BAC Information

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BAC

Clone NameB6Ng01-003P03
Chromosome1 (Build37)
Map Location 73,226,930 - 73,326,063
singlet/doubletdoublet
Overlap genenone
Upstream geneMreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
Downstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003P03.bB6Ng01-003P03.g
ACCDH841500DH841501
length1,1821,121
definitionDH841500|Mus musculus domesticus DNA, BAC clone: B6Ng01-003P03, 5' end.DH841501|Mus musculus domesticus DNA, BAC clone: B6Ng01-003P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,226,930 - 73,228,114)(73,324,922 - 73,326,063)
sequence
gaattctttgtttagctctgtgccccattttcaatggggttatttggttt
tctggactccatcttcttgagttctttatatatattggatctgttcttaa
gagctgtctcttttcctgtccacccatcttttcatttatttgggagtatt
tccttcttggctatctgtaaaaaggcatggttaatcttacttcttaagtg
gttgatgtaatagacattctacaggggaggaccaggacatgttggacagg
atcaaaggatctctgggtggacatggctcctttaaatcagtgtctctgct
gaccactttccattgagcaagcctgggctatggtcggcctctgaagcctt
ctcatccggaatcatgagcaccatcgttgctaaatgatctctgattccat
ttgtacatcccgaacctttattcttcccactaaaaccaaataacatatag
tttttcagtctatataccaatcatattagaataaatatttctttccaaat
ttatttccactcagaactttctttgaaaatgatgcctttcagatataaac
aagttaaaatgaagtcatattgagctggaagtaggctgctgtcctttgaa
aaataacttggagttagaggtacacagagaagaatgccatgggaagatgg
aggcaggagctacagttatgatcccacaagctagagtgctgagaatcact
agagctcaccagcatctaggaggaagtgggcgaaatcttcctttgcagtc
ttctcggggagcatggtcttgccaacaattgaaatttttaaatttttcat
tctaaaattgcaataaaatacacttctattctttcaaaccacctcttttc
tggggacttacttcagcaaactcaggaagccaatatagcaaccaatgact
gattcccatgaaagttctgtacaggaggaatgggtgaggcaaaatcagaa
ccagaacagtttctttttacccattttctcttgatgtgttcatattttag
tattgcactagactcagaaatatatgcacattcatgctatgggattgtca
actggctctgagtcatagcatctttagttcatgaagtctctttagacttg
acttctaattacttctagagaaagaacgtttgaacttcagcctgatgaaa
gatgtaaaatatagaccataccggacctatgt
gaattcacttataatgaacaaacaagtgtgtgaaatctgtagtgtgggaa
atggaagaaaactacctgaactgccgactgatcttggaaaacatcctgag
acctcagatggctctctgtcacctgttccctggtctgtcaggaattgttc
cggatgctttgatttactcctcacaaatatcctgcatgatgggtggcatt
gtttttataaataaacgagagggtaggaggcatgcaggagttgtcagagg
tggaacgaggtggagttggcattccagttcgcggtttttacacgtgtcag
ggcacccttctgcttgaaagctactcagaggtacaagcagacgcggtaaa
agaaaattaaaaatggcattgagtaactctcagaatataagggactgtca
accatagctaactgacactctcttcagtctttgtttgatctctatgcaat
tagacatttgagaaatactattttggactctgtttctccgggcttccctg
tattttttggaggggacaggatatgtttaaaagctggattccagacaaac
tgtctttccattcctcccctgctattagctatctattcatcctgactcag
ttaatggatcatttttggccactgattaccatacggtttcctttgtggac
agcagggaagacagtcccggatacacactgcagcgaggaatgaggtgtgt
ggccgcacataaagtctctcttagcctttctaagctccagcttcaggcat
gagagaggcagacataacttggaaagtcaggtactgcaatcttatcactc
ttctcccaagacagaattccaaagaggggctagctttactttgtaaatca
aggcgcagcttgagcacggactgctctcttcacacctctgcctcatcctg
ctaataagagtgtcatggaggacaccaaaccctttgtatacttcagccat
ttaaattctctccaggtgaaacccagatgagtgcacagagtatcatactg
gtcagatggctcagcagtaaaacatcgctgacactgggttgatccctgaa
actaagtagcaagatgagaccactcctgaaatggccctctcacttcatga
tcatgctgtagatcgggtacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_73226930_73228114
seq2: B6Ng01-003P03.b_44_1225

seq1  GAATTCTTTGTTTAGCTCTGTGCCCCATTTTCAATGGGGTTATTTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTGCCCCATTTTCAATGGGGTTATTTGGTTT  50

seq1  TCTGGACTCCATCTTCTTGAGTTCTTTATATATATTGGATCTGTTCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTCCATCTTCTTGAGTTCTTTATATATATTGGATCTGTTCTTAA  100

seq1  GAGCTGTCTCTTTTCCTGTCCACCCATCTTTTCATTTATTTGGGAGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCTCTTTTCCTGTCCACCCATCTTTTCATTTATTTGGGAGTATT  150

seq1  TCCTTCTTGGCTATCTGTAAAAAGGCATGGTTAATCTTACTTCTTAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTGGCTATCTGTAAAAAGGCATGGTTAATCTTACTTCTTAAGTG  200

seq1  GTTGATGTAATAGACATTCTACAGGGGAGGACCAGGACATGTTGGACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTAATAGACATTCTACAGGGGAGGACCAGGACATGTTGGACAGG  250

seq1  ATCAAAGGATCTCTGGGTGGACATGGCTCCTTTAAATCAGTGTCTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGATCTCTGGGTGGACATGGCTCCTTTAAATCAGTGTCTCTGCT  300

seq1  GACCACTTTCCATTGAGCAAGCCTGGGCTATGGTCGGCCTCTGAAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTTTCCATTGAGCAAGCCTGGGCTATGGTCGGCCTCTGAAGCCTT  350

seq1  CTCATCCGGAATCATGAGCACCATCGTTGCTAAATGATCTCTGATTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCGGAATCATGAGCACCATCGTTGCTAAATGATCTCTGATTCCAT  400

seq1  TTGTACATCCCGAACCTTTATTCTTCCCACTAAAACCAAATAACATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATCCCGAACCTTTATTCTTCCCACTAAAACCAAATAACATATAG  450

seq1  TTTTTCAGTCTATATACCAATCATATTAGAATAAATATTTCTTTCCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGTCTATATACCAATCATATTAGAATAAATATTTCTTTCCAAAT  500

seq1  TTATTTCCACTCAGAACTTTCTTTGAAAATGATGCCTTTCAGATATAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCACTCAGAACTTTCTTTGAAAATGATGCCTTTCAGATATAAAC  550

seq1  AAGTTAAAATGAAGTCATATTGAGCTGGAAGTAGGCTGCTGTCCTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAATGAAGTCATATTGAGCTGGAAGTAGGCTGCTGTCCTTTGAA  600

seq1  AAATAACTTGGAGTTAGAGGTACACAGAGAAGAATGCCATGGGAAGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTGGAGTTAGAGGTACACAGAGAAGAATGCCATGGGAAGATGG  650

seq1  AGGCAGGAGCTACAGTTATGATCCCACAAGCTAGAGTGCTGAGAATCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGCTACAGTTATGATCCCACAAGCTAGAGTGCTGAGAATCACT  700

seq1  AGAGCTCACCAGCATCTAGGAGGAAGTGGGCGAAATCTTCCTTTGCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCACCAGCATCTAGGAGGAAGTGGGCGAAATCTTCCTTTGCAGTC  750

seq1  TTCTCGGGGAGCATGGTCTTGCCAACAATTG-AATTTTTAAATTTTTCAT  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTCGGGGAGCATGGTCTTGCCAACAATTGAAATTTTTAAATTTTTCAT  800

seq1  TCTAAAATTGCAATAAAATACACTTCTATTCTTTCAAACCACCTCTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTGCAATAAAATACACTTCTATTCTTTCAAACCACCTCTTTTC  850

seq1  TGGGGACTTACTTCAGCAAACTCAGGAAGCCAATATAGCAACCAATGACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTTACTTCAGCAAACTCAGGAAGCCAATATAGCAACCAATGACT  900

seq1  GATTCCCATGAAAG-TCTGTACAGGAGGAATGGGTGAGGCAAAATCAGAA  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATTCCCATGAAAGTTCTGTACAGGAGGAATGGGTGAGGCAAAATCAGAA  950

seq1  CCAGAACAGTTTCTTTCTACCCATTTTCTCTTGATGTGTTCCATATTTTA  998
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  CCAGAACAGTTTCTTTTTACCCATTTTCTCTTGATGTGTT-CATATTTTA  999

seq1  GGTATGCACTAGACTCAGGAAATATAATGCACA-TCATGCTATGGGATTG  1047
      |   ||||||||||||| ||||||| ||||||| ||||||||||||||||
seq2  GTATTGCACTAGACTCA-GAAATAT-ATGCACATTCATGCTATGGGATTG  1047

seq1  TCCACACTGGGCTCTGAGGTCATAGCATC-TTAGTTCATGAAGTCTCTTA  1096
      || ||    |||||||| ||||||||||| ||||||||||||||||||| 
seq2  TCAAC---TGGCTCTGA-GTCATAGCATCTTTAGTTCATGAAGTCTCTTT  1093

seq1  GGACTTGAC-TCTAATTAACTCTAGAG-AAGAACGTTTGAACTTCAGGCT  1144
       |||||||| ||||||||  ||||||| ||||||||||||||||||| ||
seq2  AGACTTGACTTCTAATTACTTCTAGAGAAAGAACGTTTGAACTTCAGCCT  1143

seq1  GAATGAAGATGTAAAAATTTATAGATCATACC-GACCTATGT  1185
      ||   |||||||||||   |||||| |||||| |||||||||
seq2  GATGAAAGATGTAAAA---TATAGACCATACCGGACCTATGT  1182

seq1: chr1_73324922_73326063
seq2: B6Ng01-003P03.g_65_1185 (reverse)

seq1  GGTACCCGAATTCTACAGCATGATCATGAAAGTGAGAGGGCAATTTCAGG  50
      |||||||||  ||||||||||||||||| |||||||||||| |||||| |
seq2  GGTACCCGA--TCTACAGCATGATCATG-AAGTGAGAGGGCCATTTCA-G  46

seq1  GAGTTGGTTCTCATCTTTTGCTACTCTAGGTTTCAGGGATCAAACCCAGG  100
      ||||  | |||||||  |||||||| || |||||||||||| ||||||| 
seq2  GAGT--GGTCTCATC--TTGCTACT-TA-GTTTCAGGGATC-AACCCAG-  88

seq1  TTGTCAGGCGATTGGTTTTACCTGCTGAGCCATCTGACCAGTTATTGATA  150
       ||||| |||||  |||||| |||||||||||||||||||||   |||||
seq2  -TGTCA-GCGAT--GTTTTA-CTGCTGAGCCATCTGACCAGT--ATGATA  131

seq1  CTCTGTGCACTCATCTGGGTTTCACCTGGGAGAGGAATTTAAATGGCTGA  200
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  CTCTGTGCACTCATCTGGGTTTCACCT-GGAGA-GAATTTAAATGGCTGA  179

seq1  AGTATACAAAGGGTTTGGTGTCCTCCATGACACTCTTATTAGCAGGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACAAAGGGTTTGGTGTCCTCCATGACACTCTTATTAGCAGGATGA  229

seq1  GGCAGAGGTGTGAAGAGAGCAGTCCGTGCTCAAGCTGCGCCTTGATTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTGTGAAGAGAGCAGTCCGTGCTCAAGCTGCGCCTTGATTTAC  279

seq1  AAAGTAAAGCTAGCCCCTCTTTGGAATTCTGTCTTGGGAGAAGAGTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAGCTAGCCCCTCTTTGGAATTCTGTCTTGGGAGAAGAGTGATA  329

seq1  AGATTGCAGTACCTGACTTTCCAAGTTATGTCTGCCTCTCTCATGCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCAGTACCTGACTTTCCAAGTTATGTCTGCCTCTCTCATGCCTGA  379

seq1  AGCTGGAGCTTAGAAAGGCTAAGAGAGACTTTATGTGCGGCCACACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGCTTAGAAAGGCTAAGAGAGACTTTATGTGCGGCCACACACCT  429

seq1  CATTCCTCGCTGCAGTGTGTATCCGGGACTGTCTTCCCTGCTGTCCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCGCTGCAGTGTGTATCCGGGACTGTCTTCCCTGCTGTCCACAA  479

seq1  AGGAAACCGTATGGTAATCAGTGGCCAAAAATGATCCATTAACTGAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCGTATGGTAATCAGTGGCCAAAAATGATCCATTAACTGAGTCA  529

seq1  GGATGAATAGATAGCTAATAGCAGGGGAGGAATGGAAAGACAGTTTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATAGATAGCTAATAGCAGGGGAGGAATGGAAAGACAGTTTGTCT  579

seq1  GGAATCCAGCTTTTAAACATATCCTGTCCCCTCCAAAAAATACAGGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCAGCTTTTAAACATATCCTGTCCCCTCCAAAAAATACAGGGAAG  629

seq1  CCCGGAGAAACAGAGTCCAAAATAGTATTTCTCAAATGTCTAATTGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAGAAACAGAGTCCAAAATAGTATTTCTCAAATGTCTAATTGCATA  679

seq1  GAGATCAAACAAAGACTGAAGAGAGTGTCAGTTAGCTATGGTTGACAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAAACAAAGACTGAAGAGAGTGTCAGTTAGCTATGGTTGACAGTC  729

seq1  CCTTATATTCTGAGAGTTACTCAATGCCATTTTTAATTTTCTTTTACCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATATTCTGAGAGTTACTCAATGCCATTTTTAATTTTCTTTTACCGC  779

seq1  GTCTGCTTGTACCTCTGAGTAGCTTTCAAGCAGAAGGGTGCCCTGACACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTGTACCTCTGAGTAGCTTTCAAGCAGAAGGGTGCCCTGACACG  829

seq1  TGTAAAAACCGCGAACTGGAATGCCAACTCCACCTCGTTCCACCTCTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAACCGCGAACTGGAATGCCAACTCCACCTCGTTCCACCTCTGAC  879

seq1  AACTCCTGCATGCCTCCTACCCTCTCGTTTATTTATAAAAACAATGCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGCATGCCTCCTACCCTCTCGTTTATTTATAAAAACAATGCCAC  929

seq1  CCATCATGCAGGATATTTGTGAGGAGTAAATCAAAGCATCCGGAACAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGCAGGATATTTGTGAGGAGTAAATCAAAGCATCCGGAACAATT  979

seq1  CCTGACAGACCAGGGAACAGGTGACAGAGAGCCATCTGAGGTCTCAGGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGACCAGGGAACAGGTGACAGAGAGCCATCTGAGGTCTCAGGAT  1029

seq1  GTTTTCCAAGATCAGTCGGCAGTTCAGGTAGTTTTCTTCCATTTCCCACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCAAGATCAGTCGGCAGTTCAGGTAGTTTTCTTCCATTTCCCACA  1079

seq1  CTACAGATTTCACACACTTGTTTGTTCATTATAAGTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATTTCACACACTTGTTTGTTCATTATAAGTGAATTC  1121