VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Ptpn18 (ENSMUSG00000026126)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Ptpn18
note
: protein tyrosine phosphatase, non-receptor type 18 [Source:MGI Symbol;Acc:MGI:108410]
name
Ptpn18 (ENSMUSG00000026126)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000027302
name
Ptpn18 (ENSMUSG00000026126)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000188972
name
Ptpn18 (ENSMUSG00000026126)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS14867.1
Uniprot/SWISSPROT:
Q61152
RefSeq_peptide:
NP_035336
RefSeq_mRNA:
NM_011206.2
RefSeq_mRNA_predicted:
XM_006495800.2
RefSeq_peptide_predicted:
XP_006495863.1
Vega_transcript:
OTTMUST00000126097
Vega_transcript:
Ptpn18-002
UCSC:uc007aos.1
Fantom:
G630030E23
EMBL:
AK144353
EMBL:
BC008512
EMBL:
U35124
EMBL:
U49853
EMBL:
U52523
GO:
GO:0004726
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0035335
MGI_trans_name:
Ptpn18-002
Vega_translation:
178916
Vega_translation:
OTTMUSP00000068237
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0006464
goslim_goa:
GO:0008150
goslim_goa:
GO:0016791
goslim_goa:
GO:0043226
protein_id:
AAB18623.1
protein_id:
AAB82736.1
protein_id:
AAC52991.1
protein_id:
AAH08512.1
protein_id:
BAE25845.1
OTTP:
OTTMUSP00000068237
OTTT:
OTTMUST00000126097
UniParc:
UPI0000027E91
definition
note
: transcript_id=ENSMUST00000027302
protein_id
: ENSMUSP00000027302
translation
: MSRHTDLVRSFLEQLEARDYREGAILAREFSDIKARSVAWKSEGVCSTKAGSRLGNTNKNRYKDVVAYDETRVILSLLQEEGHGDYINANFIRGIDGSQAYIATQGPLPHTLLDFWRLVWEFGVKVILMACQETENGRRKCERYWAREQEPLKAGPFCITLTKETTLNADITLRTLQVTFQKEFRSVHQLQYMSWPDHGVPSSSDHILTMVEEARCLQGLGPGPLCVHCSAGCGRTGVLCAVDYVRQLLLTQTIPPNFSLFQVVLEMRKQRPAAVQTEEQYRFLYHTVAQLFSRTLQDTSPHYQNLKENCAPICKEAFSLRTSSALPATSRPPGGVLRSISVPAPPTLPMADTYAVVQKRGASAGTGPGPRAPTSTDTPIYSQVAPRAQRPVAHTEDAQGTTALRRVPADQNSSGPDAYEEVTDGAQTGGLGFNLRIGRPKGPRDPPAEWTRV
name
Ptpn18 (ENSMUSG00000026126)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000126101
Vega_transcript:
Ptpn18-001
Uniprot/SPTREMBL:
Q3V441
Fantom:
3110012D23
EMBL:
AC106841
EMBL:
AK014043
GO:
GO:0004726
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0035335
MGI_trans_name:
Ptpn18-001
Vega_translation:
178918
Vega_translation:
OTTMUSP00000068239
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0006464
goslim_goa:
GO:0008150
goslim_goa:
GO:0016791
goslim_goa:
GO:0043226
protein_id:
BAE43238.1
OTTP:
OTTMUSP00000068239
OTTT:
OTTMUST00000126101
UniParc:
UPI000047599A
definition
note
: transcript_id=ENSMUST00000188972
protein_id
: ENSMUSP00000140436
translation
: MADTYAVVQKRGASAGTGPGPRAPTSTDTPIYSQVAPRAQRPVAHTEDAQGTTALRRVPADQNSSGPDAYEEVTDGAQTGGLDGM
name
type
STS
link
xref
UniSTS_NUM:163245
UniSTS:U52523
WI_MRC-RH:5004
definition
note
: map_weight=1
standard_name
: U52523
name
type
misc_feature
link
xref
definition
note
: contig AC106841.11 1..149378(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.