VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Sema4f (ENSMUSG00000000627)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Sema4f
note
: sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain [Source:MGI Symbol;Acc:MGI:1340055]
name
Sema4f (ENSMUSG00000000627)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000000641
name
Sema4f (ENSMUSG00000000627)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000113982
name
Sema4f (ENSMUSG00000000627)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000203271
name
Sema4f (ENSMUSG00000000627)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS20264.1
Uniprot/SWISSPROT:
Q9Z123
RefSeq_peptide:
NP_035480
RefSeq_mRNA:
NM_011350.3
Vega_transcript:
OTTMUST00000050182
Vega_transcript:
Sema4f-001
UCSC:uc012ent.1
EMBL:
AB021291
EMBL:
AB022316
EMBL:
BC094567
EMBL:
CH466523
GO:
GO:0005515
GO:
GO:0005783
GO:
GO:0005783
GO:
GO:0005886
GO:
GO:0007411
GO:
GO:0016021
GO:
GO:0016021
GO:
GO:0030517
GO:
GO:0030517
GO:
GO:0031290
GO:
GO:0031290
GO:
GO:0045202
GO:
GO:0045202
GO:
GO:0045211
GO:
GO:0045211
MGI_trans_name:
Sema4f-001
Vega_translation:
197895
Vega_translation:
OTTMUSP00000023388
goslim_goa:
GO:0000902
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005783
goslim_goa:
GO:0005886
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
protein_id:
AAH94567.1
protein_id:
BAA75630.1
protein_id:
BAA75634.1
protein_id:
EDK99043.1
OTTP:
OTTMUSP00000023388
OTTT:
OTTMUST00000050182
UniParc:
UPI0000020AC2
definition
note
: transcript_id=ENSMUST00000000641
protein_id
: ENSMUSP00000000641
translation
: MLARAERPRPGPRPPPVSLFPPPSSLLLLLLAMLSAPVCGRVPRSVPRTSLPISEADSYLTRFAAPHTYNYSALLVDPASHTLYVGARDSIFALTLPFSGEKPRRIDWMVPETHRQNCRKKGKKEDECHNFIQILAIANASHLLTCGTFAFDPKCGVIDVSSFQQVERLESGRGKCPFEPAQRSAAVMAGGVLYTATVKNFLGTEPIISRAVGRAEDWIRTETLSSWLNAPAFVAAMVLSPAEWGDEDGDDEIFFFFTETSRVLDSYERIKVPRVARVCAGDLGGRKTLQQRWTTFLKADLLCPGPEHGRASGVLQDMTELRPQPGAGTPLFYGIFSSQWEGAAISAVCAFRPQDIRAVLNGPFRELKHDCNRGLPVMDNEVPQPRPGECITNNMKFQQFGSSLSLPDRVLTFIRDHPLMDRPVFPADGRPLLVTTDTAYLRVVAHRVTSLSGKEYDVLYLGTEDGHLHRAVRIGAQLSVLEDLALFPETQPVESMKLYHDWLLVGSHTEVTQVNTSNCGRLQSCSECILAQDPVCAWSFRLDACVAHAGEHRGMVQDIESADVSSLCPKEPGEHPVVFEVPVATVGHVVLPCSPSSAWASCVWHQPSGVTSLTPRRDGLEVVVTPGAMGAYACECQEGGAARVVAAYSLVWGSQRGPANRAHTVVGAGLVGFFLGVLAASLTLLLIGRRQQRRRQRELLARDKVGLDLGAPPSGTTSYSQDPPSPSPEDERLPLALGKRGSGFGGFPPPFLLDSCPSPAHIRLTGAPLATCDETSI
name
Sema4f (ENSMUSG00000000627)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS51816.1
RefSeq_peptide:
NP_001106953
RefSeq_mRNA:
NM_001113481.1
Uniprot/SPTREMBL:
D3YWP2
UCSC:uc009clo.2
EMBL:
AC158652
GO:
GO:0005515
GO:
GO:0005783
GO:
GO:0005886
GO:
GO:0016021
GO:
GO:0030517
GO:
GO:0031290
GO:
GO:0045202
GO:
GO:0045211
MGI_trans_name:
Sema4f-201
goslim_goa:
GO:0000902
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005783
goslim_goa:
GO:0005886
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
UniParc:
UPI0000F223BC
definition
note
: transcript_id=ENSMUST00000113982
protein_id
: ENSMUSP00000109615
translation
: MLARAERPRPGPRPPPVSLFPPPSSLLLLLLAMLSAPVCGRVPRSVPRTSLPISEADSYLTRFAAPHTYNYSALLVDPASHTLYVGARDSIFALTLPFSGEKPRRIDWMVPETHRQNCRKKGKKEDECHNFIQILAIANASHLLTCGTFAFDPKCGVIDVSSFQQVERLESGRGKCPFEPAQRSAAVMAGGVLYTATVKNFLGTEPIISRAVGRAEDWIRTETLSSWLNAPAFVAAMVLSPAEWGDEDGDDEIFFFFTETSRVLDSYERIKVPRVARVCAGDLGGRKTLQQRWTTFLKADLLCPGPEHGRASGVLQDMTELRPQPGAGTPLFYGIFSSQWEGAAISAVCAFRPQDIRAVLNGPFRELKHDCNRGLPVMDNEVPQPRPGECITNNMKFQQFGSSLSLPDRVLTFIRDHPLMDRPVFPADGRPLLVTTDTAYLRVVAHRVTSLSGKEYDVLYLGTEDGHLHRAVRIGAQLSVLEDLALFPETQPVESMKLYHDWLLVGSHTEVTQVNTSNCGRLQSCSECILAQDPVCAWSFRLDACVAHAGEHRG
name
Sema4f (ENSMUSG00000000627)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000141987
Vega_transcript:
Sema4f-004
MGI_trans_name:
Sema4f-004
Vega_translation:
197896
Vega_translation:
OTTMUSP00000074126
OTTP:
OTTMUSP00000074126
OTTT:
OTTMUST00000141987
definition
note
: transcript_id=ENSMUST00000203271
protein_id
: ENSMUSP00000144745
translation
: LLLLLAMLSAPVCGRVPRSVPRTSLPISG
name
type
misc_feature
link
xref
definition
note
: contig AC158652.5 50204..217046(1)
name
Sema4f (ENSMUSG00000000627)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000050183
Vega_transcript:
OTTMUST00000050183
MGI_trans_name:
Sema4f-002
OTTT:
OTTMUST00000050183
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000203911
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.