VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Sgce (ENSMUSG00000004631)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Sgce
note
: sarcoglycan, epsilon [Source:MGI Symbol;Acc:MGI:1329042]
name
Sgce (ENSMUSG00000004631)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000115577
name
Sgce (ENSMUSG00000004631)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000115579
name
Sgce (ENSMUSG00000004631)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000126151
name
Sgce (ENSMUSG00000004631)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000004750
name
Sgce (ENSMUSG00000004631)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000090686
name
Sgce (ENSMUSG00000004631)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000133306
name
Sgce (ENSMUSG00000004631)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000101677
name
Sgce (ENSMUSG00000004631)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000123907
name
Sgce (ENSMUSG00000004631)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS51718.1
Uniprot/SWISSPROT:
O70258
RefSeq_peptide:
NP_001123660
RefSeq_mRNA:
NM_001130188.1
RefSeq_peptide_predicted:
XP_006505082.1
RefSeq_peptide_predicted:
XP_006505083.1
RefSeq_peptide_predicted:
XP_006505084.1
RefSeq_peptide_predicted:
XP_006505085.1
Vega_transcript:
OTTMUST00000056129
Vega_transcript:
Sgce-002
UCSC:uc009avq.2
Fantom:
2810021N11
EMBL:
AF031919
EMBL:
AF103877
EMBL:
AK076102
EMBL:
BC012665
GO:
GO:0005515
GO:
GO:0005794
GO:
GO:0005856
GO:
GO:0005886
GO:
GO:0005887
GO:
GO:0016010
GO:
GO:0016010
GO:
GO:0016012
GO:
GO:0030425
GO:
GO:0032590
GO:
GO:0042383
MGI_trans_name:
Sgce-002
Vega_translation:
196470
Vega_translation:
OTTMUSP00000073198
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005794
goslim_goa:
GO:0005856
goslim_goa:
GO:0005886
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
protein_id:
AAC14020.1
protein_id:
AAF21895.1
protein_id:
AAH12665.1
protein_id:
BAC36184.1
OTTP:
OTTMUSP00000073198
OTTT:
OTTMUST00000056129
UniParc:
UPI00005639D5
definition
note
: transcript_id=ENSMUST00000115577
protein_id
: ENSMUSP00000111240
translation
: MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTAFLLSCADGINGTVNWKTKQASSFSISRKLAAGKKDVYTLFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEVSNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQVSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCCRREGVEKRDMQTPDIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPTHTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTGKWYP
name
Sgce (ENSMUSG00000004631)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS51716.1
Uniprot/SWISSPROT:
O70258
RefSeq_peptide:
NP_035490
RefSeq_mRNA:
NM_011360.3
Vega_transcript:
OTTMUST00000056087
Vega_transcript:
Sgce-001
UCSC:uc009avp.2
Fantom:
2810021N11
EMBL:
AF031919
EMBL:
AF103877
EMBL:
AK076102
EMBL:
BC012665
GO:
GO:0005515
GO:
GO:0005794
GO:
GO:0005856
GO:
GO:0005886
GO:
GO:0005887
GO:
GO:0016010
GO:
GO:0016012
GO:
GO:0030425
GO:
GO:0032590
GO:
GO:0042383
MGI_trans_name:
Sgce-001
Vega_translation:
196471
Vega_translation:
OTTMUSP00000026910
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005794
goslim_goa:
GO:0005856
goslim_goa:
GO:0005886
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
protein_id:
AAC14020.1
protein_id:
AAF21895.1
protein_id:
AAH12665.1
protein_id:
BAC36184.1
OTTP:
OTTMUSP00000026910
OTTT:
OTTMUST00000056087
UniParc:
UPI0001548822
definition
note
: transcript_id=ENSMUST00000115579
protein_id
: ENSMUSP00000111242
translation
: MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTVYTLFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEVSNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQVSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCCRREGVEKRDMQTPDIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPTHTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTGKWYP
name
Sgce (ENSMUSG00000004631)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000139523
Vega_transcript:
Sgce-011
Uniprot/SPTREMBL:
F6WKE4
UCSC:uc009avp.2
GO:
GO:0005887
GO:
GO:0016010
GO:
GO:0016012
MGI_trans_name:
Sgce-011
Vega_translation:
196472
Vega_translation:
OTTMUSP00000073199
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0043234
OTTP:
OTTMUSP00000073199
OTTT:
OTTMUST00000139523
definition
note
: transcript_id=ENSMUST00000126151
protein_id
: ENSMUSP00000120718
translation
: MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTGEVSNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQVSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCCRREGVEKRDMQTPDIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPTHTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTGKWYP
name
Sgce (ENSMUSG00000004631)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
RefSeq_peptide:
NP_001123661
RefSeq_mRNA:
NM_001130189.1
RefSeq_peptide_predicted:
XP_006505086.1
RefSeq_peptide_predicted:
XP_011239352.1
Vega_transcript:
OTTMUST00000056132
Vega_transcript:
Sgce-005
Uniprot/SPTREMBL:
F8WGM3
UCSC:uc009avs.2
EMBL:
AC084315
EMBL:
AC091395
GO:
GO:0005887
GO:
GO:0016010
GO:
GO:0016012
MGI_trans_name:
Sgce-005
Vega_translation:
196473
Vega_translation:
OTTMUSP00000026940
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0043234
OTTP:
OTTMUSP00000026940
OTTT:
OTTMUST00000056132
UniParc:
UPI00017AA3AC
definition
note
: transcript_id=ENSMUST00000004750
protein_id
: ENSMUSP00000004750
translation
: MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTVYTLFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEVSNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQVSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCCRREGVIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPTHTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTGDFRLTTFQRFEVNGIPEERKLTEAMSL
name
Sgce (ENSMUSG00000004631)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
RefSeq_peptide_predicted:
XP_011239352.1
Vega_transcript:
OTTMUST00000056134
Vega_transcript:
Sgce-007
Uniprot/SPTREMBL:
D3Z572
UCSC:uc009avp.2
EMBL:
AC084315
EMBL:
AC091395
GO:
GO:0005887
GO:
GO:0016010
GO:
GO:0016012
MGI_trans_name:
Sgce-007
Vega_translation:
196474
Vega_translation:
OTTMUSP00000026941
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0043234
OTTP:
OTTMUSP00000026941
OTTT:
OTTMUST00000056134
UniParc:
UPI00015AA381
definition
note
: transcript_id=ENSMUST00000090686
protein_id
: ENSMUSP00000088185
translation
: MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTVYTLFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEVSNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQVSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCCRREGVIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPTHTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTGKWYP
name
Sgce (ENSMUSG00000004631)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS51717.1
RefSeq_peptide:
NP_001123662
RefSeq_mRNA:
NM_001130190.1
Vega_transcript:
OTTMUST00000056131
Vega_transcript:
Sgce-004
Uniprot/SPTREMBL:
F6R6P2
UCSC:uc009avr.2
GO:
GO:0005887
GO:
GO:0016010
GO:
GO:0016012
MGI_trans_name:
Sgce-004
Vega_translation:
196475
Vega_translation:
OTTMUSP00000026939
OTTP:
OTTMUSP00000026939
OTTT:
OTTMUST00000056131
UniParc:
UPI00015DEF49
definition
note
: transcript_id=ENSMUST00000133306
protein_id
: ENSMUSP00000121964
translation
: MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTVYTLFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEVSNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQVSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCCRREGVEKRDMQTPDIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPTHTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTELSPLLLLSGI
name
Sgce (ENSMUSG00000004631)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS51715.1
RefSeq_peptide:
NP_001123663
RefSeq_mRNA:
NM_001130191.1
RefSeq_peptide_predicted:
XP_011239352.1
Vega_transcript:
OTTMUST00000056130
Vega_transcript:
Sgce-003
Uniprot/SPTREMBL:
E9PX46
UCSC:uc009avt.2
EMBL:
AC084315
EMBL:
AC091395
GO:
GO:0005887
GO:
GO:0016010
GO:
GO:0016012
MGI_trans_name:
Sgce-003
Vega_translation:
196476
Vega_translation:
OTTMUSP00000026938
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0043234
OTTP:
OTTMUSP00000026938
OTTT:
OTTMUST00000056130
UniParc:
UPI00017AA3AB
definition
note
: transcript_id=ENSMUST00000101677
protein_id
: ENSMUSP00000099200
translation
: MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTVYTLFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEVSNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQVSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCCRREGVIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPTHTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTELSPLLLLSGI
name
type
misc_feature
link
xref
definition
note
: contig AC091395.4 4225..163323(1)
name
Sgce (ENSMUSG00000004631)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000056136
Vega_transcript:
OTTMUST00000056136
MGI_trans_name:
Sgce-009
OTTT:
OTTMUST00000056136
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000153284
name
Sgce (ENSMUSG00000004631)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000056133
Vega_transcript:
OTTMUST00000056133
MGI_trans_name:
Sgce-006
OTTT:
OTTMUST00000056133
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000128109
name
Sgce (ENSMUSG00000004631)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000139526
Vega_transcript:
OTTMUST00000139526
MGI_trans_name:
Sgce-013
OTTT:
OTTMUST00000139526
definition
note
: processed_transcript
note
: transcript_id=ENSMUST00000139029
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.