VariantTable
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name
Col5a2 (ENSMUSG00000026042)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Col5a2
note
: collagen, type V, alpha 2 [Source:MGI Symbol;Acc:MGI:88458]
name
Col5a2 (ENSMUSG00000026042)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000086430
name
Col5a2 (ENSMUSG00000026042)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS35555.1
Uniprot/SWISSPROT:
Q3U962
RefSeq_peptide:
NP_031763
RefSeq_mRNA:
NM_007737.2
Vega_transcript:
Col5a2-001
Vega_transcript:
OTTMUST00000050640
UCSC:uc007awr.1
Fantom:
4631407M23
Fantom:
A730041E01
Fantom:
I420043N14
Fantom:
I830043G12
Fantom:
M421012K06
Fantom:
M5C1014A09
EMBL:
AK132413
EMBL:
AK139130
EMBL:
AK147220
EMBL:
AK147328
EMBL:
AK151929
EMBL:
AK160008
EMBL:
BC043696
EMBL:
BC055077
EMBL:
L02918
GO:
GO:0001501
GO:
GO:0001503
GO:
GO:0005201
GO:
GO:0005581
GO:
GO:0005588
GO:
GO:0005588
GO:
GO:0030199
GO:
GO:0031012
GO:
GO:0043588
GO:
GO:0046332
GO:
GO:0046872
GO:
GO:0048592
GO:
GO:0048592
GO:
GO:0071230
GO:
GO:1903225
GO:
GO:1903225
MGI_trans_name:
Col5a2-001
Vega_translation:
179200
Vega_translation:
OTTMUSP00000023677
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005578
goslim_goa:
GO:0008150
goslim_goa:
GO:0030198
goslim_goa:
GO:0043167
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
protein_id:
AAA37440.1
protein_id:
AAH43696.1
protein_id:
AAH55077.1
protein_id:
BAE21154.1
protein_id:
BAE23896.1
protein_id:
BAE27775.1
protein_id:
BAE27850.1
protein_id:
BAE30805.1
protein_id:
BAE35556.1
OTTP:
OTTMUSP00000023677
OTTT:
OTTMUST00000050640
Reactome:
R-MMU-1266738
Reactome:
R-MMU-1442490
Reactome:
R-MMU-1474228
Reactome:
R-MMU-1474244
Reactome:
R-MMU-1474290
Reactome:
R-MMU-162582
Reactome:
R-MMU-1650814
Reactome:
R-MMU-186797
Reactome:
R-MMU-2022090
Reactome:
R-MMU-216083
Reactome:
R-MMU-3000170
Reactome:
R-MMU-3000171
Reactome:
R-MMU-3000178
Reactome:
R-MMU-375165
Reactome:
R-MMU-419037
Reactome:
R-MMU-422475
UniParc:
UPI00001C21E2
definition
note
: transcript_id=ENSMUST00000086430
protein_id
: ENSMUSP00000083620
translation
: MMANWVGARPLLILSVLLGYCVSIKAQEQENDEYDEEIACTQHGQMYLNRDIWKPSPCQICVCDNGAILCDKIECPEVLNCANPITPTGECCPVCPQTGGGDTSFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGDRGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGVGPAGPPGEPGEPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNTGEVGFSGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAVGTDGTPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDLGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKAGDQGVPGEPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPAGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDENMPDPLPEFTEDQAAPDDTNKTDPGIHVTLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAEDAIKVYCNMETGETCISANPASVPRKTWWASKSPDNKPVWYGLDMNRGSQFTYGDYQSPNTAITQMTFLRLLSKEASQNLTYICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFRYTVLQDTCSKRNGNVGKTIFEYRTQNVARLPIIDVGPVDIGNADQEFGLDIGPVCFM
name
type
misc_feature
link
xref
definition
note
: contig AC140189.3 1..144572(-1)
name
Col5a2 (ENSMUSG00000026042)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000050641
Vega_transcript:
OTTMUST00000050641
MGI_trans_name:
Col5a2-002
OTTT:
OTTMUST00000050641
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000134681
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.