MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Fam178b (ENSMUSG00000046337)

Cross Reference

GO	GO:0003674, GO:0005575, GO:0008150
goslim_goa	GO:0003674, GO:0005575, GO:0008150
MGI_trans_name	Fam178b-008
OTTP	OTTMUSP00000068789
OTTT	OTTMUST00000127235
UniParc	UPI00053BD675
Uniprot/SPTREMBL	A0A0A6YWQ3
Vega_transcript	Fam178b-008, OTTMUST00000127235
Vega_translation	178990, OTTMUSP00000068789

Definition

codon_start:2
protein_id:ENSMUSP00000141644
translation:

XRVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCRAGL
DVGLCLLPKTDLQQLLLLLLERIQEWPGKAAEKSAESCDYCPDAGPAGVTSFLGRENPAS
PAQPAPQPHEAFVPQAVSGH

Chromosome

1

Length
Position(start - end)

22376
36578577 - 36600954

Orient to Chromosome

minus

Link

Location : (1:36578577-36600954)
/

Detail Map

name	D430040D24Rik (ENSMUSG00000087589)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : D430040D24Rik note : RIKEN cDNA D430040D24 gene [Source:MGI Symbol;Acc:MGI:2442526]

name	Fam178b (ENSMUSG00000046337)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Fam178b note : family with sequence similarity 178, member B [Source:MGI Symbol;Acc:MGI:3026913]

name	Gm6428 (ENSMUSG00000089906)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm6428 note : predicted pseudogene 6428 [Source:MGI Symbol;Acc:MGI:3649065]

name	Fam178b (ENSMUSG00000046337)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000170295

name	Fam178b (ENSMUSG00000046337)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000194025

name	Fam178b (ENSMUSG00000046337)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000194839

name	Fam178b (ENSMUSG00000046337)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000114981

name	Fam178b (ENSMUSG00000046337) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48241.1 RefSeq_peptide:NP_001119518 RefSeq_mRNA:NM_001126046.1 RefSeq_peptide_predicted:XP_011236855.1 Vega_transcript:Fam178b-001 Vega_transcript:OTTMUST00000051781 Uniprot/SPTREMBL:E9PXB2 UCSC:uc011wjn.1 EMBL:AC084389 EMBL:AC084391 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Fam178b-001 Vega_translation:178988 Vega_translation:OTTMUSP00000047339 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000047339 OTTT:OTTMUST00000051781 UniParc:UPI0001738F65
definition	note : transcript_id=ENSMUST00000170295 protein_id : ENSMUSP00000132846 translation : MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNMASPSQQAGTPEISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRHPLPCFLDSSRLKPHSPLEELFLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLLTWPPETSSRAFGLLWDLSIDGLFRQPDEDMHFWCPSLQEVKEVFSSLGAYNPALYPQGPFQHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCRAGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNLLALVQFFLDVTPRGRQLRSQLSLVIIARMLGQQESLPFSAEKTQLALLSQLLSLMRPSSLRQCLGIETLPSSLGQHSKASAELDYKVCYLCHSLLTLAGVVVSSQDITPNQWGELQLLCMQLDRHISTHIRESPQAMHRTKLKDLATQTYIRWQDLLAHCQPQGQYFSPWKDI

name	Fam178b (ENSMUSG00000046337) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Fam178b-003 Vega_transcript:OTTMUST00000051779 Uniprot/SPTREMBL:A0A0A6YWE8 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Fam178b-003 Vega_translation:178989 Vega_translation:OTTMUSP00000044561 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000044561 OTTT:OTTMUST00000051779 UniParc:UPI0001889EB2
definition	codon_start : 2 note : transcript_id=ENSMUST00000194025 protein_id : ENSMUSP00000141520 translation : XKLQPLCCALSWVSDHHHNLLALVQFFLDVTPRGRQLRSQLSLVIIARMLGQQESLPFSAEKTQLALLSQLLSLMRPSSLRQCLGIETLPCTGPNSRT

name	Fam178b (ENSMUSG00000046337) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Fam178b-008 Vega_transcript:OTTMUST00000127235 Uniprot/SPTREMBL:A0A0A6YWQ3 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Fam178b-008 Vega_translation:178990 Vega_translation:OTTMUSP00000068789 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000068789 OTTT:OTTMUST00000127235 UniParc:UPI00053BD675
definition	codon_start : 2 note : transcript_id=ENSMUST00000194839 protein_id : ENSMUSP00000141644 translation : XRVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCRAGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKAAEKSAESCDYCPDAGPAGVTSFLGRENPASPAQPAPQPHEAFVPQAVSGH

name	Fam178b (ENSMUSG00000046337) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14885.2 RefSeq_peptide:NP_958753 RefSeq_mRNA:NM_201365.2 Vega_transcript:Fam178b-009 Vega_transcript:OTTMUST00000127237 Uniprot/SPTREMBL:E9PUL8 UCSC:uc007aqv.3 EMBL:AC084389 EMBL:AC084391 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Fam178b-009 Vega_translation:178991 Vega_translation:OTTMUSP00000068694 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000068694 OTTT:OTTMUST00000127237 UniParc:UPI00001E2FFB
definition	note : transcript_id=ENSMUST00000114981 protein_id : ENSMUSP00000124023 translation : MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNMASPSQQAGTPEISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRHPLPCFLDSSRLKPHSPLEELFLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLLTWPPETSSRAFGLLWDLSIDGLFRQPDEDMHFWCPSLQEVKEVFSSLGAYNPALYPQGPFQHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCRAGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNLLALVQFFLDVTPRGRWVLLNHIPRDLSRI

name
type	misc_feature
link
xref
definition	note : contig AC084391.1 1..158328(-1)

name
type	misc_feature
link
xref
definition	note : contig AC084389.1 1..206297(-1)

name	D430040D24Rik (ENSMUSG00000087589)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000051775 Vega_transcript:OTTMUST00000051775 Clone_based_vega_transcript:AC084391.4-001 MGI_trans_name:D430040D24Rik-001 OTTT:OTTMUST00000051775
definition	note : antisense note : transcript_id=ENSMUST00000149224

name	Fam178b (ENSMUSG00000046337)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000051777 Vega_transcript:OTTMUST00000051777 MGI_trans_name:Fam178b-005 OTTT:OTTMUST00000051777
definition	note : processed_transcript note : transcript_id=ENSMUST00000193548

name	Fam178b (ENSMUSG00000046337)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000051776 Vega_transcript:OTTMUST00000051776 MGI_trans_name:Fam178b-004 OTTT:OTTMUST00000051776
definition	note : processed_transcript note : transcript_id=ENSMUST00000193763

name	Fam178b (ENSMUSG00000046337)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000051778 Vega_transcript:OTTMUST00000051778 MGI_trans_name:Fam178b-006 OTTT:OTTMUST00000051778
definition	note : processed_transcript note : transcript_id=ENSMUST00000193155

name	Fam178b (ENSMUSG00000046337)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127236 Vega_transcript:OTTMUST00000127236 MGI_trans_name:Fam178b-010 OTTT:OTTMUST00000127236
definition	note : processed_transcript note : transcript_id=ENSMUST00000195729

name	Gm6428 (ENSMUSG00000089906)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000087260 Vega_transcript:OTTMUST00000087260 Clone_based_vega_transcript:RP23-247A1.1-001 MGI_trans_name:Gm6428-001 OTTT:OTTMUST00000087260
definition	note : processed_pseudogene note : transcript_id=ENSMUST00000161062

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Fam178b (ENSMUSG00000046337)
Transcript ID	ENSMUST00000194839

Reports
substitution
cSNPs	2
Insertion	29
Deletion	33
SNPs	+1kb 36601527(c.-574G>A), 36601656(c.-703G>A), 36601739(c.-786C>A), 36601917(c.-964C>T), 36601944(c.-991A>G), 36602073(c.-1120C>T), 36602074(c.-1121G>A), 36602090(c.-1137G>A), 36602103(c.-1150G>A), 36602111(c.-1158G>C), 36602119(c.-1166G>A), 36602136(c.-1183C>T), 36602267(c.-1314C>T), 36602268(c.-1315G>A), 36602317(c.-1364T>G), 36602321(c.-1368G>C), 36602326(c.-1373T>G), 36602327(c.-1374T>G), 36602328(c.-1375T>G), 36602382(c.-1429T>C), 36602403(c.-1450C>T), 36603221(c.-2268G>A), 36603431(c.-2478A>G), 36603926(c.-2973C>A), 36603990(c.-3037T>C), 36604076(c.-3123T>C), 36604124(c.-3171A>G), 36604218(c.-3265T>C), 36604219(c.-3266T>G), 36604230(c.-3277C>T), 36604245(c.-3292C>T), 36604274(c.-3321T>C), 36604297(c.-3344C>G), 36604711(c.-3758T>A), 36605290(c.-4337C>T), 36605571(c.-4618A>G), 36605842(c.-4889C>A), 36605874(c.-4921T>C), 36605883(c.-4930T>C), 5'UTR 36564480(c.139T>C), CDS 36585968(c.300C>T), 36600553(c.119T>C), 3'UTR 36578537(c.40T>C), INTRON 36564618(c.137-136C>T), 36564631(c.137-149C>T), 36564669(c.136+162A>C), 36564734(c.136+97T>G), 36564810(c.136+21G>A), 36565377(c.59-469C>T), 36565438(c.59-530T>C), 36565441(c.59-533T>A), 36565451(c.59-543A>T), 36565510(c.59-602G>A), 36565657(c.59-749G>A), 36565686(c.59-778C>T), 36565763(c.59-855A>G), 36565925(c.59-1017G>C), 36565961(c.59-1053G>A), 36566149(c.59-1241C>T), 36566156(c.59-1248T>C), 36566271(c.59-1363G>A), 36566476(c.59-1568G>A), 36566537(c.59-1629A>T), 36566538(c.59-1630G>C), 36566684(c.59-1776T>C), 36566728(c.59-1820C>G), 36567014(c.59-2106C>T), 36567326(c.59-2418C>G), 36567449(c.59-2541G>A), 36567466(c.59-2558G>T), 36567644(c.59-2736G>A), 36567661(c.59-2753G>A), 36567824(c.59-2916A>G), 36567890(c.59-2982A>G), 36567891(c.59-2983C>T), 36567943(c.59-3035A>G), 36567979(c.59-3071T>C), 36568029(c.59-3121C>T), 36568030(c.59-3122G>A), 36568111(c.59-3203C>T), 36568124(c.59-3216C>A), 36568245(c.59-3337C>G), 36568404(c.59-3496T>C), 36568468(c.59-3560C>T), 36568490(c.59-3582G>A), 36568492(c.59-3584G>C), 36568603(c.59-3695T>C), 36568611(c.59-3703G>A), 36568714(c.59-3806T>C), 36568899(c.59-3991C>T), 36569198(c.59-4290A>G), 36569245(c.59-4337G>C), 36569254(c.59-4346C>G), 36569287(c.59-4379C>T), 36569346(c.59-4438G>A), 36569356(c.59-4448T>C), 36569434(c.59-4526C>T), 36569459(c.59-4551A>G), 36569460(c.59-4552A>G), 36569585(c.59-4677T>C), 36569785(c.59-4877G>A), 36569868(c.59-4960T>C), 36570025(c.59-5117A>G), 36570289(c.59-5381G>A), 36570440(c.59-5532A>G), 36570577(c.59-5669A>G), 36570852(c.59-5944A>G), 36571206(c.59-6298G>A), 36571228(c.59-6320C>T), 36571649(c.59-6741G>A), 36571683(c.59-6775T>C), 36571786(c.58+6733A>C), 36571839(c.58+6680G>A), 36571951(c.58+6568A>C), 36572090(c.58+6429A>G), 36572511(c.58+6008G>C), 36572761(c.58+5758A>G), 36572847(c.58+5672G>A), 36572860(c.58+5659G>A), 36572938(c.58+5581C>T), 36573782(c.58+4737G>A), 36573952(c.58+4567C>T), 36574673(c.58+3846G>A), 36575485(c.58+3034T>C), 36575725(c.58+2794C>G), 36575843(c.58+2676G>A), 36575955(c.58+2564G>A), 36575981(c.58+2538G>A), 36576417(c.58+2102A>G), 36576568(c.58+1951C>A), 36576569(c.58+1950T>G), 36576744(c.58+1775C>T), 36576761(c.58+1758G>C), 36576785(c.58+1734T>A), 36576786(c.58+1733A>G), 36577105(c.58+1414G>A), 36577559(c.58+960G>A), 36577649(c.58+870G>T), 36577651(c.58+868G>C), 36577764(c.58+755G>C), 36577798(c.58+721G>A), 36577962(c.58+557G>C), 36578069(c.58+450G>C), 36578077(c.58+442T>G), 36578361(c.58+158A>G), 36578404(c.58+115T>C), 36578421(c.58+98T>C), 36578457(c.58+62A>G), 36578505(c.58+14G>C), 36578809(c.353-165A>G), 36578852(c.353-208A>G), 36579035(c.353-391T>C), 36579252(c.353-608T>G), 36579268(c.353-624G>A), 36579342(c.353-698G>T), 36579468(c.353-824G>A), 36579485(c.353-841C>T), 36580008(c.353-1364A>G), 36580012(c.353-1368A>G), 36580171(c.353-1527T>G), 36580365(c.353-1721C>T), 36580672(c.353-2028A>G), 36581168(c.353-2524C>T), 36581171(c.353-2527C>A), 36581178(c.353-2534G>A), 36581774(c.353-3130T>C), 36581842(c.353-3198G>A), 36581995(c.353-3351G>A), 36582126(c.353-3482A>T), 36582146(c.353-3502G>A), 36582197(c.353-3553C>T), 36582269(c.353-3625A>G), 36582330(c.352+3586T>C), 36582517(c.352+3399T>C), 36582544(c.352+3372C>T), 36582545(c.352+3371A>G), 36582624(c.352+3292A>G), 36582713(c.352+3203G>C), 36582746(c.352+3170A>T), 36582747(c.352+3169C>T), 36582871(c.352+3045G>A), 36583039(c.352+2877G>A), 36583077(c.352+2839G>T), 36583112(c.352+2804G>T), 36583133(c.352+2783A>G), 36583200(c.352+2716C>A), 36583251(c.352+2665T>C), 36583278(c.352+2638C>T), 36583327(c.352+2589T>C), 36583365(c.352+2551A>G), 36583407(c.352+2509T>G), 36583409(c.352+2507C>A), 36583903(c.352+2013G>A), 36584004(c.352+1912T>C), 36584020(c.352+1896A>G), 36584185(c.352+1731C>T), 36584457(c.352+1459C>T), 36585399(c.352+517C>T), 36585482(c.352+434T>C), 36585901(c.352+15G>A), 36586041(c.265-38A>C), 36586225(c.265-222A>G), 36586246(c.265-243C>G), 36586279(c.265-276C>T), 36586359(c.265-356T>C), 36586416(c.265-413G>A), 36586477(c.265-474G>A), 36586539(c.265-536T>C), 36586905(c.265-902G>T), 36587029(c.265-1026C>T), 36587230(c.265-1227G>T), 36587568(c.265-1565G>A), 36588055(c.265-2052A>G), 36588194(c.265-2191C>T), 36588245(c.265-2242C>A), 36588385(c.265-2382C>A), 36589047(c.265-3044T>C), 36589313(c.265-3310A>T), 36589334(c.265-3331T>C), 36589441(c.265-3438C>A), 36589442(c.265-3439T>A), 36589496(c.265-3493T>C), 36589558(c.265-3555T>C), 36589582(c.265-3579T>G), 36589595(c.265-3592C>T), 36589597(c.265-3594A>G), 36589989(c.265-3986G>A), 36590127(c.265-4124A>G), 36590257(c.265-4254T>C), 36590741(c.265-4738C>T), 36590891(c.265-4888T>G), 36591186(c.265-5183C>A), 36591266(c.265-5263G>A), 36591331(c.265-5328C>G), 36591335(c.265-5332T>C), 36591431(c.265-5428G>A), 36591546(c.265-5543C>A), 36591559(c.265-5556G>A), 36591577(c.265-5574G>A), 36591603(c.265-5600A>C), 36591609(c.265-5606T>C), 36591818(c.265-5815A>C), 36591906(c.265-5903G>C), 36592043(c.265-6040T>C), 36592049(c.265-6046G>A), 36592059(c.265-6056A>T), 36592143(c.265-6140C>T), 36592219(c.265-6216G>A), 36592226(c.265-6223C>T), 36592256(c.265-6253T>A), 36592271(c.265-6268T>C), 36592304(c.265-6301A>G), 36592320(c.265-6317T>C), 36592383(c.265-6380A>T), 36592462(c.265-6459G>C), 36592807(c.265-6804C>T), 36592870(c.265-6867C>T), 36593063(c.265-7060A>C), 36593196(c.265-7193T>C), 36593218(c.264+7190G>T), 36593445(c.264+6963G>A), 36593455(c.264+6953G>A), 36593593(c.264+6815A>C), 36593669(c.264+6739T>C), 36593820(c.264+6588A>G), 36593852(c.264+6556G>T), 36593981(c.264+6427C>T), 36594157(c.264+6251T>G), 36594195(c.264+6213A>C), 36594342(c.264+6066T>C), 36594537(c.264+5871G>A), 36594573(c.264+5835G>T), 36594597(c.264+5811A>G), 36594601(c.264+5807G>T), 36594602(c.264+5806G>T), 36594712(c.264+5696G>A), 36594839(c.264+5569T>C), 36594841(c.264+5567C>G), 36594858(c.264+5550A>G), 36595523(c.264+4885G>T), 36595645(c.264+4763A>T), 36595929(c.264+4479C>G), 36595930(c.264+4478C>T), 36596202(c.264+4206C>T), 36596534(c.264+3874C>T), 36597082(c.264+3326A>G), 36597085(c.264+3323G>C), 36597136(c.264+3272T>C), 36597176(c.264+3232G>C), 36597178(c.264+3230A>G), 36597236(c.264+3172A>G), 36597256(c.264+3152A>G), 36597275(c.264+3133C>T), 36597276(c.264+3132A>T), 36597302(c.264+3106C>T), 36597498(c.264+2910A>G), 36597499(c.264+2909C>T), 36597556(c.264+2852G>A), 36597696(c.264+2712A>T), 36597791(c.264+2617G>A), 36597848(c.264+2560T>G), 36597897(c.264+2511A>G), 36597910(c.264+2498C>T), 36597928(c.264+2480T>G), 36597975(c.264+2433A>G), 36598037(c.264+2371A>T), 36598059(c.264+2349T>C), 36598062(c.264+2346G>C), 36598489(c.264+1919A>G), 36598655(c.264+1753T>A), 36598751(c.264+1657A>C), 36599183(c.264+1225T>C), 36599454(c.264+954C>T), 36599684(c.264+724C>T), -1kb 36559612(c.18965T>C), 36560042(c.18535G>A), 36560115(c.18462G>T), 36560121(c.18456T>G), 36560128(c.18449T>G), 36560523(c.18054A>G), 36561381(c.17196T>C), 36561624(c.16953C>T), 36561979(c.16598C>G), 36562073(c.16504T>C), 36562231(c.16346G>A), 36562612(c.15965C>T), 36562812(c.15765G>C), 36563135(c.15442A>G), 36563606(c.14971C>T), 36563614(c.14963G>A), 36563770(c.14807T>A), 36563827(c.14750A>G), 36563838(c.14739T>C), 36563944(c.14633T>C), 36563983(c.14594C>A), 36564023(c.14554C>T), 36564042(c.14535T>G), 36564092(c.14485A>G), 36564255(c.*14322G>A),
Insertions	+1kb 36605434 (c.-4483_-4482dupAC), 36605842 (c.-4890_-4889insT), 5'UTR CDS 3'UTR INTRON 36565669 (c.59-762_59-761insTA), 36565794 (c.59-888_59-887dupGC), 36567599 (c.59-2692_59-2691insAAT), 36567824 (c.59-2917_59-2916insGT), 36568462 (c.59-3555dupT), 36568724 (c.59-3818_59-3817dupAC), 36568981 (c.59-4074dupT), 36572095 (c.58+6423_58+6424insT), 36574979 (c.58+3539_58+3540insGGGAG), 36575568 (c.58+2949_58+2950dupGA), 36582126 (c.353-3483_353-3482insTTG), 36582528 (c.352+3384_352+3387dupGCAG), 36584189 (c.352+1723_352+1726dupAAGA), 36585430 (c.352+485dupT), 36586539 (c.265-537_265-536insAACA), 36588290 (c.265-2288_265-2287insA), 36588342 (c.265-2340dupC), 36588349 (c.265-2347_265-2346insC), 36592658 (c.265-6658_265-6656dupCTT), 36593623 (c.264+6784_264+6785insA), 36593782 (c.264+6622_264+6625dupATGT), 36596590 (c.264+3817_264+3818insGAAAA), 36597416 (c.264+2987_264+2991dupGGGAG), 36597653 (c.264+2754_264+2755insT), -1kb 36560129 (c.18447_18448insGTGG), 36560556 (c.18018_18020dupAAA), 36563179 (c.15397_15398insCCT),
Deletions	+1kb 36605064 (c.-4113_-4112delCT), 5'UTR CDS 3'UTR INTRON 36564484 (c.137-11_137-3delCTCCTCCTC), 36564917 (c.59-11_59-10delTC), 36566271 (c.59-1370_59-1364delTCTACGC), 36566698 (c.59-1798_59-1791delCCTGTCTG), 36567350 (c.59-2443delC), 36568091 (c.59-3184delG), 36568175 (c.59-3271_59-3268delTTTA), 36568180 (c.59-3276_59-3273delATTT), 36569628 (c.59-4728_59-4721delCACACACA), 36570701 (c.59-5798_59-5794delTGGGC), 36578879 (c.353-241_353-236delTGTGTG), 36582737 (c.352+3178delT), 36582748 (c.352+3163_352+3167delCAGAA), 36585033 (c.352+880_352+882delCTT), 36589582 (c.265-3580delC), 36589731 (c.265-3729delG), 36591716 (c.265-5714delC), 36591824 (c.265-5827_265-5822delTGGTGG), 36592441 (c.265-6440_265-6439delAT), 36593064 (c.265-7062delT), 36593654 (c.264+6752_264+6753delTA), 36594158 (c.264+6249delC), 36594292 (c.264+6112_264+6115delGTTT), 36595752 (c.264+4654_264+4655delTT), 36596213 (c.264+4194delC), 36597650 (c.264+2752_264+2757delCAAAAA), 36598106 (c.264+2299_264+2301delGGG), 36598460 (c.264+1946_264+1947delTT), 36599522 (c.264+882_264+885delTCCA), 36599959 (c.264+447_264+448delAA), -1kb 36559667 (c.18906_18909delTTGT), 36560318 (c.*18258delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	1
synonymous substitutions	36585968 (p.Cys100Cys),
non-synonymous substitutions	36600553 (p.Val40Ala),
B6 transcript (ENSMUST00000194839)	RVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPVSYTDASILDLMELLCRAGLD VGLCLLPKTDLQQLLLLLLERIQEWPGKAAEKSAESCDYCPDAGPAGVTSFLGRENPASP AQPAPQPHEAFVPQAVSGH*
MSMv4 transcript	RVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLLVRPASYTDASILDLMELLCRAGLD VGLCLLPKTDLQQLLLLLLERIQEWPGKAAEKSAESCDYCPDAGPAGVTSFLGRENPASP AQPAPQPHEAFVPQAVSGH*
homology	99.29 (140 / 140)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Fam178b (ENSMUSG00000046337)
Transcript ID	ENSMUST00000194839


..........GATCCCTTGGGCAGTTGTTGTAAGGGTCTTCCTGCCGTTTCTCTGTTGAA
TTCTTATATGGATATAATCCTCAGTGCCACCAGGAAGCAGGTCACCACCCTTACTTGCAT
CAGCAAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGCGGACATACGATACGATTCCTTTT
CTTACCATCATTGAACAGGCAAAAGAGATGGCTTCTGTGGAAGGAAGACCATCAGAGAGA
TGAGAGGTAGGGTTTCCTGCTTTCGAGGTCCCAGGATGCTGAAGCTGGAGAGCTCCTCTG
AATGTTGAACAAGAGGAACTCAGTGACCACCCCCTCAGTGCAGTGCATACTCTCCCCACA
CCCAGGTGGGCTACAGGGGTAGGAACAATAGGGGTGTGGTGTCCAGCTCAGGTCTGAAAA
GCCACAGCAGTCATGGGAGTACTTCCCTCCTACTCTGGGAAAGGTACTCCTGTCACCATA
TGGAAGAGTCCCATGTGGCAGGGACTCAGGACCCTCCCAATCCATGGTTGTATTGTTGAG
CTGAGAGACAGGTCCCTAGCTTAGTCAAGCCTGATATGAAGGTAGCCCCACCCAGCCTTG
AAGACCACTGTAGAACTACCCCCTAACTGACTGTTTCTGGACCCTTGACTCTCAGAATCT
CAGTGGCATACTTTTGTTGTAATTTTTGTTGTTGTTGTTTTAAGACAGGGTTTCTTTGTA
TAGTCCTGGATGTCCTGGAACTCACTACATAGACTAGGCTGGCCTCAAACTCTTCCTGCT
TCCGCCTCCTGAGTGCTAGAATTAATGACATGCACCCACCAGTATCTGGCTATAATAAAA
GTTTTTAAGCCTCTCCTTGTGGAAGGTCTGTCCTAGCAGATGATGAGGGGACCCTAGACA
AGCAGGTCCTCTGTGCACTCTCTGTTTCTCTGGCTCTGCTTTTCTTTCTCCTTAAGCACC
TCCTACCACCTTAAGCACTTGCATATAATGATATTGTTTCTGTCTTATGT
CAGGGTGCTTGAGAGTGAGGCCAGCCTGGATTCACAGGATCCTCCCCAGGAAGTGGCCTTGGACATTAAGTTGAACTACATCTACAAG
GTGAGCCAAGCTTTCCTTTCCCAAC..........CCTGCTTCTTTGTCTTGCCCTCCAG
TTCCTGACCCTGTGTCTCCTAGTCCGGCCAGCGTCCTACACGGATGCCAGCATCTTGGATCTGATGGAGCTGCTGTGCCGCGCAGGCCTGGATGTAGGGTTGTGCCTGCTGCCCAAGACTGACCTCCAGCAACTCCTGCTCCTGCTGCTGGAGAGAATCCAAGAGTGGCCTGGAAAG
GTACACAGCCTGGGCTCTGCCCCTG..........CAGATTCCCTCTTCTTCTCTCCCAG
GCAGCTGAGAAGTCAGCTGAGTCTTGTGATTATTGTCCGGATGCTGGGCCAGCAGGAGTCACTTCCTTTCTCGGCAGAGAAAACCCAG
GTGAGTCTGCCTCAACAGGACCGGG..........TCACAGTCTCCTTTCTTCTCCCCAG
CTAGCCCTGCTCAGCCAGCTCCTCAGCCTCATGAGGCCTTCGTCCCTCAGGCAGTGTCTGGGCATTGAAACCTTGCCATCCAGTCTAGGGCAACACTCAAAGGCCAGCGCCGAGCTAGACTACAAG
GTGAGTACCTCAGCTCCTGCCTGCC..........TCTCTCTCTCTCTCTCCCTTTCCAG
GTCTGCTATCTGTGCCACAGCCTCCTGACACTAGCTGGGGTCGTGGTCAGTAGCCAGGACATTACTCCCAATCAATGG
GTGAGTCTCCCAAGATGCTGAAGCA..........TCCTCCTCCTCCTCCTCCTCCTCAG
GGTGAGCTACAGCTGTTGTGCATGCAGTTGGACCGTCATATCAGCACCCATATCCGGGAGAGCCCTCAGGCCATGCACCGGACCAAACTCAAGGACCTAGCTACCCAGACTTACATCCGCTGGCAGGACTTGCTGGCCCACTGTCAGCCCCAGGT
GGTGTCCCATAATCCCCTAGACCTGGGAGGAAAGGGAAGTGGTCAGTCAGTGAGCGGGGC
TTGGCAGATCCAACAGTCCATCCACCCCCACTGCAGCTGCTGGACTCCAAAGGGAAAGGG
TGGAGTGGGCAAGCATGATGCAGGGTGGGGATGTCTCAGGGGACCTTCAATCCTAATCCA
CGACCCAGGGAGGGGATGCAGAAGGGAGCATAGGGAGGCCTGTTTATGAACAAATGCAGA
GAAACACAGCCCTGAAGAACTGAGCAATACCAGTTTGCCATGAATGACGGCCAGGAAGGG
GCACTCGAGGCAACAGCTGCCCACCTCCTGTCTACTTGTCCTGGAGACCTCAGCTGGCTA
CTTGCTGTGTTAAGAGCATTTCCCGGGCTGCTCTGTTTTTTGTTTTTGTTTTGTTGGTTG
GTTTTTTTGAGGGAGCACAGGGAGAGTACTTGAACCCAAAGCCTTATGCATGCTCAGCAC
GTGCTCCACCCCCCCTCCACGTGGCCAGCATCCACTCTCACTTCTGTAGGAGTAACCTCT
GTTCCTGGAATTGCCCCAGGTCCTCTAGGTAGTAACATGTTATACTAAAGTTTACAGAAT
GAAGATTTTTTTCTGCAGGAGCCTGAGGAGCCCTCGTGAAGCAGGGATGGATAGAAACCC
ATTTTACAGATGAGCAAAGTATCTAGAAGCTCTGAGGGTCAATAGCTTGCCCCATCATGC
ATGAAGCTTGGGAGGATGTGAGGATGGGGGCTCACAGCCAGCGTCACTCCTTTGGCACAA
AGCGGCCCCATCTGCACACCCTCTCCACCCCCAGTTCTCCAACAAGCAGTGCCCTGCTGG
GCTGGCCCTGAGCCCCCAAGCCCTTAATGGGGACAGCTGGACTTTGCTCCCTGCTTGCCT
CTCCCTGACTCCTCTCTTACAGCTCCCTCTAACCTCTGACTTGAGGCTGACACACTGGCC
ACAGGCTGTGGCTTGGTGCTCAAATTTCACAAGTCCCTGA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GATCCCTTGGGCAGTTGTTGTAAGGGTCTTCCTGCCGTTTCTCTGTTGAA TTCTTATATGGATATAATCCTCAGTGCCACCAGGAAGCAGGTCACCACCCTTACTTGCAT CAGCAAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGCGGACATACGATACGATTCCTTTT CTTACCATCATTGAACAGGCAAAAGAGATGGCTTCTGTGGAAGGAAGACCATCAGAGAGA TGAGAGGTAGGGTTTCCTGCTTTCGAGGTCCCAGGATGCTGAAGCTGGAGAGCTCCTCTG AATGTTGAACAAGAGGAACTCAGTGACCACCCCCTCAGTGCAGTGCATACTCTCCCCACA CCCAGGTGGGCTACAGGGGTAGGAACAATAGGGGTGTGGTGTCCAGCTCAGGTCTGAAAA GCCACAGCAGTCATGGGAGTACTTCCCTCCTACTCTGGGAAAGGTACTCCTGTCACCATA TGGAAGAGTCCCATGTGGCAGGGACTCAGGACCCTCCCAATCCATGGTTGTATTGTTGAG CTGAGAGACAGGTCCCTAGCTTAGTCAAGCCTGATATGAAGGTAGCCCCACCCAGCCTTG AAGACCACTGTAGAACTACCCCCTAACTGACTGTTTCTGGACCCTTGACTCTCAGAATCT CAGTGGCATACTTTTGTTGTAATTTTTGTTGTTGTTGTTTTAAGACAGGGTTTCTTTGTA TAGTCCTGGATGTCCTGGAACTCACTACATAGACTAGGCTGGCCTCAAACTCTTCCTGCT TCCGCCTCCTGAGTGCTAGAATTAATGACATGCACCCACCAGTATCTGGCTATAATAAAA GTTTTTAAGCCTCTCCTTGTGGAAGGTCTGTCCTAGCAGATGATGAGGGGACCCTAGACA AGCAGGTCCTCTGTGCACTCTCTGTTTCTCTGGCTCTGCTTTTCTTTCTCCTTAAGCACC TCCTACCACCTTAAGCACTTGCATATAATGATATTGTTTCTGTCTTATGT
1	EXON 1	36600867	36600954	-	0	88	CAGGGTGCTTGAGAGTGAGGCCAGCCTGGATTCACAGGATCCTCCCCAGGAAGTGGCCTT GGACATTAAGTTGAACTACATCTACAAG
	INTRON 1 - 2	36600585	36600866			282	GTGAGCCAAGCTTTCCTTTCCCAAC..........CCTGCTTCTTTGTCTTGCCCTCCAG
2	EXON 2	36600408	36600584	0	0	177	TTCCTGACCCTGTGTCTCCTAGTCCGGCCAGCGTCCTACACGGATGCCAGCATCTTGGAT CTGATGGAGCTGCTGTGCCGCGCAGGCCTGGATGTAGGGTTGTGCCTGCTGCCCAAGACT GACCTCCAGCAACTCCTGCTCCTGCTGCTGGAGAGAATCCAAGAGTGGCCTGGAAAG
	INTRON 2 - 3	36586004	36600407			14404	GTACACAGCCTGGGCTCTGCCCCTG..........CAGATTCCCTCTTCTTCTCTCCCAG
3	EXON 3	36585916	36586003	0	1	88	GCAGCTGAGAAGTCAGCTGAGTCTTGTGATTATTGTCCGGATGCTGGGCCAGCAGGAGTC ACTTCCTTTCTCGGCAGAGAAAACCCAG
	INTRON 3 - 4	36578645	36585915			7271	GTGAGTCTGCCTCAACAGGACCGGG..........TCACAGTCTCCTTTCTTCTCCCCAG
4	EXON 4	36578519	36578644	1	-	126	CTAGCCCTGCTCAGCCAGCTCCTCAGCCTCATGAGGCCTTCGTCCCTCAGGCAGTGTCTG GGCATTGAAACCTTGCCATCCAGTCTAGGGCAACACTCAAAGGCCAGCGCCGAGCTAGAC TACAAG
	INTRON 4 - 5	36564909	36578518			13610	GTGAGTACCTCAGCTCCTGCCTGCC..........TCTCTCTCTCTCTCTCCCTTTCCAG
5	EXON 5	36564831	36564908	-	-	78	GTCTGCTATCTGTGCCACAGCCTCCTGACACTAGCTGGGGTCGTGGTCAGTAGCCAGGAC ATTACTCCCAATCAATGG
	INTRON 5 - 6	36564483	36564830			348	GTGAGTCTCCCAAGATGCTGAAGCA..........TCCTCCTCCTCCTCCTCCTCCTCAG
6	EXON 6	36564328	36564482	-	-	155	GGTGAGCTACAGCTGTTGTGCATGCAGTTGGACCGTCATATCAGCACCCATATCCGGGAG AGCCCTCAGGCCATGCACCGGACCAAACTCAAGGACCTAGCTACCCAGACTTACATCCGC TGGCAGGACTTGCTGGCCCACTGTCAGCCCCAGGT
	3' upstream sequence						GGTGTCCCATAATCCCCTAGACCTGGGAGGAAAGGGAAGTGGTCAGTCAGTGAGCGGGGC TTGGCAGATCCAACAGTCCATCCACCCCCACTGCAGCTGCTGGACTCCAAAGGGAAAGGG TGGAGTGGGCAAGCATGATGCAGGGTGGGGATGTCTCAGGGGACCTTCAATCCTAATCCA CGACCCAGGGAGGGGATGCAGAAGGGAGCATAGGGAGGCCTGTTTATGAACAAATGCAGA GAAACACAGCCCTGAAGAACTGAGCAATACCAGTTTGCCATGAATGACGGCCAGGAAGGG GCACTCGAGGCAACAGCTGCCCACCTCCTGTCTACTTGTCCTGGAGACCTCAGCTGGCTA CTTGCTGTGTTAAGAGCATTTCCCGGGCTGCTCTGTTTTTTGTTTTTGTTTTGTTGGTTG GTTTTTTTGAGGGAGCACAGGGAGAGTACTTGAACCCAAAGCCTTATGCATGCTCAGCAC GTGCTCCACCCCCCCTCCACGTGGCCAGCATCCACTCTCACTTCTGTAGGAGTAACCTCT GTTCCTGGAATTGCCCCAGGTCCTCTAGGTAGTAACATGTTATACTAAAGTTTACAGAAT GAAGATTTTTTTCTGCAGGAGCCTGAGGAGCCCTCGTGAAGCAGGGATGGATAGAAACCC ATTTTACAGATGAGCAAAGTATCTAGAAGCTCTGAGGGTCAATAGCTTGCCCCATCATGC ATGAAGCTTGGGAGGATGTGAGGATGGGGGCTCACAGCCAGCGTCACTCCTTTGGCACAA AGCGGCCCCATCTGCACACCCTCTCCACCCCCAGTTCTCCAACAAGCAGTGCCCTGCTGG GCTGGCCCTGAGCCCCCAAGCCCTTAATGGGGACAGCTGGACTTTGCTCCCTGCTTGCCT CTCCCTGACTCCTCTCTTACAGCTCCCTCTAACCTCTGACTTGAGGCTGACACACTGGCC ACAGGCTGTGGCTTGGTGCTCAAATTTCACAAGTCCCTGA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Fam178b (ENSMUSG00000046337)
Transcript ID	ENSMUST00000194839

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 140 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information