BAC Information

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BAC

Clone NameB6Ng01-002F07
Chromosome1 (Build37)
Map Location 82,441,702 - 82,561,916
singlet/doubletdoublet
Overlap geneRhbdd1, Col4a4
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002F07.bB6Ng01-002F07.g
ACCDH840390DH840391
length1,065261
definitionDH840390|Mus musculus domesticus DNA, BAC clone: B6Ng01-002F07, 5' end.DH840391|Mus musculus domesticus DNA, BAC clone: B6Ng01-002F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,441,702 - 82,442,786)(82,561,656 - 82,561,916)
sequence
gaattctgctagcttgtacatgtagctttaatgtagtaacagtacctggt
tgctttgtttgacttgatggtcaaagacactgaaaatcccaattttggat
ggtgtagttataaaatgcactttttctttatttatggagtgggatgtcac
caaatgtttattacagatgtgggaaaagtcattttagggataagtgaaaa
ccacatgtcttccagaataaagatggtctggaaatgataatcagtgtgtt
gctcgagtcatgggcttgcctatagccagtgcttagtgttttctgggtct
ggaattctttttttgtttgtttgtttgctatcacatttttgttttgtgtt
tgccccatccaccataaggaatgctcaaagttatgtcaacaaactggaag
tgctctgaaaaagagtagcagaagcgaattgcttccaacagggagtaagc
accaagagctgatttttagacttggttctttaccagcaatcttccaactg
tcctttatttccagttcccccagtttggtgcggtcagtcagcctcacaga
tctcttcattcagcacctccctggctctcaagaggaaggaccaggtaaaa
ctgcgtcctcttgacgactttccaggcgttgcctgtgatttgcaaagttg
ttcatgagaatgtctgctgctgaggctggaaggaagccgtaaatgactag
gcttagtagtatctgaccaggggagttggctgtggagtgacagaggtgac
cccagcacatagtcgacctctcttaggagtcggtgttcaggaaccccctg
caccccattactcgtaagtatatcgttctatttctttctcgttggtttac
tgtcagaatttttggatcttattctcactgctccaactttttttttttgt
cagtattttaagaatcataaactctaagctggaaggaccttgatgtcttt
cgatcatgcttgtcatactaaaatacctctcatcactccaccactgttgc
agtggcttcagacccatttcagaaatacactcatcatccgaatctttatt
gttgtgtgttgacaa
ttggactacacttggtattgaagtggctgatggctctggctatggagatg
tgatagatgacaaggtgctttgtcccacaaagggcaggaactttcttgtg
tgagaggtgtgcatgaatacatacagcgtcttatgcatacagtatgtgca
tgtgtgtatctctgtgtgtgtgtgtctgtatgtatatctctttgtgtttg
tgtgtgtatggttgtctgtgtttatatctgtgtgtgtgtatgtatgtatg
tatgtatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82441702_82442786
seq2: B6Ng01-002F07.b_47_1111

seq1  GAATTCTGCTAGCTTGTACATGTAGCTTTAATGTAGTAACAGTACCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTAGCTTGTACATGTAGCTTTAATGTAGTAACAGTACCTGGT  50

seq1  TGCTTTGTTTGACTTGATGGTCAAAGACACTGAAAATCCCAATTTTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTTTGACTTGATGGTCAAAGACACTGAAAATCCCAATTTTGGAT  100

seq1  GGTGTAGTTATAAAATGCACTTTTTCTTTATTTATGGAGTGGGATGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGTTATAAAATGCACTTTTTCTTTATTTATGGAGTGGGATGTCAC  150

seq1  CAAATGTTTATTACAGATGTGGGAAAAGTCATTTTAGGGATAAGTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTATTACAGATGTGGGAAAAGTCATTTTAGGGATAAGTGAAAA  200

seq1  CCACATGTCTTCCAGAATAAAGATGGTCTGGAAATGATAATCAGTGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGTCTTCCAGAATAAAGATGGTCTGGAAATGATAATCAGTGTGTT  250

seq1  GCTCGAGTCATGGGCTTGCCTATAGCCAGTGCTTAGTGTTTTCTGGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGTCATGGGCTTGCCTATAGCCAGTGCTTAGTGTTTTCTGGGTCT  300

seq1  GGAATTCTTTTTTTGTTTGTTTGTTTGCTATCACATTTTTGTTTTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTTTTTTTGTTTGTTTGTTTGCTATCACATTTTTGTTTTGTGTT  350

seq1  TGCCCCATCCACCATAAGGAATGCTCAAAGTTATGTCAACAAACTGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCATCCACCATAAGGAATGCTCAAAGTTATGTCAACAAACTGGAAG  400

seq1  TGCTCTGAAAAAGAGTAGCAGAAGCGAATTGCTTCCAACAGGGAGTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGAAAAAGAGTAGCAGAAGCGAATTGCTTCCAACAGGGAGTAAGC  450

seq1  ACCAAGAGCTGATTTTTAGACTTGGTTCTTTACCAGCAATCTTCCAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGCTGATTTTTAGACTTGGTTCTTTACCAGCAATCTTCCAACTG  500

seq1  TCCTTTATTTCCAGTTCCCCCAGTTTGGTGCGGTCAGTCAGCCTCACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATTTCCAGTTCCCCCAGTTTGGTGCGGTCAGTCAGCCTCACAGA  550

seq1  TCTCTTCATTCAGCACCTCCCTGGCTCTCAAGAGGAAGGACCAGGTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCATTCAGCACCTCCCTGGCTCTCAAGAGGAAGGACCAGGTAAAA  600

seq1  CTGCGTCCTCTTGACGACTTTCCAGGCGTTGCCTGTGATTTGCAAAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTCCTCTTGACGACTTTCCAGGCGTTGCCTGTGATTTGCAAAGTTG  650

seq1  TTCATGAGAATGTCTGCTGCTGAGGCTGGAAGGAAGCCGTAAATGACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGAATGTCTGCTGCTGAGGCTGGAAGGAAGCCGTAAATGACTAG  700

seq1  GCTTAGTAGTATCTGACCAGGGGAGTTGGCTGTGGAGTGACAGAGGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTAGTATCTGACCAGGGGAGTTGGCTGTGGAGTGACAGAGGTGAC  750

seq1  CCCAGCACATAGTCGACCTCTCTTAGGAGTCGGTGTTCAGGAAAGAAATG  800
      |||||||||||||||||||||||||||||||||||||||||||     ||
seq2  CCCAGCACATAGTCGACCTCTCTTAGGAGTCGGTGTTCAGGAACCCCCTG  800

seq1  CA-TCAATTACTCGTAAGTATATCGTTCTA-TTCCTTCCCG-TGGGTCAC  847
      ||  | |||||||||||||||||||||||| ||| ||| || ||| | ||
seq2  CACCCCATTACTCGTAAGTATATCGTTCTATTTCTTTCTCGTTGGTTTAC  850

seq1  TG-CAGAAATTTTCGAACCTAATTCTCACTGCCCCAACTTTTTTTTTTTT  896
      || ||| |||||| | | || ||||||||||| |||||  ||||||||||
seq2  TGTCAG-AATTTTTGGATCTTATTCTCACTGCTCCAAC--TTTTTTTTTT  897

seq1  TGTCAGTATTTT-AGAATCATAAACTCTAAGCTTGGAAGGACCTTGAAGT  945
      |||||||||||| ||||||||||||||||||| |||||||||||||| ||
seq2  TGTCAGTATTTTAAGAATCATAAACTCTAAGC-TGGAAGGACCTTGATGT  946

seq1  CTTTCGATTCATTGCTTTGTTCAATACTTAAAATACCTCTTCATTCAACT  995
      ||||||| ||| ||| ||||   |||| ||||||||||| ||||   |||
seq2  CTTTCGA-TCA-TGC-TTGT--CATAC-TAAAATACCTC-TCAT--CACT  987

seq1  CCAACCACTGTTGCCAGTTGGGCTTCCAGAACCCATTTTAGAAATACCAC  1045
      || |||||||||| ||||  ||||| ||| |||||||| ||||||| |||
seq2  CC-ACCACTGTTG-CAGT--GGCTT-CAG-ACCCATTTCAGAAATA-CAC  1030

seq1  TCATCATCCCGGATATCTTTTATTGTTTGTGTGTTGACAA  1085
      |||||||||  || ||| ||||||| ||||||||||||||
seq2  TCATCATCC--GA-ATC-TTTATTG-TTGTGTGTTGACAA  1065

seq1: chr1_82561656_82561916
seq2: B6Ng01-002F07.g_73_333 (reverse)

seq1  ATACATACATACATACATACATACACACACACAGATATAAACACAGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATACATACATACATACACACACACAGATATAAACACAGACAA  50

seq1  CCATACACACACAAACACAAAGAGATATACATACAGACACACACACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACACACAAACACAAAGAGATATACATACAGACACACACACACAG  100

seq1  AGATACACACATGCACATACTGTATGCATAAGACGCTGTATGTATTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACACATGCACATACTGTATGCATAAGACGCTGTATGTATTCATG  150

seq1  CACACCTCTCACACAAGAAAGTTCCTGCCCTTTGTGGGACAAAGCACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCTCACACAAGAAAGTTCCTGCCCTTTGTGGGACAAAGCACCTT  200

seq1  GTCATCTATCACATCTCCATAGCCAGAGCCATCAGCCACTTCAATACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTATCACATCTCCATAGCCAGAGCCATCAGCCACTTCAATACCAA  250

seq1  GTGTAGTCCAA  261
      |||||||||||
seq2  GTGTAGTCCAA  261