVFGEPGPKGEQGASGEEGEAGARGDLGDMGQPGPKGSVGNPGEPGLRGPEGIRGLPGVEGPRGPPGPRGMQGDQGATGLPGIQGPPGRAPTDQHIKQVCMRVVQEHFAEMAASLKRPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPPGVAGIPGVPGPPGPPGPPGFCEPASCTLQSGQRAFSKGPDK
name
Col9a1 (ENSMUSG00000026147)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS69871.1
RefSeq_peptide:
NP_001277620
RefSeq_mRNA:
NM_001290691.1
RefSeq_mRNA_predicted:
XM_006495648
Vega_transcript:
Col9a1-002
Vega_transcript:
OTTMUST00000054776
Uniprot/SPTREMBL:
Q9D0D2
UCSC:uc007amp.3
Fantom:
2610025B03
Fantom:
3732413P08
EMBL:
AC129325
EMBL:
AC153653
EMBL:
AK011547
EMBL:
AK028339
EMBL:
BC038017
GO:
GO:0001894
GO:
GO:0003417
GO:
GO:0005594
GO:
GO:0051216
MGI_trans_name:
Col9a1-002
Vega_translation:
178850
Vega_translation:
OTTMUSP00000026169
goslim_goa:
GO:0005575
goslim_goa:
GO:0008150
goslim_goa:
GO:0040007
goslim_goa:
GO:0042592
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
protein_id:
AAH38017.1
protein_id:
BAB27690.1
protein_id:
BAC25891.1
OTTP:
OTTMUSP00000026169
OTTT:
OTTMUST00000054776
Reactome:
R-MMU-1266738
Reactome:
R-MMU-1442490
Reactome:
R-MMU-1474228
Reactome:
R-MMU-1474244
Reactome:
R-MMU-1474290
Reactome:
R-MMU-162582
Reactome:
R-MMU-1650814
Reactome:
R-MMU-186797
Reactome:
R-MMU-216083
Reactome:
R-MMU-375165
Reactome:
R-MMU-419037
Reactome:
R-MMU-422475
UniParc:
UPI00000E8872
definition
note
: transcript_id=ENSMUST00000088349
protein_id
: ENSMUSP00000085687
translation
: MAWAAWGRGVLGLSLMLSGLRLCAAQRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPGSRGFPGRGIPGPPGPPGTTGLPGELGRVGPIGDPGKRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGDQGPPGPQGLRGITGIVGDKGEKGARGFDGEPGPQGIPGAAGDQGQRGPPGETGPEGDRGIQGSRGIPGSPGPKGDTGLPGVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQGPPGEVGPRGPRGLPGSRGPVGPEGSPGIPGKLGSVGSPGLPGLPGPPGLPGMKGDRGVFGEPGPKGEQGASGEEGEAGARGDLGDMGQPGPKGSVGNPGEPGLRGPEGIRGLPGVEGPRGPPGPRGMQGDQGATGLPGIQGPPGRAPTDQHIKQVCMRVVQEHFAEMAASLKRPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPPGVAGIPGVPGPPGPPGPPGFCEPASCTLQSGQRAFSKGPDK
name
type
misc_feature
link
xref
definition
note
: contig AC129325.4 32310..194106(1)
name
Col9a1 (ENSMUSG00000026147)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000054777
Vega_transcript:
OTTMUST00000054777
MGI_trans_name:
Col9a1-003
OTTT:
OTTMUST00000054777
definition
note
: processed_transcript
note
: transcript_id=ENSMUST00000147902
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.