BAC Information

Click to search

BAC

Clone NameB6Ng01-002B24
Chromosome1 (Build37)
Map Location 95,390,344 - 95,391,426
singlet/doubletsinglet
Overlap geneSept2
Upstream geneOlfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp
Downstream geneFarp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002B24.bB6Ng01-002B24.g
ACCDH840245DH840246
length1,2251,087
definitionDH840245|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B24, 5' end.DH840246|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggacagccagggctatacagagaaaccctgtctcgaaaaata
aaagacaaaaaacaaaaaacaaacaaacaaaaaaaagtaaaggcacaaga
accagaaacccactttttcatacacttaggagtctcataaaaataccaag
ctgaaagctataatacacacacaggccctgctgcagacccgtatgtgttc
cgtgctcgctgttccagcctctctgagctcctatgaactttcttcagttg
attgacagggactttctcctctgagctctggtctgtctcccatcatccag
catcccctctttgagttctttctttagctaagtcttccttcttttaattt
ttcttaaagaggatataaaaaaattataatcatttttagacatagttatc
agtatgctgatactcctagcaaaattacatggggtccaaatgtcctcttc
taaatttttttctatttttttattatggaaaatattttattttctaattt
ctaactctctcctttctctggagactttattttaccacattcaaacttaa
tatcttttctcccctctctttccttctctctctggtctctttcagacccc
gtgactgggatcggaagttcccccttctctttctcctctgagcagttatt
ggctgaatcagctctttagaaaccgttttagggttttactgctgtgaaca
gacaccatgaccaaggcaactcttataagaacaacatttaattggggttg
ccttacaggttcagaggttcagtccattatcatcaaggcaggaacatggc
agcatccaggcaggcgtggtgcaggagaaactgagagttctacatcttca
tctgaagtctgctagctgaatactggcttctaggtagctagggtgagggt
cctaggcccactcccacagtgacacacctactctaacagggccacacttc
taatagtaccactccctgggccaagcatatacaaatcacacagaaatcat
ttcaggtgatgggaacatctttatacatcactgagacaggagatattcca
ttatcatgacatgacatgactatgtggatgtggcatccttggactggtgc
tcagtttctatggaaaagcaggctgcacagcattaaaacagcagtaagca
gatactcatggcttgactcagattgctcagattcctgtgccatgtgttgt
agttccgtgctcgtgaaattctctg
gaattccagccattcaaagaaaactcattaaacactcagggcacttagta
gggtctacagggctaaagtagacataaaatgttgttatttatccctaaaa
agttatgaacaaggggctggagagatggctcagtggttaagagcactgac
tgttgttccaaaggtcctgagttcaaatcccagcaaccacatggtggctc
acaaccatccgtaattagatctgacttccttttctgaagtgtctgaagac
agctacagtgtacttatatataataaataagtcttttaaaaaaaaaagtt
atgaacaagccttggagaatcaaactgcttaaatacttactaagtcagaa
atatcccttattaaagacatcaaaaagtgtgatcctgcatgtctgtaaac
cagtgcttggaagcttgtagaagagggatggatctaaggtggagacaagc
ctgggctacataatgagaccttgacagaggaggagaaagagaaatttgac
catttacagtgtagtcaaactatccagtatactgttaaaacaaaaataaa
aacagaattttggattttttttttttaactgagaccccaaaagcaaaatt
atacagttgggatgttttgaacaaagactgtcctccatggggtacatgta
ggctagtttgcaaattgtacttgcaaattaacttgaaatatatcctacac
ctaaagtaaaaaaaaatttttttagaagaaagtaaacataattttatgac
agctaaaaacatttcaaaggacatgaacggttaccgcaataggaaaaaaa
aacacttcattaactattctttatggtggttgggagggatggcccaggta
ttatgagaacttgctgttcttacacaggacctgacttcagttcccagcat
ttttgtcaggtagctccttgactgccttgattccagctcctctggagcca
actcctctggtctctcaggcacttgtactcacttgtctagccgtcagccc
caaccacaacgcattcataatttaattgtaaatctggttgttttttttaa
aataaaaacaattaccctggaagctgaagaaatggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95390344_95391426
seq2: B6Ng01-002B24.g_66_1152

seq1  GAATTCCAGCCATTCAAAGAAAACTCATTAAACACTCAGGGCACTTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCATTCAAAGAAAACTCATTAAACACTCAGGGCACTTAGTA  50

seq1  GGGTCTACAGGGCTAAAGTAGACATAAAATGTTGTTATTTATCCCTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTACAGGGCTAAAGTAGACATAAAATGTTGTTATTTATCCCTAAAA  100

seq1  AGTTATGAACAAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAACAAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGAC  150

seq1  TGTTGTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTC  200

seq1  ACAACCATCCGTAATTAGATCTGACTTCCTTTTCTGAAGTGTCTGAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCCGTAATTAGATCTGACTTCCTTTTCTGAAGTGTCTGAAGAC  250

seq1  AGCTACAGTGTACTTATATATAATAAATAAGTCTTTTAAAAAAAAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGTGTACTTATATATAATAAATAAGTCTTTTAAAAAAAAAAGTT  300

seq1  ATGAACAAGCCTTGGAGAATCAAACTGCTTAAATACTTACTAAGTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAGCCTTGGAGAATCAAACTGCTTAAATACTTACTAAGTCAGAA  350

seq1  ATATCCCTTATTAAAGACATCAAAAAGTGTGATCCTGCATGTCTGTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCTTATTAAAGACATCAAAAAGTGTGATCCTGCATGTCTGTAAAC  400

seq1  CAGTGCTTGGAAGCTTGTAGAAGAGGGATGGATCTAAGGTGGAGACAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTGGAAGCTTGTAGAAGAGGGATGGATCTAAGGTGGAGACAAGC  450

seq1  CTGGGCTACATAATGAGACCTTGACAGAGGAGGAGAAAGAGAAATTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTACATAATGAGACCTTGACAGAGGAGGAGAAAGAGAAATTTGAC  500

seq1  CATTTACAGTGTAGTCAAACTATCCAGTATACTGTTAAAACAAAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAGTGTAGTCAAACTATCCAGTATACTGTTAAAACAAAAATAAA  550

seq1  AACAGAATTTTGGATTTTTTTTTTTTAACTGAGACCCCAAAAGCAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATTTTGGATTTTTTTTTTTTAACTGAGACCCCAAAAGCAAAATT  600

seq1  ATACAGTTGGGATGTTTTGAACAAAGACTGTCCTCCATGGGGTACATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTGGGATGTTTTGAACAAAGACTGTCCTCCATGGGGTACATGTA  650

seq1  GGCTAGTTTGCAAATTGTACTTGCAAATTAACTTGAAATATATCCTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTTTGCAAATTGTACTTGCAAATTAACTTGAAATATATCCTACAC  700

seq1  CTAAAGTAAAAAAAAATTTTTTTAGAAGAAAGTAAACATAATTTTATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTAAAAAAAAATTTTTTTAGAAGAAAGTAAACATAATTTTATGAC  750

seq1  AGCTAAAAACATTTCAAAGGACATGAACGGTTACCGCAATAGGAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAAACATTTCAAAGGACATGAACGGTTACCGCAATAGGAAAAAAA  800

seq1  AACACTTCATTAACTATTCTTTATGGTGGTT-GGAGGGATGGCCCAGGTA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACACTTCATTAACTATTCTTTATGGTGGTTGGGAGGGATGGCCCAGGTA  850

seq1  TTATGAGAACTTGCTGTTCTTACACAGGACCTGACTTCAGTTCCCAGCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGAACTTGCTGTTCTTACACAGGACCTGACTTCAGTTCCCAGCAT  900

seq1  TTTTGTCAGGTAGCTCC-TGACTGCCTTGAATTCCAGCTCCTCTGGAGCC  948
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TTTTGTCAGGTAGCTCCTTGACTGCCTTG-ATTCCAGCTCCTCTGGAGCC  949

seq1  AACTCCTCTGGTCTCCTCAGGCACTTGTACTCACTTGTCTAGCCGTCAGC  998
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACTCCTCTGGTCT-CTCAGGCACTTGTACTCACTTGTCTAGCCGTCAGC  998

seq1  CCCAACCAC-ACGCATTCATAATTTAA-TGTAAATCTGTTTG-TTTTTTT  1045
      ||||||||| ||||||||||||||||| |||||||||| ||| |||||||
seq2  CCCAACCACAACGCATTCATAATTTAATTGTAAATCTGGTTGTTTTTTTT  1048

seq1  AAATAAAAAACAATTA-CCTTGAAGCTGAAGAAATGGCT  1083
      |||  ||||||||||| ||| ||||||||||||||||||
seq2  AAAATAAAAACAATTACCCTGGAAGCTGAAGAAATGGCT  1087