BAC Information

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BAC

Clone NameB6Ng01-004K18
Chromosome15 (Build37)1 (Build37)
Map Location 61,481,908 - 61,482,421169,404,053 - 169,405,010
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004K18.bB6Ng01-004K18.g
ACCDH842018DH842019
length218951
definitionDH842018|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K18, 5' end.DH842019|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,481,908 - 61,482,421)(169,404,053 - 169,405,010)
sequence
gaattcactctgtagagcaggctggcctcgaactcagaaatctgtctgcc
tctgcctcccaagtgctgtgattaaaggcgtgtgccaccactgaccggcc
tgactacagatcttaaccaggtccttcctaccacttagcagagattgttt
cctcttctctggactagatcagtggttttcaagttgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtg
gaattcctccttggccaagtccccctcaaactggctttcaaagctcctca
aaattgccctaaacaccaatccgctgtgcagcagtgttttaagccgagca
agtcattgctgaaggggatggttagggtatagggtcaatcaaaattagaa
gggagaatccttaggcctaatgagggaatatagtataaagtcgaagcata
taaattttatccatgtcaatttgtcaatgctcagcatcccaatagctgga
cagccttaaagtttcttaacttaaaattcacattcctcaaggacaaaact
gagctaatgttagtgacttcacctgaggttttctccctcagttagaaaag
ctcatctcctagtgttggcttagggttgtagagatggctcacagtaaaat
gcctgatgttcaggtatgaggatctgagttcagctcctgaggacccatgg
gaaaagctgggtgtggtggcacacatctgtgacctcagcctaagataaag
tggattctggccagagcaggagtctttctgactattcagtttaggtgaga
tggagagttccagacttaatgagccatcctgcctccaaggaaagtggaaa
cagggaggttcaggggtcctatcaggaagggacttagaacctccaatccc
acatatacccagaaccccaggaacagaggctacagagaccagcggcttct
cctctctccttctcacacagcactgcggagtgaggggatctgagaatgtc
gcctttcaactcagcacagctgtgccagcaacccactccaccagcaccct
ttgttactttttatttcctattagttaattttcatgcttgcacacgtgcc
tcacggtggggtttgctttttttattttttatttttttccattttattag
tttagctcatttacattccatgctataccaaaagtcccaatatcaccacc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_61481908_61482421
seq2: B6Ng01-004K18.b_68_263 (reverse)

seq1  CACACACACACACATGGAAACACCAAGTACTAACAGGCACAGCACATGTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATACACATGAGAGGAAAACTTTTAAGATTCACCTCTCAAGGCTGAAAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AACCCAAATAAGTGATATTGAATATGTACAAGTCCATCTGCTCCTAGGCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GAGCCCAAAGAGGCTAATTTTGGCTTAATCTGAAGAAAACTGACTGCCTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGATTTCTGACCCAAGTAAGAAAGCTTAATGGAGGACCAGACATTATAG  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAACAATTCATACCTGTGGCTAACCAGAGTTTCAATAGCCAGTTTGAGAG  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACTAGTGGATATATTCTCTAATCAGAATAAACA-AGAAATATAAGAAGTA  349
                                    ||| | | | | |      |
seq2  -----------------------------CACACACACACACA-----CA  16

seq1  CTTAGAAAAAAAGAGAAATACTTAGAAACCA-TAAT-AATTTCAGAGATG  397
      |  | | | | | | | | ||||  |||||| | ||  | | |||||| |
seq2  CACACACACACACACACA-ACTTGAAAACCACTGATCTAGTCCAGAGAAG  65

seq1  AACACACACACAC--------------ACACACACACACAAGCATCAG-A  432
      |  | |||  | |              |   ||      ||| ||| | |
seq2  AGGAAACAATCTCTGCTAAGTGGTAGGAAGGACCTGGTTAAG-ATCTGTA  114

seq1  CACAGGCCGGGCAGTGGTGGTGCACGCCTTTAATCCCTGCACTTGGGAGG  482
        |||||||| |||||||||  ||||||||||||| | ||||||||||||
seq2  GTCAGGCCGGTCAGTGGTGGCACACGCCTTTAATCACAGCACTTGGGAGG  164

seq1  CAGAGGCAGGCAGATTTCTGAGTTCGAGGCCA  514
      ||||||||| ||||||||||||||||||||||
seq2  CAGAGGCAGACAGATTTCTGAGTTCGAGGCCA  196

seq1: chr1_169404053_169405010
seq2: B6Ng01-004K18.g_71_1021

seq1  GAATTCCTCCTTGGCCAAGTCCCCCTCAAACTGGCTTTCAAAGCTCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTGGCCAAGTCCCCCTCAAACTGGCTTTCAAAGCTCCTCA  50

seq1  AAATTGCCCTAAACACCAATCCGCTGTGCAGCAGTGTTTTAAGCCGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCCTAAACACCAATCCGCTGTGCAGCAGTGTTTTAAGCCGAGCA  100

seq1  AGTCATTGCTGAAGGGGATGGTTAGGGTATAGGGTCAATCAAAATTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTGCTGAAGGGGATGGTTAGGGTATAGGGTCAATCAAAATTAGAA  150

seq1  GGGAGAATCCTTAGGCCTAATGAGGGAATATAGTATAAAGTCGAAGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATCCTTAGGCCTAATGAGGGAATATAGTATAAAGTCGAAGCATA  200

seq1  TAAATTTTATCCATGTCAATTTGTCAATGCTCAGCATCCCAATAGCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTATCCATGTCAATTTGTCAATGCTCAGCATCCCAATAGCTGGA  250

seq1  CAGCCTTAAAGTTTCTTAACTTAAAATTCACATTCCTCAAGGACAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTAAAGTTTCTTAACTTAAAATTCACATTCCTCAAGGACAAAACT  300

seq1  GAGCTAATGTTAGTGACTTCACCTGAGGTTTTCTCCCTCAGTTAGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAATGTTAGTGACTTCACCTGAGGTTTTCTCCCTCAGTTAGAAAAG  350

seq1  CTCATCTCCTAGTGTTGGCTTAGGGTTGTAGAGATGGCTCACAGTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCCTAGTGTTGGCTTAGGGTTGTAGAGATGGCTCACAGTAAAAT  400

seq1  GCCTGATGTTCAGGTATGAGGATCTGAGTTCAGCTCCTGAGGACCCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATGTTCAGGTATGAGGATCTGAGTTCAGCTCCTGAGGACCCATGG  450

seq1  GAAAAGCTGGGTGTGGTGGCACACATCTGTGACCTCAGCCTAAGATAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTGGGTGTGGTGGCACACATCTGTGACCTCAGCCTAAGATAAAG  500

seq1  TGGATTCTGGCCAGAGCAGGAGTCTTTCTGACTATTCAGTTTAGGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTGGCCAGAGCAGGAGTCTTTCTGACTATTCAGTTTAGGTGAGA  550

seq1  TGGAGAGTTCCAGACTTAATGAGCCATCCTGCCTCCAAGGAAAGTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTCCAGACTTAATGAGCCATCCTGCCTCCAAGGAAAGTGGAAA  600

seq1  CAGGGAGGTTCAGGGGTCCTATCAGGAAGGGACTTAGAACCTCCAATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGTTCAGGGGTCCTATCAGGAAGGGACTTAGAACCTCCAATCCC  650

seq1  ACATATACCCAGAACCCCAGGAACAGAGGCTACAGAGACCAGCGGCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACCCAGAACCCCAGGAACAGAGGCTACAGAGACCAGCGGCTTCT  700

seq1  CCTCTCTCCTTCTCACACAGCACTGCGGAGTGAGGGGATCTGAGAATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCTTCTCACACAGCACTGCGGAGTGAGGGGATCTGAGAATGTC  750

seq1  GCCTTTCAACTCAGCACAGCTGTGCCAGCAACCCACTCCACCAGCACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCAACTCAGCACAGCTGTGCCAGCAACCCACTCCACCAGCACCCT  800

seq1  TTGTTACTTTTTATTTCCTATTAGTTAATTTTCATGCTTGCACACGTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACTTTTTATTTCCTATTAGTTAATTTTCATGCTTGCACACGTGCC  850

seq1  TCACGGT-GGGTTTGCTTTTTTTTATTTTTTATTTTTTTTCCATTTTTTA  899
      ||||||| |||||||| ||||||||||||||| ||||||||||  |||||
seq2  TCACGGTGGGGTTTGC-TTTTTTTATTTTTTA-TTTTTTTCCA--TTTTA  896

seq1  TTAGGTTTTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCA  949
      ||||   |||||||||||||||||  | |||||||||||||||| ||| |
seq2  TTAG---TTTAGCTCATTTACATT--CCATGCTATACCAAAAGT-CCCAA  940

seq1  TAT--CCACCC  958
      |||  ||||||
seq2  TATCACCACCC  951