BAC Information

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BAC

Clone NameB6Ng01-004B24
Chromosome1 (Build37)
Map Location 80,127,603 - 80,275,849
singlet/doubletdoublet
Overlap geneA830043J08Rik, 2310015K22Rik, Cul3
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325
Downstream geneEG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004B24.bB6Ng01-004B24.g
ACCDH841621DH841622
length3251,077
definitionDH841621|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B24, 5' end.DH841622|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,127,603 - 80,127,927)(80,274,785 - 80,275,849)
sequence
tatcaaaatatgaagcaatgtcacttaaacttgtacaaagcaagaaataa
gaaggaaatttttaaatgttcctagaacacacttttgacatctgacaaaa
ggaacacacacaaaaatatcacattcagttatgcacaaaataaatcagat
tatcatccccccagatgccaacaaagtagttgacaagattttgtatttgt
ttatttatggaaacggggatacctgggtaatgtctcaacattagaataat
gatatgttcagtctctgttctctgtctctttctgtctttctctcatgtgt
atgtgcatgtgtatgtatatatagg
gaattctctttatatttgcaccccatttttaaattaggttatttggtttg
ttgatgtctagtttcttaagttctttatatatttttttatcagtcctctg
ttggatgtggcatcagtgaagatattttcctattctgtagtctgctgttt
tgtcctttgacaggacctgcattaatttcttatctcaaatgttggatctt
ttatattttgaaagtctgtttcttcagttttattagtatcttgggtagtt
ccagataccttaaggccactctttacaagtagttagagtagttggaactt
gacaggtgactcagtggttaagagatttaattggcactgagcccatgtta
cacagctcacaattgcccttaactctacctccaagggctctgacacctct
gtatcactaaggcaaccacacttttgtacacaaagtcatatagacacatt
tataaacgtgattaaaactaacaaataaaaaatcttgaaaagtaactgct
tatgctacagaatttaaactttaaatactcaaagctttttcctgtgttgg
aaacagttgtatagccgaagaatcagccaaacaaatggagctccctgaat
ccttggattttaaaatgttgtggatcttcaagttgaacataactctttca
aggttttgggcccgttgaaacctagtggttctttgattactttttagagt
catgattttgttttttgttttttttttttaaatctaataatgcctgtggt
tatttatagtattgtaagaatataaataattacttattttttgtcctttg
ggtttttgtttgtttgtttttgtttttaaagtgcagaaagcctaatggtt
gaaagttgatgctattatgtattttattttaagtttgacatccatcatac
aggcgttttattgaaagagattcataacacctgttacttacagctaatgt
tagattgctaatgtggtaaaaatgtcaaaaccagaaatgaagattactgt
tttgtctaaattgactatcatgtaattcatttcaaataattgtaaatcat
taaaaaaattattaacagatccgatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80127603_80127927
seq2: B6Ng01-004B24.b_52_376

seq1  TATCAAAATATGAAGCAATGTCACTTAAACTTGTACAAAGCAAGAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAATATGAAGCAATGTCACTTAAACTTGTACAAAGCAAGAAATAA  50

seq1  GAAGGAAATTTTTAAATGTTCCTAGAACACACTTTTGACATCTGACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATTTTTAAATGTTCCTAGAACACACTTTTGACATCTGACAAAA  100

seq1  GGAACACACACAAAAATATCACATTCAGTTATGCACAAAATAAATCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACACACAAAAATATCACATTCAGTTATGCACAAAATAAATCAGAT  150

seq1  TATCATCCCCCCAGATGCCAACAAAGTAGTTGACAAGATTTTGTATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCCCCCAGATGCCAACAAAGTAGTTGACAAGATTTTGTATTTGT  200

seq1  TTATTTATGGAAACGGGGATACCTGGGTAATGTCTCAACATTAGAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGGAAACGGGGATACCTGGGTAATGTCTCAACATTAGAATAAT  250

seq1  GATATGTTCAGTCTCTGTTCTCTGTCTCTTTCTGTCTTTCTCTCATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTTCAGTCTCTGTTCTCTGTCTCTTTCTGTCTTTCTCTCATGTGT  300

seq1  ATGTGCATGTGTATGTATATATAGG  325
      |||||||||||||||||||||||||
seq2  ATGTGCATGTGTATGTATATATAGG  325

seq1: chr1_80274785_80275849
seq2: B6Ng01-004B24.g_67_1143 (reverse)

seq1  TGATTGGATCTGTTTAATATTTTTTAAATGA-TTACAATTATTTGAAATG  49
      |||| ||||||||| |  ||||||| ||||| ||||||||||||||||||
seq2  TGATCGGATCTGTTAATAATTTTTTTAATGATTTACAATTATTTGAAATG  50

seq1  AA-TACATGATAATTCATTTAGACAAAACTGTATCTTTCATTTCTGGTTT  98
      || ||||||||| |  ||||||||||||| |||   ||||||||||||||
seq2  AATTACATGATAGTCAATTTAGACAAAACAGTAATCTTCATTTCTGGTTT  100

seq1  TGACATTTTTACCACATTAGACATCTAACATTAGCTGTAGGT-ACA-GTG  146
      ||||||||||||||||||||  ||||||||||||||||| || ||| |||
seq2  TGACATTTTTACCACATTAGCAATCTAACATTAGCTGTAAGTAACAGGTG  150

seq1  TTATGAATCTCTTTCAAT-AAACGCCTGTATGATGGATGTC-AACTT-AA  193
      |||||||||||||||||| |||||||||||||||||||||| ||||| ||
seq2  TTATGAATCTCTTTCAATAAAACGCCTGTATGATGGATGTCAAACTTAAA  200

seq1  ATAAAATACATATTAGCATC-ACTTTC-ACCATTAGGCTTTCTGCAC-TT  240
      |||||||||||| ||||||| |||||| ||||||||||||||||||| ||
seq2  ATAAAATACATAATAGCATCAACTTTCAACCATTAGGCTTTCTGCACTTT  250

seq1  AAAAACAAAAACAAACAAACAAAAAACCAAAGGAC-AAAAATAAGTAATT  289
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  AAAAACAAAAACAAACAAACAAAAACCCAAAGGACAAAAAATAAGTAATT  300

seq1  ATTTATATTCTTACAATACTATAAATAACCACAGGCATTATTAGATTT-A  338
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTTATATTCTTACAATACTATAAATAACCACAGGCATTATTAGATTTAA  350

seq1  AAAAAAAAAACAAAAAACAAAATCATGACTCTAAAAAGTAATCAAAGAAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAAAAAACAAAATCATGACTCTAAAAAGTAATCAAAGAAC  400

seq1  CACTAGGTTTCAACGGGCCCAAAACCTTGAAAGAGTTATGTTCAACTTGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGTTTCAACGGGCCCAAAACCTTGAAAGAGTTATGTTCAACTTGA  450

seq1  AGATCCACAACATTTTAAAATCCAAGGATTCAGGGAGCTCCATTTGTTTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACAACATTTTAAAATCCAAGGATTCAGGGAGCTCCATTTGTTTG  500

seq1  GCTGATTCTTCGGCTATACAACTGTTTCCAACACAGGAAAAAGCTTTGAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTCTTCGGCTATACAACTGTTTCCAACACAGGAAAAAGCTTTGAG  550

seq1  TATTTAAAGTTTAAATTCTGTAGCATAAGCAGTTACTTTTCAAGATTTTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAGTTTAAATTCTGTAGCATAAGCAGTTACTTTTCAAGATTTTT  600

seq1  TATTTGTTAGTTTTAATCACGTTTATAAATGTGTCTATATGACTTTGTGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTAGTTTTAATCACGTTTATAAATGTGTCTATATGACTTTGTGT  650

seq1  ACAAAAGTGTGGTTGCCTTAGTGATACAGAGGTGTCAGAGCCCTTGGAGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTGTGGTTGCCTTAGTGATACAGAGGTGTCAGAGCCCTTGGAGG  700

seq1  TAGAGTTAAGGGCAATTGTGAGCTGTGTAACATGGGCTCAGTGCCAATTA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTAAGGGCAATTGTGAGCTGTGTAACATGGGCTCAGTGCCAATTA  750

seq1  AATCTCTTAACCACTGAGTCACCTGTCAAGTTCCAACTACTCTAACTACT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTAACCACTGAGTCACCTGTCAAGTTCCAACTACTCTAACTACT  800

seq1  TGTAAAGAGTGGCCTTAAGGTATCTGGAACTACCCAAGATACTAATAAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGAGTGGCCTTAAGGTATCTGGAACTACCCAAGATACTAATAAAA  850

seq1  CTGAAGAAACAGACTTTCAAAATATAAAAGATCCAACATTTGAGATAAGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAACAGACTTTCAAAATATAAAAGATCCAACATTTGAGATAAGA  900

seq1  AATTAATGCAGGTCCTGTCAAAGGACAAAACAGCAGACTACAGAATAGGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGCAGGTCCTGTCAAAGGACAAAACAGCAGACTACAGAATAGGA  950

seq1  AAATATCTTCACTGATGCCACATCCAACAGAGGACTGATAAAAAAATATA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTCACTGATGCCACATCCAACAGAGGACTGATAAAAAAATATA  1000

seq1  TAAAGAACTTAAGAAACTAGACATCAACAAACCAAATAACCTAATTTAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACTTAAGAAACTAGACATCAACAAACCAAATAACCTAATTTAAA  1050

seq1  AATGGGGTGCAAATATAAAGAGAATTC  1065
      |||||||||||||||||||||||||||
seq2  AATGGGGTGCAAATATAAAGAGAATTC  1077