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Target CDS Information

Gene Symbol (Gene ID) Fam178b (ENSMUSG00000046337)
Cross Reference
CCDS CCDS48241.1
EMBL AC084389, AC084391
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Fam178b-001
OTTP OTTMUSP00000047339
OTTT OTTMUST00000051781
RefSeq_mRNA NM_001126046.1
RefSeq_peptide NP_001119518
RefSeq_peptide_predicted XP_011236855.1
UCSC uc011wjn.1
UniParc UPI0001738F65
Uniprot/SPTREMBL E9PXB2
Vega_transcript Fam178b-001, OTTMUST00000051781
Vega_translation 178988, OTTMUSP00000047339
Definition protein_id:ENSMUSP00000132846
translation:
MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNM
ASPSQQAGTPEISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRH
PLPCFLDSSRLKPHSPLEELFLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLL
TWPPETSSRAFGLLWDLSIDGLFRQPDEDMHFWCPSLQEVKEVFSSLGAYNPALYPQGPF
QHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCR
AGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNLLALVQFFLDV
TPRGRQLRSQLSLVIIARMLGQQESLPFSAEKTQLALLSQLLSLMRPSSLRQCLGIETLP
SSLGQHSKASAELDYKVCYLCHSLLTLAGVVVSSQDITPNQWGELQLLCMQLDRHISTHI
RESPQAMHRTKLKDLATQTYIRWQDLLAHCQPQGQYFSPWKDI

Chromosome 1
Length
Position(start - end)
97,958
36,562,988 - 36,660,947
Orient to Chromosome minus
Link Location : (1:36562988-36660947)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fam178b (ENSMUSG00000046337)
Transcript ID ENSMUST00000170295
Reports
substitution
cSNPs5
Insertion81
Deletion92
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num2
synonymous substitutions 36564480 (p.Gly463Gly), 36578537 (p.Ser430Ser), 36632439 (p.Asp200Asp),
non-synonymous substitutions 36585968 (p.Ala377Val), 36600553 (p.Val284Ala),
B6 transcript
(ENSMUST00000170295)
MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNM
ASPSQQAGTPEISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRH
PLPCFLDSSRLKPHSPLEELFLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLL
TWPPETSSRAFGLLWDLSIDGLFRQPDEDMHFWCPSLQEVKEVFSSLGAYNPALYPQGPF
QHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCR
AGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNLLALVQFFLDV
TPRGRQLRSQLSLVIIARMLGQQESLPFSAEKTQLALLSQLLSLMRPSSLRQCLGIETLP
SSLGQHSKASAELDYKVCYLCHSLLTLAGVVVSSQDITPNQWGELQLLCMQLDRHISTHI
RESPQAMHRTKLKDLATQTYIRWQDLLAHCQPQGQYFSPWKDI*
MSMv4 transcript
MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNM
ASPSQQAGTPEISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRH
PLPCFLDSSRLKPHSPLEELFLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLL
TWPPETSSRAFGLLWDLSIDGLFRQPDEDMHFWCPSLQEVKEVFSSLGAYNPALYPQGPF
QHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPASYTDASILDLMELLCR
AGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNLLALVQFFLDV
TPRGRQLRSQLSLVIIVRMLGQQESLPFSAEKTQLALLSQLLSLMRPSSLRQCLGIETLP
SSLGQHSKASAELDYKVCYLCHSLLTLAGVVVSSQDITPNQWGELQLLCMQLDRHISTHI
RESPQAMHRTKLKDLATQTYIRWQDLLAHCQPQGQYFSPWKDI*
homology99.62 (524 / 524)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fam178b (ENSMUSG00000046337)
Transcript ID ENSMUST00000170295
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTGGCTCCGTGCCTTTCTATTAAACTTTCAAATGGTGCTCTTTAATAGAA
ACCCGCCCAAACATTTAAGATGGCCTGCGCTTTCCAAAGAACAGTAAGGAGTTCAGAGAG
GACCGGGCTGATTCCTTGAGTAAACCCAGCTCTTCATAAGGCTGAGGCAGGAGAATCAGA
TATTTTAATTGGAGTTTGAGGTCAGCCTGTGGTACACAGTGACTACCTGTCTCAAAAACA
ATTAATGAAATTAAAAGTAAAAATGCTTGTTGCAACTGGAAGTCAGATGAATTGACTAGA
CCATTAAAAGAAAAGAGGAAGACTCCTCCAGCATACTAGGACAGCTGTGATCCTGCCCAT
ACCATCCTGGTCACCAAAGAAGGGCTCCCTCCAGAGACAGAATTTGCTAAAATTCCAGAG
TCAGGCTGGCAAAATTCAGCTCTACTGCCCTCTTGCCTGGAGAACAGGGCCAACAGATCA
TTAATTAGCTACAAGTAATGCCTAATTAAGTACTGGTTCCTCAAGTGTGTAGGGCACAGA
TTTTCATGGAAGACAGGTCTGGCTGAGGCTAAATCAAAATGACGCATATAAGTGGCCTCT
CTCAATGTTAGTTATTGGGCCAGGGCTCAACCAGTGTTGGCTGTCAATCCGCAGGGTTGA
CATCCCTTAAGCTGCCTCTCCTTCACGCTTGCATACTCACACAGAAGAACGCCCAGAACA
GGTTCTCAAAGCAGCTCGTGGCCAACATTCAACAGCGAAAGGCGTAGAGCTATGCACCAC
TAACTGCGGCGCCTCGACTTTGGAAAAGTCCCGTCGTTAGACCGCTGAACGTTAAACTGC
GCATCCCGAGTTCAAATCTCCTTGCCTTCCCTTTGCTCTTGGGCCACAAGCAAGCCCTCC
GCATCCGCATCTGGAAAACCCAAGGCTGGCTGAAATTCAGAAGCTGAGTGGCGCGGGGTG
ATCCGGGCGCGCGCACGTGGAGGGGTTGCCACGCGACCCGAGGGCGCGTG
1 EXON 1 36,682,868 36,683,183 - - 316
GGGGGTTGCCACGTGACGGGGTGGGGAGGAGCACGTGAGAGGTCACAGCCTGCCCTAACG
GTGAGTGCGCTAGGCCTGGCAGGCTCGGTTGGGCCCCCGAGAAGGTCCCTCCTCTCGACT
GTCCCTGCTGACCTGGCCCCCCACCACCGTGGTCTCCTGCTCCAGCTTCTTGTGCCCCAT
CTTCTGAGGCTGCCTCGGAGGTTCCTTCCCGTGCCACGGCTTCCTGTGGCTGCTTTTCAG
GTTCTTGAGTCCAGGGCTCCCAGGAATAGGCCTCCATCACAGCCCGCGGGGTAGGACCAA
AAGCTGCCTTTTACCG
INTRON 1 - 2 36,661,050 36,682,867 21,818
GTAAGTTCCCCCGGGACCACAATTT..........ACTGATTTTGCCTATCTCTTTGCAG
2 EXON 2 36,660,735 36,661,049 - 0 315
AGCCTCAAGTGCAGCCTGCTGGACCACCTCCTTCTCCACTCAGGGCCACAGCTCTGCAGC
CCTACAGTGGCTCTAACTCCCAAATCACTGAAGAGGCCCAAGATGCAGATGCCCAGGGAC
TCGTTCCCCACTGACTGGAGCCCACCTCCTGTAGAGTTCCTAAACAAGCCCAAGAAAGCA
CCTCCAGCCAAAAAGGGACCCCTTGAGGACTTGGAGAAGGACCCTCCAGATCCCAACCAG
AAGGTGGAGCTGGCCTCCCTGGAGGAGCTCTTCTGGAACATGGCAAGTCCAAGCCAACAG
GCTGGGACCCCAGAG
INTRON 2 - 3 36,659,426 36,660,734 1,309
GTAAGTAAGGCAGTGGCCATCTTGG..........CCATGCCTGTGTCCTGTCTTTCCAG
3 EXON 3 36,659,364 36,659,425 0 2 62
ATTTCCTCTGGGAGCTCACAATGCTACATCAATAACTTAGATTACTTACTGCAAGAAAAG
AG
INTRON 3 - 4 36,644,363 36,659,363 15,001
GTGAGTATGGGGTGAGGTCCATTGT..........CCTGCCCTACCCCTTGCCTTGCCAG
4 EXON 4 36,644,210 36,644,362 2 2 153
GATGCTGGTGGAGAAGTTCTCCGTGTCCCTGCAGGTCATCTCGCCAGTGCATCCGGGTGA
AACTGTATTCTTGCCTAGGCGTCACCCTTTGCCTTGCTTCCTGGACTCCTCTCGTCTAAA
GCCGCACAGCCCATTGGAAGAGCTGTTCCTCAG
INTRON 4 - 5 36,635,273 36,644,209 8,937
GTAAGCACACTGTGCTGGCTATTTT..........TAACCTAATTGCTCTGACCCCACAG
5 EXON 5 36,635,167 36,635,272 2 0 106
GTCCTCGCTGCCCGAGCAGCTCTCCTTCCTACACAATGGCCTCCTGAGCAACCTCTACCT
GCATGCTGCTGACTGCCCTCAGCCTCTGCTGCAGTGGCTGTTCCAG
INTRON 5 - 6 36,632,505 36,635,166 2,662
GTGAGAAGCACAGGCCTGCCGCTAG..........AGGTGTCTTTTCTTTTTGTCCCTAG
6 EXON 6 36,632,420 36,632,504 0 1 85
TTGTTAACATGGCCTCCAGAAACATCTTCAAGAGCTTTTGGCCTCCTCTGGGATCTCAGT
ATAGACGGACTGTTCCGTCAGCCTG
INTRON 6 - 7 36,608,532 36,632,419 23,888
GTAAGTGCCCAGATGCACTCTGGAG..........AACTCTGCTCTCCTTTGCCTGGCAG
7 EXON 7 36,608,417 36,608,531 1 2 115
ATGAAGACATGCATTTCTGGTGTCCCTCACTGCAGGAGGTCAAAGAGGTGTTCAGCAGCC
TGGGAGCCTACAACCCCGCCCTGTACCCACAGGGGCCCTTCCAGCACAGCGCAAG
INTRON 7 - 8 36,600,952 36,608,416 7,465
GTGTGTACCTCCCCTCCTCGTTGCT..........TGATATTGTTTCTGTCTTATGTCAG
8 EXON 8 36,600,867 36,600,951 2 0 85
GGTGCTTGAGAGTGAGGCCAGCCTGGATTCACAGGATCCTCCCCAGGAAGTGGCCTTGGA
CATTAAGTTGAACTACATCTACAAG
INTRON 8 - 9 36,600,585 36,600,866 282
GTGAGCCAAGCTTTCCTTTCCCAAC..........CCTGCTTCTTTGTCTTGCCCTCCAG
9 EXON 9 36,600,408 36,600,584 0 0 177
TTCCTGACCCTGTGTCTCCTAGTCCGGCCAGCGTCCTACACGGATGCCAGCATCTTGGAT
CTGATGGAGCTGCTGTGCCGCGCAGGCCTGGATGTAGGGTTGTGCCTGCTGCCCAAGACT
GACCTCCAGCAACTCCTGCTCCTGCTGCTGGAGAGAATCCAAGAGTGGCCTGGAAAG
INTRON 9 - 10 36,600,221 36,600,407 187
GTACACAGCCTGGGCTCTGCCCCTG..........CTTACTGGGTGCCTCTGCCCTACAG
10 EXON 10 36,600,123 36,600,220 0 2 98
CTCCAGCCCCTTTGCTGTGCCCTGAGCTGGGTGTCCGACCACCACCACAACCTGCTGGCC
CTCGTGCAGTTCTTCCTGGATGTGACGCCTCGGGGCAG
INTRON 10 - 11 36,586,004 36,600,122 14,119
GTGGGTGCTTCTCAACCACATCCCA..........CAGATTCCCTCTTCTTCTCTCCCAG
11 EXON 11 36,585,916 36,586,003 2 0 88
GCAGCTGAGAAGTCAGCTGAGTCTTGTGATTATTGTCCGGATGCTGGGCCAGCAGGAGTC
ACTTCCTTTCTCGGCAGAGAAAACCCAG
INTRON 11 - 12 36,578,645 36,585,915 7,271
GTGAGTCTGCCTCAACAGGACCGGG..........TCACAGTCTCCTTTCTTCTCCCCAG
12 EXON 12 36,578,519 36,578,644 0 0 126
CTAGCCCTGCTCAGCCAGCTCCTCAGCCTCATGAGGCCTTCGTCCCTCAGGCAGTGTCTG
GGCATTGAAACCTTGCCATCCAGTCTAGGGCAACACTCAAAGGCCAGCGCCGAGCTAGAC
TACAAG
INTRON 12 - 13 36,564,909 36,578,518 13,610
GTGAGTACCTCAGCTCCTGCCTGCC..........TCTCTCTCTCTCTCTCCCTTTCCAG
13 EXON 13 36,564,831 36,564,908 0 0 78
GTCTGCTATCTGTGCCACAGCCTCCTGACACTAGCTGGGGTCGTGGTCAGTAGCCAGGAC
ATTACTCCCAATCAATGG
INTRON 13 - 14 36,564,483 36,564,830 348
GTGAGTCTCCCAAGATGCTGAAGCA..........TCCTCCTCCTCCTCCTCCTCCTCAG
14 EXON 14 36,564,330 36,564,482 0 0 153
GGTGAGCTACAGCTGTTGTGCATGCAGTTGGACCGTCATATCAGCACCCATATCCGGGAG
AGCCCTCAGGCCATGCACCGGACCAAACTCAAGGACCTAGCTACCCAGACTTACATCCGC
TGGCAGGACTTGCTGGCCCACTGTCAGCCCCAG
INTRON 14 - 15 36,563,021 36,564,329 1,309
GTGGTGTCCCATAATCCCCTAGACC..........ACAGGCTACTCTCTCTTCTTCACAG
15 EXON 15 36,562,692 36,563,020 0 - 329
GGTCAGTACTTCAGCCCTTGGAAAGACATTTAAAGGGATAAGAGCAAAGTGGCCCAAGGC
TGTGGACTGGAGCAGGAAGAGAACTGTAGGAGGTGAAGAATGGAGCCGGAGGAGGCCCAG
CCTGGTGAAGGTAGACTACTGCCACCACCCAGCGAGGGGTTCTTGTGTCCCTGACCATCC
CCACCCTTGAGCTCCCCCACCTGCACAGCTGTCTCTTCTGTTCTGGGCTCTCCCTGTTGG
CCACTGACTTTCCCACACCTTGCCCTCTCTGCCCATCTTGAATATGAGGTTCATTTGTGC
ATATTAAAGTATTATTTCCAGCATCCATG
3' upstream sequence
GTTCTGGAGTTCCTTCCATCCCTACCCCGAGGGCTCATGCCCAGCACCTAGCCTGACAGA
AGAATCACCTCTGCTTGAGTCAGCCACTACTGGTGTCACCTCAGGTTGTCATGTGACTGG
GGCCTCGGACCCACCCCCTGCACTTGAGGACTCTGTTTCTAGGAGTCCCGCCAGTGACCA
GAATTGCTGGAGCCTGGGCACTCTTGGATGGCCCTGTCTGGGTCCACCTCATCCTGCTAG
GGACGCTATACTGAGAGGATGGTGGATTGGGGCTGTAATTTTGCTTAATTCAATTTAGTG
CTGAGCTCTGAAGTCAACTTCCTAGAGATAGGAGTGGGGGAGGGTGCAAAAGACAGTTTT
GGATCCTGCTGTTTCTTTCCCTGCCTTGTCTCCAGAGCAGTTCCTGGGTCCTAATCTCTA
CTTGCACATCTCGACGTCCTTGATCTGAATGGCTAGAGGAATAAGTGGGCCCCTTTGTAC
CTCCAGAAGCAGCCCCACAGTCCTATCTACTCTCTTACTGTCTGCTCCTCCGACCGAAGC
CATGCTCATGCCTGCCCCCACCCCAGATACTTTCAGGATGAGCTTTGTAAGGGGGAGCCG
GAGGTGACACTCCTGCCACCTTGACTCGTGTCCACTTCTCAGGGGGTGAAGGTCCCAGAG
TGTTCCATGGCTGTTGCACACAATCTTCTCTGTTTCCATGTCCCAGGGTTGGGGCCTGAC
TAGGAGCTAGACAAAGAGTCACCCCCATCTACCTTCCAAGGCCTAATTGAGCACAGCTAC
CCTGCTCTCTGGGTCCCCAGAAGGTCAGGAGCTAGAGGCATCTATTATTTACAGGACAAG
GCAGACTCTGCACAGTACTGGGTACCACAGAGGACATCTTTTCTGTCTCAAAGCCTTTGC
CAAATGAGAAGTGGAAGAAACCCTCCCAGAGCCAGGTGACTTGACTGATAGTTCTGGTTT
CTCTTCCTGGACACATCACAAACTCCTTTGGCATACCCTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Fam178b (ENSMUSG00000046337)
Transcript ID ENSMUST00000170295
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 524 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information