BAC Information

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BAC

Clone NameB6Ng01-004H08
Chromosome1 (Build37)
Map Location 80,301,445 - 80,302,561
singlet/doubletsinglet
Overlap geneCul3
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik
Downstream geneEG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004H08.g
ACCDH841863
length1,104
definitionDH841863|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattaattcatgggtttcaaaaatgcaccatagcttgagatcctc
cgtaacctgacaaggtttaacaaatgtttggtgtttcaaaccggtttagg
ctagacttaatgagagttgtgttggtccgtggaagacgttggaattaaat
atttgtagaggctggcagcataatactcaagttcttgtcctcttgggttg
cttcctcatccacatagcaaccaaactgtgtagttggttggctccctggt
tgtgaaatctgcgtgcacataccatctaacccatttttcctctatacttg
aactcatttctaagttacaaatatagcgaatacagtacagatgttccaaa
aggctgtgttgtttggggaataatgacaagcacgagaggtgtgtacggtt
tcagtagaacacaggcattttcttccaaatatttttgattcattgttact
tgaatctgtgaatgtgggactcatagatcagaaggtccaacagtgtaatt
tcaaagaattatacaaacttgggatacaactatgttacttcttcatccta
aagttataagcatagaagaaatctgtcttctgcacaggtgttttcattga
gctgatagcacaggggcaactttagctagaggaggtgatagcaagcttgt
agattaggaaagggaaaatttatgattagactaagaagacatttcagata
tgagggaacttcatgaatccccccttcccgcccccccagacagggcttct
ctgtgtagccctagctgtcctggaactcactttgtagaccaggctggcct
cgaactcagaaatctgcctgcctctgcctcctgagtgcttagcttgttaa
agtgactgatagttgacacgatcttctatataccaagcgctgtatgtatt
atttgtagaggaagaatgctaaaaagagaggcattctgccacatggaggc
atttagatttagtggaagaagcaataaatagataggtatgtggacagtag
cagtggagagttggaacaaggtgaaacgaagataagagtagaagagatag
atgatgtatatttaagagtgtatagagagagttgaaaagtatctgtagag
agat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80301445_80302561
seq2: B6Ng01-004H08.g_65_1168 (reverse)

seq1  ATCTCTCTACAGATACTGTTTCTACTCTCTCTATACACTCTTTAAATATA  50
      ||||||||||||||||| |||| ||||||||||||||||| |||||||||
seq2  ATCTCTCTACAGATACT-TTTCAACTCTCTCTATACACTC-TTAAATATA  48

seq1  CATTCTATTTCTATCTC-TCTACTTCTTTATTCTCTGTTTCACCTTTGTT  99
      |||      |||||||| ||||||  | | |||   |||||||| |||||
seq2  CAT----CATCTATCTCTTCTACTCTTATCTTC---GTTTCACC-TTGTT  90

seq1  CCAACTTCTCACTGCTACCTGTCCACATTACCTATCTATTTATTGCTTCT  149
      ||||||   |||||||| ||||||||| ||||||||||||||||||||||
seq2  CCAACTCTCCACTGCTA-CTGTCCACA-TACCTATCTATTTATTGCTTCT  138

seq1  TCCACTAAAATCTAAATGCCTCCATGGTGGCAGAATGCCTCTCTTTTTAG  199
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCACT-AAATCTAAATGCCTCCAT-GTGGCAGAATGCCTCTCTTTTTAG  186

seq1  CATTCTTCCTCTACAAATAATACATACAGCGCTTGGTATATAGAAGATCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCCTCTACAAATAATACATACAGCGCTTGGTATATAGAAGATCG  236

seq1  TGTCAACTATCAGTCACTTTAACAAGCTAAGCACTCAGGAGGCAGAGGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTATCAGTCACTTTAACAAGCTAAGCACTCAGGAGGCAGAGGCA  286

seq1  GGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  336

seq1  ACAGCTAGGGCTACACAGAGAAGCCCTGTCTGGGGGGGCGGGAAGGGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAGGGCTACACAGAGAAGCCCTGTCTGGGGGGGCGGGAAGGGGGG  386

seq1  ATTCATGAAGTTCCCTCATATCTGAAATGTCTTCTTAGTCTAATCATAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAAGTTCCCTCATATCTGAAATGTCTTCTTAGTCTAATCATAAA  436

seq1  TTTTCCCTTTCCTAATCTACAAGCTTGCTATCACCTCCTCTAGCTAAAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTTCCTAATCTACAAGCTTGCTATCACCTCCTCTAGCTAAAGT  486

seq1  TGCCCCTGTGCTATCAGCTCAATGAAAACACCTGTGCAGAAGACAGATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTGTGCTATCAGCTCAATGAAAACACCTGTGCAGAAGACAGATTT  536

seq1  CTTCTATGCTTATAACTTTAGGATGAAGAAGTAACATAGTTGTATCCCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGCTTATAACTTTAGGATGAAGAAGTAACATAGTTGTATCCCAA  586

seq1  GTTTGTATAATTCTTTGAAATTACACTGTTGGACCTTCTGATCTATGAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATAATTCTTTGAAATTACACTGTTGGACCTTCTGATCTATGAGT  636

seq1  CCCACATTCACAGATTCAAGTAACAATGAATCAAAAATATTTGGAAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTCACAGATTCAAGTAACAATGAATCAAAAATATTTGGAAGAAA  686

seq1  ATGCCTGTGTTCTACTGAAACCGTACACACCTCTCGTGCTTGTCATTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGTTCTACTGAAACCGTACACACCTCTCGTGCTTGTCATTATT  736

seq1  CCCCAAACAACACAGCCTTTTGGAACATCTGTACTGTATTCGCTATATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACAACACAGCCTTTTGGAACATCTGTACTGTATTCGCTATATTT  786

seq1  GTAACTTAGAAATGAGTTCAAGTATAGAGGAAAAATGGGTTAGATGGTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTAGAAATGAGTTCAAGTATAGAGGAAAAATGGGTTAGATGGTAT  836

seq1  GTGCACGCAGATTTCACAACCAGGGAGCCAACCAACTACACAGTTTGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGCAGATTTCACAACCAGGGAGCCAACCAACTACACAGTTTGGTT  886

seq1  GCTATGTGGATGAGGAAGCAACCCAAGAGGACAAGAACTTGAGTATTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTGGATGAGGAAGCAACCCAAGAGGACAAGAACTTGAGTATTATG  936

seq1  CTGCCAGCCTCTACAAATATTTAATTCCAACGTCTTCCACGGACCAACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCCTCTACAAATATTTAATTCCAACGTCTTCCACGGACCAACAC  986

seq1  AACTCTCATTAAGTCTAGCCTAAACCGGTTTGAAACACCAAACATTTGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCATTAAGTCTAGCCTAAACCGGTTTGAAACACCAAACATTTGTT  1036

seq1  AAACCTTGTCAGGTTACGGAGGATCTCAAGCTATGGTGCATTTTTGAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTGTCAGGTTACGGAGGATCTCAAGCTATGGTGCATTTTTGAAAC  1086

seq1  CCATGAATTAATGAATTC  1117
      ||||||||||||||||||
seq2  CCATGAATTAATGAATTC  1104