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Target CDS Information

Gene Symbol (Gene ID) Fam178b (ENSMUSG00000046337)
Cross Reference
CCDS CCDS48241.1
EMBL AC084389, AC084391
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Fam178b-001
OTTP OTTMUSP00000047339
OTTT OTTMUST00000051781
RefSeq_mRNA NM_001126046.1
RefSeq_peptide NP_001119518
RefSeq_peptide_predicted XP_011236855.1
UCSC uc011wjn.1
UniParc UPI0001738F65
Uniprot/SPTREMBL E9PXB2
Vega_transcript Fam178b-001, OTTMUST00000051781
Vega_translation 178988, OTTMUSP00000047339
Definition protein_id:ENSMUSP00000132846
translation:
MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNM
ASPSQQAGTPEISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRH
PLPCFLDSSRLKPHSPLEELFLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLL
TWPPETSSRAFGLLWDLSIDGLFRQPDEDMHFWCPSLQEVKEVFSSLGAYNPALYPQGPF
QHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCR
AGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNLLALVQFFLDV
TPRGRQLRSQLSLVIIARMLGQQESLPFSAEKTQLALLSQLLSLMRPSSLRQCLGIETLP
SSLGQHSKASAELDYKVCYLCHSLLTLAGVVVSSQDITPNQWGELQLLCMQLDRHISTHI
RESPQAMHRTKLKDLATQTYIRWQDLLAHCQPQGQYFSPWKDI

Chromosome 1
Length
Position(start - end)
97958
36562988 - 36660947
Orient to Chromosome minus
Link Location : (1:36562988-36660947)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fam178b (ENSMUSG00000046337)
Transcript ID ENSMUST00000170295
Reports
substitution
cSNPs5
Insertion81
Deletion92
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num2
synonymous substitutions 36564480 (p.Gly463Gly), 36578537 (p.Ser430Ser), 36632439 (p.Asp200Asp),
non-synonymous substitutions 36585968 (p.Ala377Val), 36600553 (p.Val284Ala),
B6 transcript
(ENSMUST00000170295)
MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNM
ASPSQQAGTPEISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRH
PLPCFLDSSRLKPHSPLEELFLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLL
TWPPETSSRAFGLLWDLSIDGLFRQPDEDMHFWCPSLQEVKEVFSSLGAYNPALYPQGPF
QHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCR
AGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNLLALVQFFLDV
TPRGRQLRSQLSLVIIARMLGQQESLPFSAEKTQLALLSQLLSLMRPSSLRQCLGIETLP
SSLGQHSKASAELDYKVCYLCHSLLTLAGVVVSSQDITPNQWGELQLLCMQLDRHISTHI
RESPQAMHRTKLKDLATQTYIRWQDLLAHCQPQGQYFSPWKDI*
MSMv4 transcript
MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNM
ASPSQQAGTPEISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRH
PLPCFLDSSRLKPHSPLEELFLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLL
TWPPETSSRAFGLLWDLSIDGLFRQPDEDMHFWCPSLQEVKEVFSSLGAYNPALYPQGPF
QHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPASYTDASILDLMELLCR
AGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNLLALVQFFLDV
TPRGRQLRSQLSLVIIVRMLGQQESLPFSAEKTQLALLSQLLSLMRPSSLRQCLGIETLP
SSLGQHSKASAELDYKVCYLCHSLLTLAGVVVSSQDITPNQWGELQLLCMQLDRHISTHI
RESPQAMHRTKLKDLATQTYIRWQDLLAHCQPQGQYFSPWKDI*
homology99.62 (524 / 524)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fam178b (ENSMUSG00000046337)
Transcript ID ENSMUST00000170295
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTGGCTCCGTGCCTTTCTATTAAACTTTCAAATGGTGCTCTTTAATAGAA
ACCCGCCCAAACATTTAAGATGGCCTGCGCTTTCCAAAGAACAGTAAGGAGTTCAGAGAG
GACCGGGCTGATTCCTTGAGTAAACCCAGCTCTTCATAAGGCTGAGGCAGGAGAATCAGA
TATTTTAATTGGAGTTTGAGGTCAGCCTGTGGTACACAGTGACTACCTGTCTCAAAAACA
ATTAATGAAATTAAAAGTAAAAATGCTTGTTGCAACTGGAAGTCAGATGAATTGACTAGA
CCATTAAAAGAAAAGAGGAAGACTCCTCCAGCATACTAGGACAGCTGTGATCCTGCCCAT
ACCATCCTGGTCACCAAAGAAGGGCTCCCTCCAGAGACAGAATTTGCTAAAATTCCAGAG
TCAGGCTGGCAAAATTCAGCTCTACTGCCCTCTTGCCTGGAGAACAGGGCCAACAGATCA
TTAATTAGCTACAAGTAATGCCTAATTAAGTACTGGTTCCTCAAGTGTGTAGGGCACAGA
TTTTCATGGAAGACAGGTCTGGCTGAGGCTAAATCAAAATGACGCATATAAGTGGCCTCT
CTCAATGTTAGTTATTGGGCCAGGGCTCAACCAGTGTTGGCTGTCAATCCGCAGGGTTGA
CATCCCTTAAGCTGCCTCTCCTTCACGCTTGCATACTCACACAGAAGAACGCCCAGAACA
GGTTCTCAAAGCAGCTCGTGGCCAACATTCAACAGCGAAAGGCGTAGAGCTATGCACCAC
TAACTGCGGCGCCTCGACTTTGGAAAAGTCCCGTCGTTAGACCGCTGAACGTTAAACTGC
GCATCCCGAGTTCAAATCTCCTTGCCTTCCCTTTGCTCTTGGGCCACAAGCAAGCCCTCC
GCATCCGCATCTGGAAAACCCAAGGCTGGCTGAAATTCAGAAGCTGAGTGGCGCGGGGTG
ATCCGGGCGCGCGCACGTGGAGGGGTTGCCACGCGACCCGAGGGCGCGTG
1 EXON 1 36682868 36683183 - - 316
GGGGGTTGCCACGTGACGGGGTGGGGAGGAGCACGTGAGAGGTCACAGCCTGCCCTAACG
GTGAGTGCGCTAGGCCTGGCAGGCTCGGTTGGGCCCCCGAGAAGGTCCCTCCTCTCGACT
GTCCCTGCTGACCTGGCCCCCCACCACCGTGGTCTCCTGCTCCAGCTTCTTGTGCCCCAT
CTTCTGAGGCTGCCTCGGAGGTTCCTTCCCGTGCCACGGCTTCCTGTGGCTGCTTTTCAG
GTTCTTGAGTCCAGGGCTCCCAGGAATAGGCCTCCATCACAGCCCGCGGGGTAGGACCAA
AAGCTGCCTTTTACCG
INTRON 1 - 2 36661050 36682867 21818
GTAAGTTCCCCCGGGACCACAATTT..........ACTGATTTTGCCTATCTCTTTGCAG
2 EXON 2 36660735 36661049 - 0 315
AGCCTCAAGTGCAGCCTGCTGGACCACCTCCTTCTCCACTCAGGGCCACAGCTCTGCAGC
CCTACAGTGGCTCTAACTCCCAAATCACTGAAGAGGCCCAAGATGCAGATGCCCAGGGAC
TCGTTCCCCACTGACTGGAGCCCACCTCCTGTAGAGTTCCTAAACAAGCCCAAGAAAGCA
CCTCCAGCCAAAAAGGGACCCCTTGAGGACTTGGAGAAGGACCCTCCAGATCCCAACCAG
AAGGTGGAGCTGGCCTCCCTGGAGGAGCTCTTCTGGAACATGGCAAGTCCAAGCCAACAG
GCTGGGACCCCAGAG
INTRON 2 - 3 36659426 36660734 1309
GTAAGTAAGGCAGTGGCCATCTTGG..........CCATGCCTGTGTCCTGTCTTTCCAG
3 EXON 3 36659364 36659425 0 2 62
ATTTCCTCTGGGAGCTCACAATGCTACATCAATAACTTAGATTACTTACTGCAAGAAAAG
AG
INTRON 3 - 4 36644363 36659363 15001
GTGAGTATGGGGTGAGGTCCATTGT..........CCTGCCCTACCCCTTGCCTTGCCAG
4 EXON 4 36644210 36644362 2 2 153
GATGCTGGTGGAGAAGTTCTCCGTGTCCCTGCAGGTCATCTCGCCAGTGCATCCGGGTGA
AACTGTATTCTTGCCTAGGCGTCACCCTTTGCCTTGCTTCCTGGACTCCTCTCGTCTAAA
GCCGCACAGCCCATTGGAAGAGCTGTTCCTCAG
INTRON 4 - 5 36635273 36644209 8937
GTAAGCACACTGTGCTGGCTATTTT..........TAACCTAATTGCTCTGACCCCACAG
5 EXON 5 36635167 36635272 2 0 106
GTCCTCGCTGCCCGAGCAGCTCTCCTTCCTACACAATGGCCTCCTGAGCAACCTCTACCT
GCATGCTGCTGACTGCCCTCAGCCTCTGCTGCAGTGGCTGTTCCAG
INTRON 5 - 6 36632505 36635166 2662
GTGAGAAGCACAGGCCTGCCGCTAG..........AGGTGTCTTTTCTTTTTGTCCCTAG
6 EXON 6 36632420 36632504 0 1 85
TTGTTAACATGGCCTCCAGAAACATCTTCAAGAGCTTTTGGCCTCCTCTGGGATCTCAGT
ATAGACGGACTGTTCCGTCAGCCTG
INTRON 6 - 7 36608532 36632419 23888
GTAAGTGCCCAGATGCACTCTGGAG..........AACTCTGCTCTCCTTTGCCTGGCAG
7 EXON 7 36608417 36608531 1 2 115
ATGAAGACATGCATTTCTGGTGTCCCTCACTGCAGGAGGTCAAAGAGGTGTTCAGCAGCC
TGGGAGCCTACAACCCCGCCCTGTACCCACAGGGGCCCTTCCAGCACAGCGCAAG
INTRON 7 - 8 36600952 36608416 7465
GTGTGTACCTCCCCTCCTCGTTGCT..........TGATATTGTTTCTGTCTTATGTCAG
8 EXON 8 36600867 36600951 2 0 85
GGTGCTTGAGAGTGAGGCCAGCCTGGATTCACAGGATCCTCCCCAGGAAGTGGCCTTGGA
CATTAAGTTGAACTACATCTACAAG
INTRON 8 - 9 36600585 36600866 282
GTGAGCCAAGCTTTCCTTTCCCAAC..........CCTGCTTCTTTGTCTTGCCCTCCAG
9 EXON 9 36600408 36600584 0 0 177
TTCCTGACCCTGTGTCTCCTAGTCCGGCCAGCGTCCTACACGGATGCCAGCATCTTGGAT
CTGATGGAGCTGCTGTGCCGCGCAGGCCTGGATGTAGGGTTGTGCCTGCTGCCCAAGACT
GACCTCCAGCAACTCCTGCTCCTGCTGCTGGAGAGAATCCAAGAGTGGCCTGGAAAG
INTRON 9 - 10 36600221 36600407 187
GTACACAGCCTGGGCTCTGCCCCTG..........CTTACTGGGTGCCTCTGCCCTACAG
10 EXON 10 36600123 36600220 0 2 98
CTCCAGCCCCTTTGCTGTGCCCTGAGCTGGGTGTCCGACCACCACCACAACCTGCTGGCC
CTCGTGCAGTTCTTCCTGGATGTGACGCCTCGGGGCAG
INTRON 10 - 11 36586004 36600122 14119
GTGGGTGCTTCTCAACCACATCCCA..........CAGATTCCCTCTTCTTCTCTCCCAG
11 EXON 11 36585916 36586003 2 0 88
GCAGCTGAGAAGTCAGCTGAGTCTTGTGATTATTGTCCGGATGCTGGGCCAGCAGGAGTC
ACTTCCTTTCTCGGCAGAGAAAACCCAG
INTRON 11 - 12 36578645 36585915 7271
GTGAGTCTGCCTCAACAGGACCGGG..........TCACAGTCTCCTTTCTTCTCCCCAG
12 EXON 12 36578519 36578644 0 0 126
CTAGCCCTGCTCAGCCAGCTCCTCAGCCTCATGAGGCCTTCGTCCCTCAGGCAGTGTCTG
GGCATTGAAACCTTGCCATCCAGTCTAGGGCAACACTCAAAGGCCAGCGCCGAGCTAGAC
TACAAG
INTRON 12 - 13 36564909 36578518 13610
GTGAGTACCTCAGCTCCTGCCTGCC..........TCTCTCTCTCTCTCTCCCTTTCCAG
13 EXON 13 36564831 36564908 0 0 78
GTCTGCTATCTGTGCCACAGCCTCCTGACACTAGCTGGGGTCGTGGTCAGTAGCCAGGAC
ATTACTCCCAATCAATGG
INTRON 13 - 14 36564483 36564830 348
GTGAGTCTCCCAAGATGCTGAAGCA..........TCCTCCTCCTCCTCCTCCTCCTCAG
14 EXON 14 36564330 36564482 0 0 153
GGTGAGCTACAGCTGTTGTGCATGCAGTTGGACCGTCATATCAGCACCCATATCCGGGAG
AGCCCTCAGGCCATGCACCGGACCAAACTCAAGGACCTAGCTACCCAGACTTACATCCGC
TGGCAGGACTTGCTGGCCCACTGTCAGCCCCAG
INTRON 14 - 15 36563021 36564329 1309
GTGGTGTCCCATAATCCCCTAGACC..........ACAGGCTACTCTCTCTTCTTCACAG
15 EXON 15 36562692 36563020 0 - 329
GGTCAGTACTTCAGCCCTTGGAAAGACATTTAAAGGGATAAGAGCAAAGTGGCCCAAGGC
TGTGGACTGGAGCAGGAAGAGAACTGTAGGAGGTGAAGAATGGAGCCGGAGGAGGCCCAG
CCTGGTGAAGGTAGACTACTGCCACCACCCAGCGAGGGGTTCTTGTGTCCCTGACCATCC
CCACCCTTGAGCTCCCCCACCTGCACAGCTGTCTCTTCTGTTCTGGGCTCTCCCTGTTGG
CCACTGACTTTCCCACACCTTGCCCTCTCTGCCCATCTTGAATATGAGGTTCATTTGTGC
ATATTAAAGTATTATTTCCAGCATCCATG
3' upstream sequence
GTTCTGGAGTTCCTTCCATCCCTACCCCGAGGGCTCATGCCCAGCACCTAGCCTGACAGA
AGAATCACCTCTGCTTGAGTCAGCCACTACTGGTGTCACCTCAGGTTGTCATGTGACTGG
GGCCTCGGACCCACCCCCTGCACTTGAGGACTCTGTTTCTAGGAGTCCCGCCAGTGACCA
GAATTGCTGGAGCCTGGGCACTCTTGGATGGCCCTGTCTGGGTCCACCTCATCCTGCTAG
GGACGCTATACTGAGAGGATGGTGGATTGGGGCTGTAATTTTGCTTAATTCAATTTAGTG
CTGAGCTCTGAAGTCAACTTCCTAGAGATAGGAGTGGGGGAGGGTGCAAAAGACAGTTTT
GGATCCTGCTGTTTCTTTCCCTGCCTTGTCTCCAGAGCAGTTCCTGGGTCCTAATCTCTA
CTTGCACATCTCGACGTCCTTGATCTGAATGGCTAGAGGAATAAGTGGGCCCCTTTGTAC
CTCCAGAAGCAGCCCCACAGTCCTATCTACTCTCTTACTGTCTGCTCCTCCGACCGAAGC
CATGCTCATGCCTGCCCCCACCCCAGATACTTTCAGGATGAGCTTTGTAAGGGGGAGCCG
GAGGTGACACTCCTGCCACCTTGACTCGTGTCCACTTCTCAGGGGGTGAAGGTCCCAGAG
TGTTCCATGGCTGTTGCACACAATCTTCTCTGTTTCCATGTCCCAGGGTTGGGGCCTGAC
TAGGAGCTAGACAAAGAGTCACCCCCATCTACCTTCCAAGGCCTAATTGAGCACAGCTAC
CCTGCTCTCTGGGTCCCCAGAAGGTCAGGAGCTAGAGGCATCTATTATTTACAGGACAAG
GCAGACTCTGCACAGTACTGGGTACCACAGAGGACATCTTTTCTGTCTCAAAGCCTTTGC
CAAATGAGAAGTGGAAGAAACCCTCCCAGAGCCAGGTGACTTGACTGATAGTTCTGGTTT
CTCTTCCTGGACACATCACAAACTCCTTTGGCATACCCTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Fam178b (ENSMUSG00000046337)
Transcript ID ENSMUST00000170295
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 524 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information