VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Sptlc1 (ENSMUSG00000021468)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Sptlc1
note
: serine palmitoyltransferase, long chain base subunit 1 [Source:MGI Symbol;Acc:MGI:1099431]
name
Sptlc1 (ENSMUSG00000021468)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000021920
name
Sptlc1 (ENSMUSG00000021468)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS26521.1
Uniprot/SWISSPROT:
O35704
RefSeq_peptide:
NP_033295
RefSeq_mRNA:
NM_009269.2
UCSC:uc007qnk.2
Fantom:
A230104F05
Fantom:
D230035O14
Fantom:
D230049O15
Fantom:
E030036H05
EMBL:
AF003823
EMBL:
AK053207
EMBL:
AK079578
EMBL:
AK084391
EMBL:
AK084445
EMBL:
BC046323
EMBL:
X95641
GO:
GO:0004758
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0006686
GO:
GO:0016021
GO:
GO:0017059
GO:
GO:0017059
GO:
GO:0030170
GO:
GO:0035339
GO:
GO:0035339
GO:
GO:0046511
GO:
GO:0046512
GO:
GO:0046513
MGI_trans_name:
Sptlc1-201
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005783
goslim_goa:
GO:0006629
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0034641
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0044281
protein_id:
AAC02264.1
protein_id:
AAH46323.1
protein_id:
BAC35310.1
protein_id:
BAC37690.1
protein_id:
BAC39172.1
protein_id:
BAC39185.1
protein_id:
CAA64897.1
Reactome:
R-MMU-1430728
Reactome:
R-MMU-1660661
Reactome:
R-MMU-428157
Reactome:
R-MMU-556833
UniParc:
UPI000000B9B7
definition
note
: transcript_id=ENSMUST00000021920
protein_id
: ENSMUSP00000021920
translation
: MATVAEQWVLVEMVQALYEAPAYHLILEGILILWIIRLVFSKTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSKNHPALNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKATAFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKTEEAIIYSYGFSTIASAIPAYSKRGDIIFVDSAACFAIQKGLQASRSDIKLFKHNDVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPDIFAVLKKKCQNIHKSLQGVSGLKVVGESLSPALHLQLEESTGSREKDVKLLQAIVDQCMDKGIALTQARYLDKEEKCLPPPSIRVVVTVEQTEEELQRAASTIREAAQAVLL
name
type
misc_feature
link
xref
definition
note
: contig AC159201.2 1..148234(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.