BAC Information

Click to search

BAC

Clone NameB6Ng01-001P01
Chromosome1 (Build37)
Map Location 27,991,146 - 28,089,439
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC677427, LOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001P01.bB6Ng01-001P01.g
ACCDH840114DH840115
length1,188249
definitionDH840114|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P01, 5' end.DH840115|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,991,146 - 27,992,354)(28,089,191 - 28,089,439)
sequence
gaattcttttttattattagatattttctttatttacattttaaatttta
ttccatttcctcatttcctgtctgaatccacccatcacacctcctcccac
tcctcaccaacccaccaatcctgcttccctgttctggcattctcctacac
tttggcatcgagccttcacaagaccatgggtctctcctctcaccgatgtt
ccacaagcacatcctctattacatttgcagttggagccttgagtccctcc
atgtgtactctttggttggtggttaagtcccttggagctcttggggtact
ggttggttcatattgttgttcctcgtatggggctgcaatctccttcagct
ccatgggtactttctctatttccttcattggggatcctgtgctcagtcta
atggagggctgtgggcatccacttctttatttgtcaggcactagcagcat
ctctcaggagacagctatatcaggctcctggaagacacagtttctataga
atcatctagatgtttaaatattatatcattttacttttaccttgtattgt
cttaatactaatatgttagatatctttaaagtaactgtgattcagtaatt
ttagatggagaaacagtttgccaaaggccttttctgatattttaaacttt
gtcacaggtcttacatatatttgtgatttttgtagtattcatggtcatat
gctttttggttcaggttcaggtatgtgctatgcattaaaagtcctgaagt
tgatataggagatcattctagatctacagggtttctgattcaaaatatac
ttggtgatatgcttagtctctccagccattctcagagaatttcccttcac
aagattgaggcataaatgtgcagacatatgtaacctgcatttactttggt
tctgggcatcaaaattcctgttctcatattatagggcagatgtttaaaca
atgaacagttcttttaactattctttgcataccatatgacaggaaaatca
cattttgactgatttattattaaaaattttgactgagccagatgagtgat
gagagattgaaaataaatgattgacaatatgagctaattaaataattgat
gaattatattatggcatggattgagggagtaccgctatttgggaactatc
taccagagtggattaaggtcaaagtctattggtcaaac
cagggccatgaagtgggtgtgggcgggttggtgagcagggggagggaaga
ggggatagggacctttcataggggaaatcaggaaaggggacaacatttga
aatgtatgtaaagtaagtacctaattaaaaataaagttattagtaggccc
aaaaagagctggaaagtgtcaaactgtggtccatatctgccaaagcttaa
gcagaaaacagtggccttagaaaggatagtcaatttagctagctgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_27991146_27992354
seq2: B6Ng01-001P01.b_45_1232

seq1  GAATTCTTTTTTATTATTAGATATTTTCTTTATTTACATTTTAAATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTATTATTAGATATTTTCTTTATTTACATTTTAAATTTTA  50

seq1  TTCCATTTCCTCATTTCCTGTCTGAATCCACCCATCACACCTCCTCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTCCTCATTTCCTGTCTGAATCCACCCATCACACCTCCTCCCAC  100

seq1  TCCTCACCAACCCACCAATCCTGCTTCCCTGTTCTGGCATTCTCCTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCAACCCACCAATCCTGCTTCCCTGTTCTGGCATTCTCCTACAC  150

seq1  TTTGGCATCGAGCCTTCACAAGACCATGGGTCTCTCCTCTCACCGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATCGAGCCTTCACAAGACCATGGGTCTCTCCTCTCACCGATGTT  200

seq1  CCACAAGCACATCCTCTATTACATTTGCAGTTGGAGCCTTGAGTCCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGCACATCCTCTATTACATTTGCAGTTGGAGCCTTGAGTCCCTCC  250

seq1  ATGTGTACTCTTTGGTTGGTGGTTAAGTCCCTTGGAGCTCTTGGGGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACTCTTTGGTTGGTGGTTAAGTCCCTTGGAGCTCTTGGGGTACT  300

seq1  GGTTGGTTCATATTGTTGTTCCTCGTATGGGGCTGCAATCTCCTTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTCATATTGTTGTTCCTCGTATGGGGCTGCAATCTCCTTCAGCT  350

seq1  CCATGGGTACTTTCTCTATTTCCTTCATTGGGGATCCTGTGCTCAGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTACTTTCTCTATTTCCTTCATTGGGGATCCTGTGCTCAGTCTA  400

seq1  ATGGAGGGCTGTGGGCATCCACTTCTTTATTTGTCAGGCACTAGCAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGCTGTGGGCATCCACTTCTTTATTTGTCAGGCACTAGCAGCAT  450

seq1  CTCTCAGGAGACAGCTATATCAGGCTCCTGGAAGACACAGTTTCTATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGAGACAGCTATATCAGGCTCCTGGAAGACACAGTTTCTATAGA  500

seq1  ATCATCTAGATGTTTAAATATTATATCATTTTACTTTTACCTTGTATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTAGATGTTTAAATATTATATCATTTTACTTTTACCTTGTATTGT  550

seq1  CTTAATACTAATATGTTAGATATCTTTAAAGTAACTGTGATTCAGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACTAATATGTTAGATATCTTTAAAGTAACTGTGATTCAGTAATT  600

seq1  TTAGATGGAGAAACAGTTTGCCAAAGGCCTTTTCTGATATTTTAAACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGGAGAAACAGTTTGCCAAAGGCCTTTTCTGATATTTTAAACTTT  650

seq1  GTCACAGGTCTTACATATATTTGTGATTTTTGTAGTATTCATGGTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGTCTTACATATATTTGTGATTTTTGTAGTATTCATGGTCATAT  700

seq1  GCTTTTTGGTTCAGGTTCAGGTATGTGCTATGCATTAAAAGTCCTGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTGGTTCAGGTTCAGGTATGTGCTATGCATTAAAAGTCCTGAAGT  750

seq1  TGATATAGGAGATCATTCTAGATCTACAGGGTTTCTGATTCAAAATATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGGAGATCATTCTAGATCTACAGGGTTTCTGATTCAAAATATAC  800

seq1  TTGGTGATATGCTTAGTCTCTCCAGCCATTCTCAGAGAATTTCCCTTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATATGCTTAGTCTCTCCAGCCATTCTCAGAGAATTTCCCTTCAC  850

seq1  AAGATTGAGGCATAAATGTGCAGACATATGTAACCTGCATTTACTTTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAGGCATAAATGTGCAGACATATGTAACCTGCATTTACTTTGGT  900

seq1  TCTGGGCATCAAAATTCCTGTTCTCATATTTATAGGGCAGATGTTTAAAC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTGGGCATCAAAATTCCTGTTCTCATA-TTATAGGGCAGATGTTTAAAC  949

seq1  AATGAACAGTTCTTTTAAACTATTCTTTGCATACCATATGAACAGGAAAA  1000
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AATGAACAGTTCTTTT-AACTATTCTTTGCATACCATATG-ACAGGAAAA  997

seq1  TCAACATTTTGAACTGAATTTATTATTAAAAAATTTTGACTGAGCCAGAA  1050
      || |||||||| |||| |||||||||| |||||||||||||||||||| |
seq2  TC-ACATTTTG-ACTG-ATTTATTATT-AAAAATTTTGACTGAGCCAG-A  1042

seq1  TGAGTGAATGAGAGAATGAAAATAAATGAATGAACAAATATGAAGCTAAA  1100
      |||||| |||||||| ||||||||||||| |||   |||||| |||||| 
seq2  TGAGTG-ATGAGAGATTGAAAATAAATGATTGA--CAATATG-AGCTAAT  1088

seq1  TAAATAAATGATTGAATAAATAATTAAATGGCATGAAATGA-GGAGTTAC  1149
      ||||||| ||| ||||| |   |||  |||||||| | ||| |||||  |
seq2  TAAATAATTGA-TGAATTA--TATT--ATGGCATGGATTGAGGGAGTACC  1133

seq1  GCTATTTGGGAAAACTTATCAACCAGAGT-GAGTAAGGTGAAAAGAGTCT  1198
      ||||||||||||    |||| |||||||| || |||||| ||   |||||
seq2  GCTATTTGGGAA---CTATCTACCAGAGTGGATTAAGGTCAA---AGTCT  1177

seq1  ATTGGGCAAAC  1209
      ||||| |||||
seq2  ATTGGTCAAAC  1188

seq1: chr1_28089191_28089439
seq2: B6Ng01-001P01.g_75_323 (reverse)

seq1  CAAACTGCTAGCTAAATTGTCTATCCTTTCTAAGGCCACTGTTTTCTGCT  50
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAAACAGCTAGCTAAATTGACTATCCTTTCTAAGGCCACTGTTTTCTGCT  50

seq1  TAAGCTTTGGCAGATATGGACCACAGTTTGACACTTTCCAGCTCTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTGGCAGATATGGACCACAGTTTGACACTTTCCAGCTCTTTTTG  100

seq1  GGCCTACTAATAACTTTATTTTTAATTAGGTACTTACTTTACATACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACTAATAACTTTATTTTTAATTAGGTACTTACTTTACATACATTT  150

seq1  CAAATGTTGTCCCCTTTCCTGATTTCCCCTATGAAAGGTCCCTATCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTGTCCCCTTTCCTGATTTCCCCTATGAAAGGTCCCTATCCCCT  200

seq1  CTTCCCTCCCCCTGCTCACCAACCCGCCCACACCCACTTCATGGCCCTG  249
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCCCCTGCTCACCAACCCGCCCACACCCACTTCATGGCCCTG  249