VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Fam178b (ENSMUSG00000046337)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Fam178b
note
: family with sequence similarity 178, member B [Source:MGI Symbol;Acc:MGI:3026913]
name
Fam178b (ENSMUSG00000046337)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000170295
name
Fam178b (ENSMUSG00000046337)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000114981
name
Fam178b (ENSMUSG00000046337)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS48241.1
RefSeq_peptide:
NP_001119518
RefSeq_mRNA:
NM_001126046.1
RefSeq_peptide_predicted:
XP_011236855.1
Vega_transcript:
Fam178b-001
Vega_transcript:
OTTMUST00000051781
Uniprot/SPTREMBL:
E9PXB2
UCSC:uc011wjn.1
EMBL:
AC084389
EMBL:
AC084391
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
MGI_trans_name:
Fam178b-001
Vega_translation:
178988
Vega_translation:
OTTMUSP00000047339
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0008150
OTTP:
OTTMUSP00000047339
OTTT:
OTTMUST00000051781
UniParc:
UPI0001738F65
definition
note
: transcript_id=ENSMUST00000170295
protein_id
: ENSMUSP00000132846
translation
: MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNMASPSQQAGTPEISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRHPLPCFLDSSRLKPHSPLEELFLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLLTWPPETSSRAFGLLWDLSIDGLFRQPDEDMHFWCPSLQEVKEVFSSLGAYNPALYPQGPFQHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCRAGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNLLALVQFFLDVTPRGRQLRSQLSLVIIARMLGQQESLPFSAEKTQLALLSQLLSLMRPSSLRQCLGIETLPSSLGQHSKASAELDYKVCYLCHSLLTLAGVVVSSQDITPNQWGELQLLCMQLDRHISTHIRESPQAMHRTKLKDLATQTYIRWQDLLAHCQPQGQYFSPWKDI
name
Fam178b (ENSMUSG00000046337)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS14885.2
RefSeq_peptide:
NP_958753
RefSeq_mRNA:
NM_201365.2
Vega_transcript:
Fam178b-009
Vega_transcript:
OTTMUST00000127237
Uniprot/SPTREMBL:
E9PUL8
UCSC:uc007aqv.3
EMBL:
AC084389
EMBL:
AC084391
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
MGI_trans_name:
Fam178b-009
Vega_translation:
178991
Vega_translation:
OTTMUSP00000068694
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0008150
OTTP:
OTTMUSP00000068694
OTTT:
OTTMUST00000127237
UniParc:
UPI00001E2FFB
definition
note
: transcript_id=ENSMUST00000114981
protein_id
: ENSMUSP00000124023
translation
: MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNMASPSQQAGTPEISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRHPLPCFLDSSRLKPHSPLEELFLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLLTWPPETSSRAFGLLWDLSIDGLFRQPDEDMHFWCPSLQEVKEVFSSLGAYNPALYPQGPFQHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCRAGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNLLALVQFFLDVTPRGRWVLLNHIPRDLSRI
name
type
misc_feature
link
xref
definition
note
: contig AC084389.1 1..206297(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.