BAC Information

Click to search

BAC

Clone NameB6Ng01-003E20
Chromosome1 (Build37)
Map Location 144,133,809 - 144,320,077
singlet/doubletdoublet
Overlap genenone
Upstream geneEG226472, LOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003E20.bB6Ng01-003E20.g
ACCDH841060DH841061
length1,1061,101
definitionDH841060|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E20, 5' end.DH841061|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,133,809 - 144,134,919)(144,318,959 - 144,320,077)
sequence
gaattcttctgatttatcattcacaattgacctgctaacaaatgcaatat
tgaggagaaataagcacactatcatgttttctaatcttttcaatggacag
catactggctctggcttattatttatcatgcctctattgtatttgtatat
atacttgagttgggttaagaaagtgtctctgctataattcagaagttata
tatagctattgaatcagggaggtataggtatgctcgtctcttgaatagac
gttttgatttcttagatttttatcaccacctgtatagcttgtgttcattt
ctcatggtgattctgtcagattgaatatagcttgcatttctccaacatcc
aatccagcttgtggctatttgttactacatttttgtagttactttcagtt
cttgtcttgtagtttttgctctgtcacacaaaaagaaaatgtgttagctc
agtgaatagtgcattgaaatgggcaaaatctaatctggttatttcttgtg
atttccaaatatcactattactggcaaaaaaaaagtataaaatataagcc
aacagaccaatttttcactgtgacagtggtctcttttatttcttgttcat
gaccacctcctggttttgtttaattttggcctttttctgttaattccata
tcctttagttgagaatatttattatcttttctcatatattctttgtataa
ctggaatattattttccttttcacagggagaaacaaggagtagcacaata
agcaaatggaatatgcctgtccttatgccaatcctacaaattcaaaatgt
atgattacatcttctctttctattatgccaatgtcataagattcctttag
catccagatgatggcattctaacaagaagtcataaagcctcaatataaac
aggcttcaggactctctaggtcaattagatatgagaaattgttggttact
tgagctggagagagtgttccttcagttagagcactgcttgttctttccac
tgacccagatcatttctacacccatattctaaattaccatcaatggatgt
ctatctttggccatcctaggtaccaggccccacacataatccaaaatatt
ttatgc
gaattccaaacatgtcctgacagaagaatgtagattttaatagacagatg
tagatagaggtagaatgtagtgactgaatatagtaacagtgataattgga
tatagttttttatagagataattcattatcacaaattatgatgatttttt
tctaatcagagaatatataaattattcacaatatataccacatcacacac
agaggcctctgtctagttatcatctctctagtaaaattgaaaggtctcaa
agtcaccgttatggtttttttgtaaatcaaatctaaattagacaccttgt
cagcccagatggcattaaataaataaccaaatatgtagatttctgatgat
tattaccattgttctgttatactttataatcataaggcctcttttgtcat
tgtgatattgcacactggagctaatagagcagagacatgagattatatca
agacagggctaattgtgctaaacagaaaatgagaagaggaaaaaaaattg
tgtacagatatgtatccccctttcaaagtcaccaggggttttgggggaat
tctgagtacaaaacagtagcctaagagaagccaatgttctttgtaccttt
tgccagcaacattgccccaaatactttaccatctgctcaccacatgaaag
taaactacaaatagcattttttttctgtttgagtcagttcctcaagacaa
tattcaccttgcttctttcaagcacttagctttgattcgatttttgcagc
tctggcttcttgactctgatgaccttgaactgaaagctttttaggtcttt
cccagttgaatgttaggaagaatagcttcataatatagagatgatttttc
tttaaagttgtcctatctgttccttgtgataaacattttttttctggcac
tttagtatcagcaaagcatcatctgtagataatgacagcatttctgtgac
tacaaatttgtagtaacaccacatttcacagacatttggtaaagatttca
tcagtgacaaggctgtaattttctctaagtaaaggattacaaatgagaat
caggttatatgacttatgataaccaaagatgacaacattgtttctgttat
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144133809_144134919
seq2: B6Ng01-003E20.b_45_1150

seq1  GAATTCTTCTGATTTATCATTCACAATTGACCTGCTAACAAATGCAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGATTTATCATTCACAATTGACCTGCTAACAAATGCAATAT  50

seq1  TGAGGAGAAATAAGCACACTATCATGTTTTCTAATCTTTTCAATGGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAAATAAGCACACTATCATGTTTTCTAATCTTTTCAATGGACAG  100

seq1  CATACTGGCTCTGGCTTATTATTTATCATGCCTCTATTGTATTTGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGCTCTGGCTTATTATTTATCATGCCTCTATTGTATTTGTATAT  150

seq1  ATACTTGAGTTGGGTTAAGAAAGTGTCTCTGCTATAATTCAGAAGTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGAGTTGGGTTAAGAAAGTGTCTCTGCTATAATTCAGAAGTTATA  200

seq1  TATAGCTATTGAATCAGGGAGGTATAGGTATGCTCGTCTCTTGAATAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTATTGAATCAGGGAGGTATAGGTATGCTCGTCTCTTGAATAGAC  250

seq1  GTTTTGATTTCTTAGATTTTTATCACCACCTGTATAGCTTGTGTTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATTTCTTAGATTTTTATCACCACCTGTATAGCTTGTGTTCATTT  300

seq1  CTCATGGTGATTCTGTCAGATTGAATATAGCTTGCATTTCTCCAACATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTGATTCTGTCAGATTGAATATAGCTTGCATTTCTCCAACATCC  350

seq1  AATCCAGCTTGTGGCTATTTGTTACTACATTTTTGTAGTTACTTTCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCTTGTGGCTATTTGTTACTACATTTTTGTAGTTACTTTCAGTT  400

seq1  CTTGTCTTGTAGTTTTTGCTCTGTCACACAAAAAGAAAATGTGTTAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTGTAGTTTTTGCTCTGTCACACAAAAAGAAAATGTGTTAGCTC  450

seq1  AGTGAATAGTGCATTGAAATGGGCAAAATCTAATCTGGTTATTTCTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATAGTGCATTGAAATGGGCAAAATCTAATCTGGTTATTTCTTGTG  500

seq1  ATTTCCAAATATCACTATTACTGGCAAAAAAAAAGTATAAAATATAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAATATCACTATTACTGGCAAAAAAAAAGTATAAAATATAAGCC  550

seq1  AACAGACCAATTTTTCACTGTGACAGTGGTCTCTTTTATTTCTTGTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCAATTTTTCACTGTGACAGTGGTCTCTTTTATTTCTTGTTCAT  600

seq1  GACCACCTCCTGGTTTTGTTTAATTTTGGCCTTTTTCTGTTAATTCCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCTCCTGGTTTTGTTTAATTTTGGCCTTTTTCTGTTAATTCCATA  650

seq1  TCCTTTAGTTGAGAATATTTATTATCTTTTCTCATATATTCTTTGTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGTTGAGAATATTTATTATCTTTTCTCATATATTCTTTGTATAA  700

seq1  CTGGAATATTATTTTCCTTTTCACAGGGAGAAACAAGGAGTAGCACAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATATTATTTTCCTTTTCACAGGGAGAAACAAGGAGTAGCACAATA  750

seq1  AGCAAATGGAATATGCCTGTCCTTATGCCAATCCTACAAATTCAAAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGGAATATGCCTGTCCTTATGCCAATCCTACAAATTCAAAATGT  800

seq1  ATGATTACATCTTCTCTTTCTATTATGCCAATGTCATAAGATTCCTTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTACATCTTCTCTTTCTATTATGCCAATGTCATAAGATTCCTTTAG  850

seq1  CATCCAGATGATGGCATTCTAACAAGAAGTCATAAAGCCTCAATATTAAC  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATCCAGATGATGGCATTCTAACAAGAAGTCATAAAGCCTCAATATAAAC  900

seq1  AGGCTTCAGGACTCTCTAGGTCAATTAGATATGAGAAAATGTTGGTTACT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGCTTCAGGACTCTCTAGGTCAATTAGATATGAGAAATTGTTGGTTACT  950

seq1  TGAGGCTGGAGAGAGTGTTCC-TCAGTTAAGAGCACTGGCTGTTC-TTCC  998
      ||| ||||||||||||||||| |||||| |||||||||  ||||| ||||
seq2  TGA-GCTGGAGAGAGTGTTCCTTCAGTT-AGAGCACTGCTTGTTCTTTCC  998

seq1  ACTGGACCCCAGATCAATTTCTACCACCCATATCTTATATTACAATCAAA  1048
      ||||   |||||||| ||||||| |||||||||  || ||||| ||| ||
seq2  ACTG--ACCCAGATC-ATTTCTA-CACCCATATTCTAAATTACCATC-AA  1043

seq1  TGTGATGTCTATCTTTGGCCATCATAGGTACCAGG-CACACACATAATCC  1097
      || |||||||||||||||||||| ||||||||||| | ||||||||||||
seq2  TG-GATGTCTATCTTTGGCCATCCTAGGTACCAGGCCCCACACATAATCC  1092

seq1  ATAAATA-TTTATGC  1111
      | ||||| |||||||
seq2  A-AAATATTTTATGC  1106

seq1: chr1_144318959_144320077
seq2: B6Ng01-003E20.g_66_1166 (reverse)

seq1  TATAACAAGGAACAATTGTTTTGTCATCTTTTGGTTATCATTAAGTACAT  50
      |||||| || |||||   | |||||||| ||||||||||| ||||    |
seq2  TATAAC-AGAAACAA---TGTTGTCATC-TTTGGTTATCA-TAAG----T  40

seq1  TATAAAACCTGGATCTCATTTGTAATCCCTATTAACTTAAGAGAAAA-TA  99
       ||| ||||||  |||||||||||||||   || |||| |||||||| ||
seq2  CATATAACCTGATTCTCATTTGTAATCC---TTTACTT-AGAGAAAATTA  86

seq1  CAGCCTTGTCACTTGATGAAAATCTATACCAAATGTTCTGTGAAATGTGG  149
      |||||||||||| ||||| |||||| ||||||||| ||||||||||||||
seq2  CAGCCTTGTCAC-TGATG-AAATCTTTACCAAATG-TCTGTGAAATGTGG  133

seq1  TGTTACTACAAATTTGTAGTCACAGAAATGCTGTCATTATCTAACAGAAT  199
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  TGTTACTACAAATTTGTAGTCACAGAAATGCTGTCATTATCT-ACAG-AT  181

seq1  GATGCTTTGCTGATACTAAAGTGCCAGAAAAAAATGTTTTATCACAAGGA  249
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  GATGCTTTGCTGATACTAAAGTGCCAGAAAAAAAATGTTTATCACAAGGA  231

seq1  ACAGATAGGACAACTTTAAAGAAAAATCATCTCTATATTATGAAGCTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGGACAACTTTAAAGAAAAATCATCTCTATATTATGAAGCTATT  281

seq1  CTTCCTAACATTCAACTGGGAAAGACCTAAAAAGCTTTCAGTTCAAGGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAACATTCAACTGGGAAAGACCTAAAAAGCTTTCAGTTCAAGGTC  331

seq1  ATCAGAGTCAAGAAGCCAGAGCTGCAAAAATCGAATCAAAGCTAAGTGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTCAAGAAGCCAGAGCTGCAAAAATCGAATCAAAGCTAAGTGCT  381

seq1  TGAAAGAAGCAAGGTGAATATTGTCTTGAGGAACTGACTCAAACAGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAGCAAGGTGAATATTGTCTTGAGGAACTGACTCAAACAGAAAA  431

seq1  AAAATGCTATTTGTAGTTTACTTTCATGTGGTGAGCAGATGGTAAAGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTATTTGTAGTTTACTTTCATGTGGTGAGCAGATGGTAAAGTAT  481

seq1  TTGGGGCAATGTTGCTGGCAAAAGGTACAAAGAACATTGGCTTCTCTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAATGTTGCTGGCAAAAGGTACAAAGAACATTGGCTTCTCTTAG  531

seq1  GCTACTGTTTTGTACTCAGAATTCCCCCAAAACCCCTGGTGACTTTGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGTTTTGTACTCAGAATTCCCCCAAAACCCCTGGTGACTTTGAAA  581

seq1  GGGGGATACATATCTGTACACAATTTTTTTTCCTCTTCTCATTTTCTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATACATATCTGTACACAATTTTTTTTCCTCTTCTCATTTTCTGTT  631

seq1  TAGCACAATTAGCCCTGTCTTGATATAATCTCATGTCTCTGCTCTATTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAATTAGCCCTGTCTTGATATAATCTCATGTCTCTGCTCTATTAG  681

seq1  CTCCAGTGTGCAATATCACAATGACAAAAGAGGCCTTATGATTATAAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGTGCAATATCACAATGACAAAAGAGGCCTTATGATTATAAAGT  731

seq1  ATAACAGAACAATGGTAATAATCATCAGAAATCTACATATTTGGTTATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAACAATGGTAATAATCATCAGAAATCTACATATTTGGTTATTT  781

seq1  ATTTAATGCCATCTGGGCTGACAAGGTGTCTAATTTAGATTTGATTTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGCCATCTGGGCTGACAAGGTGTCTAATTTAGATTTGATTTACA  831

seq1  AAAAAACCATAACGGTGACTTTGAGACCTTTCAATTTTACTAGAGAGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCATAACGGTGACTTTGAGACCTTTCAATTTTACTAGAGAGATG  881

seq1  ATAACTAGACAGAGGCCTCTGTGTGTGATGTGGTATATATTGTGAATAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGACAGAGGCCTCTGTGTGTGATGTGGTATATATTGTGAATAAT  931

seq1  TTATATATTCTCTGATTAGAAAAAAATCATCATAATTTGTGATAATGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTCTCTGATTAGAAAAAAATCATCATAATTTGTGATAATGAAT  981

seq1  TATCTCTATAAAAAACTATATCCAATTATCACTGTTACTATATTCAGTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATAAAAAACTATATCCAATTATCACTGTTACTATATTCAGTCA  1031

seq1  CTACATTCTACCTCTATCTACATCTGTCTATTAAAATCTACATTCTTCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCTACCTCTATCTACATCTGTCTATTAAAATCTACATTCTTCTG  1081

seq1  TCAGGACATGTTTGGAATTC  1119
      ||||||||||||||||||||
seq2  TCAGGACATGTTTGGAATTC  1101