VariantTable
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name
Pdlim7 (ENSMUSG00000021493)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Pdlim7
note
: PDZ and LIM domain 7 [Source:MGI Symbol;Acc:MGI:1914649]
name
Pdlim7 (ENSMUSG00000021493)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000155098
name
Pdlim7 (ENSMUSG00000021493)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000046246
name
Pdlim7 (ENSMUSG00000021493)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS49275.1
Uniprot/SWISSPROT:
Q3TJD7
Vega_transcript:
OTTMUST00000082030
Vega_transcript:
Pdlim7-004
UCSC:uc007qrg.3
Fantom:
0710007K04
Fantom:
1110003B01
Fantom:
2310073F10
Fantom:
I530016H17
EMBL:
AK003019
EMBL:
AK003338
EMBL:
AK010141
EMBL:
AK167476
EMBL:
BC045528
EMBL:
BC049565
GO:
GO:0001503
GO:
GO:0001725
GO:
GO:0001726
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0005925
GO:
GO:0007275
GO:
GO:0008270
GO:
GO:0015629
GO:
GO:0030036
GO:
GO:0030154
MGI_trans_name:
Pdlim7-004
Vega_translation:
214577
Vega_translation:
OTTMUSP00000043944
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0005856
goslim_goa:
GO:0007010
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
protein_id:
AAH45528.1
protein_id:
AAH49565.1
protein_id:
BAB22725.1
protein_id:
BAB26726.1
protein_id:
BAC25017.1
protein_id:
BAE39558.1
OTTP:
OTTMUSP00000043944
OTTT:
OTTMUST00000082030
UniParc:
UPI000024E58D
definition
note
: transcript_id=ENSMUST00000155098
protein_id
: ENSMUSP00000120465
translation
: MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPTDSTLRQNGQLLRQPVPDASKQRLMEDTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSSQVPRTEAPAPASTIPQESWPGPTTPSPTSRPPWAVDPAFAERYAPDKTSTVLTRHSQPATPTPLQNRTSIVQAAAGGGTGGGSNNGKTPVCHQCHKIIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPSCYDVRYAPNCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGAPYCERDYEKMFGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINLEGKTFYSKKDKPLCKSHAFSHV
name
Pdlim7 (ENSMUSG00000021493)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS49275.1
Uniprot/SWISSPROT:
Q3TJD7
RefSeq_peptide:
NP_001107560
RefSeq_mRNA:
NM_001114088.2
Vega_transcript:
OTTMUST00000082027
Vega_transcript:
Pdlim7-001
UCSC:uc007qrg.3
Fantom:
0710007K04
Fantom:
1110003B01
Fantom:
2310073F10
Fantom:
I530016H17
EMBL:
AK003019
EMBL:
AK003338
EMBL:
AK010141
EMBL:
AK167476
EMBL:
BC045528
EMBL:
BC049565
GO:
GO:0001503
GO:
GO:0001725
GO:
GO:0001726
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0005925
GO:
GO:0005925
GO:
GO:0007275
GO:
GO:0008270
GO:
GO:0015629
GO:
GO:0015629
GO:
GO:0030036
GO:
GO:0030154
GO:
GO:0045669
MGI_trans_name:
Pdlim7-001
Vega_translation:
214578
Vega_translation:
OTTMUSP00000043941
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0005856
goslim_goa:
GO:0007010
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
protein_id:
AAH45528.1
protein_id:
AAH49565.1
protein_id:
BAB22725.1
protein_id:
BAB26726.1
protein_id:
BAC25017.1
protein_id:
BAE39558.1
OTTP:
OTTMUSP00000043941
OTTT:
OTTMUST00000082027
UniParc:
UPI000024E58D
definition
note
: transcript_id=ENSMUST00000046246
protein_id
: ENSMUSP00000047173
translation
: MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPTDSTLRQNGQLLRQPVPDASKQRLMEDTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSSQVPRTEAPAPASTIPQESWPGPTTPSPTSRPPWAVDPAFAERYAPDKTSTVLTRHSQPATPTPLQNRTSIVQAAAGGGTGGGSNNGKTPVCHQCHKIIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPSCYDVRYAPNCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGAPYCERDYEKMFGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINLEGKTFYSKKDKPLCKSHAFSHV
name
type
misc_feature
link
xref
definition
note
: contig CT009762.8 1..175032(-1)
name
Pdlim7 (ENSMUSG00000021493)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000082032
Vega_transcript:
OTTMUST00000082032
UCSC:uc007qrf.3
MGI_trans_name:
Pdlim7-006
OTTT:
OTTMUST00000082032
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000153230
name
Pdlim7 (ENSMUSG00000021493)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000082031
Vega_transcript:
OTTMUST00000082031
UCSC:uc007qrf.3
MGI_trans_name:
Pdlim7-005
OTTT:
OTTMUST00000082031
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000128910
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Annotation:
Gene
mRNA
CDS
genetic markers
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RefSeq genes :
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Gene, mRNA, CDS :
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MSM BAC end pairs :
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B6N BAC end pairs :
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MSMv4 :
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show
JF1v3 :
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show
KJRv1 :
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show
SWNv1 :
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show
CHDv1 :
not show
show
NJLv1 :
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show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
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show
PGNv1 :
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show
Click to browse alignment view.
BAC clone ordering.