BAC Information

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BAC

Clone NameB6Ng01-004O04
Chromosome1 (Build37)
Map Location 51,048,306 - 51,184,375
singlet/doubletdoublet
Overlap geneTmeff2
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O04.bB6Ng01-004O04.g
ACCDH842177DH842178
length1,144950
definitionDH842177|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O04, 5' end.DH842178|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,183,219 - 51,184,375)(51,048,306 - 51,049,270)
sequence
gaattcaagcatacagtcagtgagtctcaacaccaacaccgatgagaaaa
acattagagatgtcctccattaaaaggcctgggaactggagaggaaatgg
gaccagggagggtgaagagtgaaggaacgtggagatagttgcatggtcac
tcagacaccagtttgctacatggaaggaaccagtataacctgttggctat
gaacacaagcaacacagagcaccgaggtcttatgcttaaggggctgtccc
aactcaatacggaaaaattattccttactctcccgttgttctgtcacaaa
acttctgtttctaggctcacacagtctcaggtgctcctcagttttactgc
tcgttcctggatctggtctcttctgtctctgatagctctgttttgaaagt
ttcttttgacagaacttgggaaggatagctagtgatatgataaatcagtg
cagcagtaccaaatcatgctgtttgactcatgagccatggagaaggggct
gtaagaactcaggctctcggcttcctcgtttgtcttttcacagctgaaga
aaacacaatactagtccttgatgaccacagtggcatagatatcccacttg
ccagaggagatactttcaccagccagtcactgcatacattctgtgatatt
tgggtgtagttctaggtactgatataatgtgaacgtggtagcagtttgac
agtttattgctccttcagaccactgaaaaatatataaggctctggtaaga
aggtggcagaattatcatacaagctaatggtgaagatgcaggtcactggc
tttagcagaatatgcaaatgaatccagtattttttttttcttatatagaa
atgaaaggcattcatttttaaaaacagaaaccatccttcttccctgcttt
tggcaaataattgcgttattattcattctgagaggagtaactagttaatt
acagcatgccacaagcattacatgcacgcccggatgtggagggctgagca
cggcacacgtgctttcaggtctggtttgtttgctttcttcttttctcttt
tttctgtgtatctcagtctttgacatttgacatgcggattatatagcttt
cttttcttctcagctacaaagaaaaagaatcagcctacttgaaa
gaattcctgcccacatttgaagggaaattacacatgcacgtataatcccc
tagtaatgtaggagatattgtcttattccatacttagagaaaggtgagtg
ccagcttaaatttaaaatatacaaaataaaggccattatgcatttggaca
tcacaatgcagagttgagaggttttatggaagataaaaggctacagatga
gagagcagcctctgaaaatagggaaaaaagctcagcaattaaccttaaga
tgaagtagctttcctttctcaccatgatcaactcatacttaagtctttaa
atggaaaatgacttgtagttaacctttatgattcagaaaaccatttaatt
gtaattatagctaatccaattaaagatggattataataactgctgaatta
ataggtcatgaaacactgagtttaattatgagtgtatttattttggaaaa
attactcttaaggtattatgtaattttaaaaattattttgagctcaaaat
tatataggttgtgattcataagtaaaagaagaagaaggagtgaatacccc
agagctcttcaaggcataagggcagaacaggaaacaggacaatatgagtg
acaaagcttgattttaaataactaaactcaatttttttaaattcacaacc
ttgaaaaatactattagtagtttagtttcatccctagaaacatcaaaatt
attgttaaactttatattctaatgagattagtagaattaaaagaaatttt
acttttaaaaccacaaatcgtcacatcgcaccactgtaacttctgaaact
cagacccttgggtctttagttgcatatttagagggaaatgtaactgtgtt
taagtagaacaatgaccagtgtacatcataagaaatattacataggtttg
tctttttctcaattaaagttgaaacagactgagtagatataaacaacaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51183219_51184375
seq2: B6Ng01-004O04.b_45_1188 (reverse)

seq1  TTTCAAGTATGGCTGATTCTTTGTCTTTGTAGCTGAGAAGAAAAGAAAGC  50
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  TTTCAAGTA-GGCTGATTCTTTTTCTTTGTAGCTGAGAAGAAAAGAAAGC  49

seq1  TATATAAT-CGCAGTGTCAAAATGTCAAAAGACTGAGATACACAGGAAAA  99
      |||||||| |||| |||| ||||||| ||||||||||||||||||  |||
seq2  TATATAATCCGCA-TGTC-AAATGTC-AAAGACTGAGATACACAG--AAA  94

seq1  AAAGGAAGAAAAGGAAAGAAAGCAAAACAAAACCAGACCCTGAAAGGCAC  149
      ||||  |||||||  |||||||||||   |||||||| ||||||| ||||
seq2  AAAG--AGAAAAG--AAGAAAGCAAA--CAAACCAGA-CCTGAAA-GCAC  136

seq1  GTGTGCCGTGCTCAGCCCTCCACATCCGGGCCTTGCATGTAATGCTTGTG  199
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  GTGTGCCGTGCTCAGCCCTCCACATCCGGG-CGTGCATGTAATGCTTGTG  185

seq1  GCATGCTGTAATTAACTAGTTACTCCTCTCAGAATGAATAATAACGCAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTGTAATTAACTAGTTACTCCTCTCAGAATGAATAATAACGCAAT  235

seq1  TATTTGCCAAAAGCAGGGAAGAAGGATGGTTTCTGTTTTTAAAAATGAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCAAAAGCAGGGAAGAAGGATGGTTTCTGTTTTTAAAAATGAAT  285

seq1  GCCTTTCATTTCTATATAAG-AAAAAAAAATACTGGATTCATTTGCATAT  348
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCTTTCATTTCTATATAAGAAAAAAAAAATACTGGATTCATTTGCATAT  335

seq1  TCTGCTAAAGCCAGTGACCTGCATCTTCACCATTAGCTTGTATGATAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAAAGCCAGTGACCTGCATCTTCACCATTAGCTTGTATGATAATT  385

seq1  CTGCCACCTTCTTACCAGAGCCTTATATATTTTTCAGTGGTCTGAAGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACCTTCTTACCAGAGCCTTATATATTTTTCAGTGGTCTGAAGGAG  435

seq1  CAATAAACTGTCAAACTGCTACCACGTTCACATTATATCAGTACCTAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACTGTCAAACTGCTACCACGTTCACATTATATCAGTACCTAGAA  485

seq1  CTACACCCAAATATCACAGAATGTATGCAGTGACTGGCTGGTGAAAGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCCAAATATCACAGAATGTATGCAGTGACTGGCTGGTGAAAGTAT  535

seq1  CTCCTCTGGCAAGTGGGATATCTATGCCACTGTGGTCATCAAGGACTAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGGCAAGTGGGATATCTATGCCACTGTGGTCATCAAGGACTAGT  585

seq1  ATTGTGTTTTCTTCAGCTGTGAAAAGACAAACGAGGAAGCCGAGAGCCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTTTCTTCAGCTGTGAAAAGACAAACGAGGAAGCCGAGAGCCTG  635

seq1  AGTTCTTACAGCCCCTTCTCCATGGCTCATGAGTCAAACAGCATGATTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTACAGCCCCTTCTCCATGGCTCATGAGTCAAACAGCATGATTTG  685

seq1  GTACTGCTGCACTGATTTATCATATCACTAGCTATCCTTCCCAAGTTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCTGCACTGATTTATCATATCACTAGCTATCCTTCCCAAGTTCTG  735

seq1  TCAAAAGAAACTTTCAAAACAGAGCTATCAGAGACAGAAGAGACCAGATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAACTTTCAAAACAGAGCTATCAGAGACAGAAGAGACCAGATC  785

seq1  CAGGAACGAGCAGTAAAACTGAGGAGCACCTGAGACTGTGTGAGCCTAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACGAGCAGTAAAACTGAGGAGCACCTGAGACTGTGTGAGCCTAGA  835

seq1  AACAGAAGTTTTGTGACAGAACAACGGGAGAGTAAGGAATAATTTTTCCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGTTTTGTGACAGAACAACGGGAGAGTAAGGAATAATTTTTCCG  885

seq1  TATTGAGTTGGGACAGCCCCTTAAGCATAAGACCTCGGTGCTCTGTGTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTTGGGACAGCCCCTTAAGCATAAGACCTCGGTGCTCTGTGTTG  935

seq1  CTTGTGTTCATAGCCAACAGGTTATACTGGTTCCTTCCATGTAGCAAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTCATAGCCAACAGGTTATACTGGTTCCTTCCATGTAGCAAACT  985

seq1  GGTGTCTGAGTGACCATGCAACTATCTCCACGTTCCTTCACTCTTCACCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGAGTGACCATGCAACTATCTCCACGTTCCTTCACTCTTCACCC  1035

seq1  TCCCTGGTCCCATTTCCTCTCCAGTTCCCAGGCCTTTTAATGGAGGACAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTCCCATTTCCTCTCCAGTTCCCAGGCCTTTTAATGGAGGACAT  1085

seq1  CTCTAATGTTTTTCTCATCGGTGTTGGTGTTGAGACTCACTGACTGTATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGTTTTTCTCATCGGTGTTGGTGTTGAGACTCACTGACTGTATG  1135

seq1  CTTGAATTC  1157
      |||||||||
seq2  CTTGAATTC  1144

seq1: chr1_51048306_51049270
seq2: B6Ng01-004O04.g_68_1017

seq1  GAATTCCTGCCCACATTTGAAGGGAAATTACACATGCACGTATAATCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCCACATTTGAAGGGAAATTACACATGCACGTATAATCCCC  50

seq1  TAGTAATGTAGGAGATATTGTCTTATTCCATACTTAGAGAAAGGTGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGTAGGAGATATTGTCTTATTCCATACTTAGAGAAAGGTGAGTG  100

seq1  CCAGCTTAAATTTAAAATATACAAAATAAAGGCCATTATGCATTTGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTAAATTTAAAATATACAAAATAAAGGCCATTATGCATTTGGACA  150

seq1  TCACAATGCAGAGTTGAGAGGTTTTATGGAAGATAAAAGGCTACAGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGCAGAGTTGAGAGGTTTTATGGAAGATAAAAGGCTACAGATGA  200

seq1  GAGAGCAGCCTCTGAAAATAGGGAAAAAAGCTCAGCAATTAACCTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGCCTCTGAAAATAGGGAAAAAAGCTCAGCAATTAACCTTAAGA  250

seq1  TGAAGTAGCTTTCCTTTCTCACCATGATCAACTCATACTTAAGTCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGCTTTCCTTTCTCACCATGATCAACTCATACTTAAGTCTTTAA  300

seq1  ATGGAAAATGACTTGTAGTTAACCTTTATGATTCAGAAAACCATTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATGACTTGTAGTTAACCTTTATGATTCAGAAAACCATTTAATT  350

seq1  GTAATTATAGCTAATCCAATTAAAGATGGATTATAATAACTGCTGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATAGCTAATCCAATTAAAGATGGATTATAATAACTGCTGAATTA  400

seq1  ATAGGTCATGAAACACTGAGTTTAATTATGAGTGTATTTATTTTGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCATGAAACACTGAGTTTAATTATGAGTGTATTTATTTTGGAAAA  450

seq1  ATTACTCTTAAGGTATTATGTAATTTTAAAAATTATTTTGAGCTCAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTTAAGGTATTATGTAATTTTAAAAATTATTTTGAGCTCAAAAT  500

seq1  TATATAGGTTGTGATTCATAAGTAAAAGAAGAAGAAGGAGTGAATACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGGTTGTGATTCATAAGTAAAAGAAGAAGAAGGAGTGAATACCCC  550

seq1  AGAGCTCTTCAAGGCATAAGGGCAGAACAGGAAACAGGACAATATGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTTCAAGGCATAAGGGCAGAACAGGAAACAGGACAATATGAGTG  600

seq1  ACAAAGCTTGATTTTAAATAACTAAACTCAATTTTTTTAAATTCACAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTTGATTTTAAATAACTAAACTCAATTTTTTTAAATTCACAACC  650

seq1  TTGAAAAAATACTATTAGTAGTTTAGTTTCATCCCTAGAAACATCAAAAT  700
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-AAAAATACTATTAGTAGTTTAGTTTCATCCCTAGAAACATCAAAAT  699

seq1  TATTGTTAAACTTTATATTCTAATGAGATTAGTAGAATTAAAAGAAAATT  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATTGTTAAACTTTATATTCTAATGAGATTAGTAGAATTAAAAG-AAATT  748

seq1  TTACTTTTAAAACCACAAATCGTCACATCGCA-CACTGTAAC-TCTGAAA  798
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  TTACTTTTAAAACCACAAATCGTCACATCGCACCACTGTAACTTCTGAAA  798

seq1  CTCAGACACTTGGGTCTTTAGTTGCATATTTAGAGGGAAATGTAACTGTG  848
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACCCTTGGGTCTTTAGTTGCATATTTAGAGGGAAATGTAACTGTG  848

seq1  TTTAAAGTAGAACAAATGACCAGTGTTAACATCAATAGATATATTTTAAC  898
      ||| ||||||||| ||||||||||||  ||||||  ||| |||||   ||
seq2  TTT-AAGTAGAAC-AATGACCAGTGT--ACATCATAAGAAATATT---AC  891

seq1  ATTAGTGTTTTGTTCTTTTTCTACATTTAAAAGTTATGGAAACAGACATG  948
      ||    | |||| |||||||||  |||  ||||||   ||||||||| ||
seq2  AT---AGGTTTG-TCTTTTTCTCAATT--AAAGTT---GAAACAGAC-TG  931

seq1  AGTAGATATAA--AACAAA  965
      |||||||||||  ||||||
seq2  AGTAGATATAAACAACAAA  950