BAC Information

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BAC

Clone NameB6Ng01-005D23
Chromosome1 (Build37)
Map Location 66,980,351 - 67,157,790
singlet/doubletdoublet
Overlap geneMyl1, LOC100043192, Lancl1
Upstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
Downstream geneCps1, Kif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D23.bB6Ng01-005D23.g
ACCDH842435DH842436
length1,178704
definitionDH842435|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D23, 5' end.DH842436|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,980,351 - 66,981,549)(67,157,098 - 67,157,790)
sequence
gaattcacttctatcctacaatcccatttccacagaaactgggcggattt
gacaattaaggcagcttttatcatccgcttcatttttcaaattgcacact
tcagacttatcgaatctccctctagggttttaattagcaaattagttttc
taaaacctagatccttttgtgactatatcatatacgccgatctttcctat
tgtaccgagttcatcttatttggaaatcagtggctataaggacttattaa
agctctaattttaatttccttaaagctttgattactgactctaaccaagg
gcttcagttatgcaggtttatatttagagtgattgaaagcaatttatatt
tagggtagcagcaccagtgtggataattagacagcacttagctcatccca
agggacttggttttctcacttgtcacctctgagtccgcacatatgaatgg
ctacagcttttaaacttaccctcctgttgctccttagagaactcgatctg
ttggaaagaaattaatcataaagaatattttaaccagaaacaagtgtcct
gatttatgagcacgtccagctcattcctcgagttctcttcagaataagct
ccaggagtcagcccacttattctgagttcaggcatggcataggcacgaac
agtctgagtcacaaaggaacatgctgtggagttagggaaatctcaaagac
agacagagctcttcctagggtagagctgctcagtcacttaccggcaatct
ggtcagcactgaaggactgtggtggcaagagagagagagaaagagaggac
tttcaaatgcattgacagaaagagtgctctttgctctgaggcctttaggg
aaccaggtaggtacaatggcacaggaagagtgtgtgagggaaattttgaa
cttaggagcataaatctattgcgaaagatacttggaaatcctttcctctt
tatcttaaccatgtaaatattaaaaattctaaacagaaagaacacttcct
agaaatgcatagctgtctatatttagcatttgtcagatagtatacattta
actgcaattaaattacatattaaaccacccttaaagtcttttctgtctat
tacgtattttaactagtatattgacactgagaatcgagcagtttgcttac
ctttagctactgtttactgattctattt
gaattcattcccttgctgttatttagcctgagttatctaacatagatgat
agataggtaggtaggtagatagatagatagatagatagatagatagatag
atagatagatagatagtaggtaagaaggtatgtagacagatagatagatt
tcacctttccttgagaaaactgagatcatgagatatcaatgatcatggag
aaatactctgtatcctaaccatgatctccccagatctgtgtgtaaaggag
gaacggctaccgttgtacatttcagaatggagatagcggtgtcatagata
taatataaagtcagtccatagatgcttttttttgactgatagtgagtagg
caaacacattatactagtcaacaagtagaggttagctttctcgtagcttc
attctcctcttagccaagtcaattagtgagcatagagcctagcttttcta
aaagctgaacaaatctactaggcgacaattgcagtaatacaaaagtttca
gagataatgtctatcacatcctgtgatctaaggagtaaacataattttat
atagaaaatgggcaaatgtgtaacaaaagccattactgttactatacctg
aaaaaatcttggaatttgactctgtgagctatatggatgggcagtagttt
agatgagtctagaagagaagactagaaaaggcattacagggatttctggt
ggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66980351_66981549
seq2: B6Ng01-005D23.b_48_1225

seq1  GAATTCACTTCTATCCTACAATCCCATTTCCACAGAAACTGGGCGGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTATCCTACAATCCCATTTCCACAGAAACTGGGCGGATTT  50

seq1  GACAATTAAGGCAGCTTTTATCATCCGCTTCATTTTTCAAATTGCACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTAAGGCAGCTTTTATCATCCGCTTCATTTTTCAAATTGCACACT  100

seq1  TCAGACTTATCGAATCTCCCTCTAGGGTTTTAATTAGCAAATTAGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTATCGAATCTCCCTCTAGGGTTTTAATTAGCAAATTAGTTTTC  150

seq1  TAAAACCTAGATCCTTTTGTGACTATATCATATACGCCGATCTTTCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTAGATCCTTTTGTGACTATATCATATACGCCGATCTTTCCTAT  200

seq1  TGTACCGAGTTCATCTTATTTGGAAATCAGTGGCTATAAGGACTTATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCGAGTTCATCTTATTTGGAAATCAGTGGCTATAAGGACTTATTAA  250

seq1  AGCTCTAATTTTAATTTCCTTAAAGCTTTGATTACTGACTCTAACCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAATTTTAATTTCCTTAAAGCTTTGATTACTGACTCTAACCAAGG  300

seq1  GCTTCAGTTATGCAGGTTTATATTTAGAGTGATTGAAAGCAATTTATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTTATGCAGGTTTATATTTAGAGTGATTGAAAGCAATTTATATT  350

seq1  TAGGGTAGCAGCACCAGTGTGGATAATTAGACAGCACTTAGCTCATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGCAGCACCAGTGTGGATAATTAGACAGCACTTAGCTCATCCCA  400

seq1  AGGGACTTGGTTTTCTCACTTGTCACCTCTGAGTCCGCACATATGAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTGGTTTTCTCACTTGTCACCTCTGAGTCCGCACATATGAATGG  450

seq1  CTACAGCTTTTAAACTTACCCTCCTGTTGCTCCTTAGAGAACTCGATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCTTTTAAACTTACCCTCCTGTTGCTCCTTAGAGAACTCGATCTG  500

seq1  TTGGAAAGAAATTAATCATAAAGAATATTTTAACCAGAAACAAGTGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGAAATTAATCATAAAGAATATTTTAACCAGAAACAAGTGTCCT  550

seq1  GATTTATGAGCACGTCCAGCTCATTCCTCGAGTTCTCTTCAGAATAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATGAGCACGTCCAGCTCATTCCTCGAGTTCTCTTCAGAATAAGCT  600

seq1  CCAGGAGTCAGCCCACTTATTCTGAGTTCAGGCATGGCATAGGCACGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTCAGCCCACTTATTCTGAGTTCAGGCATGGCATAGGCACGAAC  650

seq1  AGTCTGAGTCACAAAGGAACATGCTGTGGAGTTAGGGAAATCTCAAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGTCACAAAGGAACATGCTGTGGAGTTAGGGAAATCTCAAAGAC  700

seq1  AGACAGAGCTCTTCCTAGGGTAGAGCTGCTCAGTCACTTACCGGCAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGCTCTTCCTAGGGTAGAGCTGCTCAGTCACTTACCGGCAATCT  750

seq1  GGTCAGCACTGAAGGACTGTGGTGGCAAGAGAGAGAGAGAAAGAGAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCACTGAAGGACTGTGGTGGCAAGAGAGAGAGAGAAAGAGAGGAC  800

seq1  TTTCAAATGCATTGACAGAAAGAGTGCTCTTTGCTCTGAGGCCTTTAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGCATTGACAGAAAGAGTGCTCTTTGCTCTGAGGCCTTTAGGG  850

seq1  AACCAGGTAGGTACAATGGCACAGGAAGAGTGTGTGAGGGAAATTTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGTAGGTACAATGGCACAGGAAGAGTGTGTGAGGGAAATTTTGAA  900

seq1  CCTAGGAGCATAAAATCTATTGCGAAAGATAACTTGGAAATCCTTT-CTC  949
      | ||||||||| |||||||||||||||||| ||||||||||||||| |||
seq2  CTTAGGAGCAT-AAATCTATTGCGAAAGAT-ACTTGGAAATCCTTTCCTC  948

seq1  TATATCTTAACCATGTAAAATATTAAAAAATTCTAAACAGAAAGAACACT  999
      | |||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  TTTATCTTAACCATGT-AAATATT-AAAAATTCTAAACAGAAAGAACACT  996

seq1  TCCTAGAAAATGCCATAGCTGTCTATATTTAGCATATGTCAGATAAGGTA  1049
      |||||| ||||| |||||||||||||||||||||| |||||||||  |||
seq2  TCCTAG-AAATG-CATAGCTGTCTATATTTAGCATTTGTCAGATA--GTA  1042

seq1  TACATTTAAAACTGCAAATAAAATTACATATAAAAACCACCCTTTAAAAG  1099
      |||||||  |||||| ||| |||||||||||  |||||||||||  ||||
seq2  TACATTT--AACTGC-AATTAAATTACATAT-TAAACCACCCTT--AAAG  1086

seq1  TC-TTTCTGTCTAATTAACGTATTTTATACTAGTATA-TGACACTGAAGA  1147
      || ||||||||||  | |||||||||| ||||||||| |||||||| |||
seq2  TCTTTTCTGTCTA--TTACGTATTTTA-ACTAGTATATTGACACTG-AGA  1132

seq1  ATCAGAGGCAGTTTGCTTAACTTTAGCTACTGGTTATCACTGAATTCTAT  1197
      ||| || |||||||||||| |||||||||||| ||   |||| |||||||
seq2  ATC-GA-GCAGTTTGCTTACCTTTAGCTACTGTTT---ACTG-ATTCTAT  1176

seq1  TT  1199
      ||
seq2  TT  1178

seq1: chr1_67157098_67157790
seq2: B6Ng01-005D23.g_67_770 (reverse)

seq1  TTCCACCAG-AATCCCTGT-ATGCCTTTTCTAGTCTTCTCTTCTAGACTC  48
      | ||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  TCCCACCAGAAATCCCTGTAATGCCTTTTCTAGTCTTCTCTTCTAGACTC  50

seq1  TTCT-AACTACTGCCCAT-CATATAGCTC-CAGAGTC-AATTCC-AGA-T  92
       ||| ||||||||||||| |||||||||| ||||||| |||||| ||| |
seq2  ATCTAAACTACTGCCCATCCATATAGCTCACAGAGTCAAATTCCAAGATT  100

seq1  TTTTCAGGTATAGTAACAGTAATGGC-TTTGTTACCCA-TTGCCCATTTT  140
      |||||||||||||||||||||||||| |||||||| || |||||||||||
seq2  TTTTCAGGTATAGTAACAGTAATGGCTTTTGTTACACATTTGCCCATTTT  150

seq1  CTATAT-AAATTATGTTTACTCCTTAGATCACAGGATGTGATAGACATTA  189
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAAAATTATGTTTACTCCTTAGATCACAGGATGTGATAGACATTA  200

seq1  TCTCTGAAACTTTTGTATTACTGCAATTGTCGCCTAGTAGATTTGTTCAG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAACTTTTGTATTACTGCAATTGTCGCCTAGTAGATTTGTTCAG  250

seq1  CTTTTAGAAAAGCTAGGCTCTATGCTCACTAATTGACTTGGCTAAGAGGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAAAAGCTAGGCTCTATGCTCACTAATTGACTTGGCTAAGAGGA  300

seq1  GAATGAAGCTACGAGAAAGCTAACCTCTACTTGTTGACTAGTATAATGTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGCTACGAGAAAGCTAACCTCTACTTGTTGACTAGTATAATGTG  350

seq1  TTTGCCTACTCACTATCAGTCAAAAAAAAGCATCTATGGACTGACTTTAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTACTCACTATCAGTCAAAAAAAAGCATCTATGGACTGACTTTAT  400

seq1  ATTATATCTATGACACCGCTATCTCCATTCTGAAATGTACAACGGTAGCC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCTATGACACCGCTATCTCCATTCTGAAATGTACAACGGTAGCC  450

seq1  GTTCCTCCTTTACACACAGATCTGGGGAGATCATGGTTAGGATACAGAGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCTTTACACACAGATCTGGGGAGATCATGGTTAGGATACAGAGT  500

seq1  ATTTCTCCATGATCATTGATATCTCATGATCTCAGTTTTCTCAAGGAAAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCATGATCATTGATATCTCATGATCTCAGTTTTCTCAAGGAAAG  550

seq1  GTGAAATCTATCTATCTGTCTACATACCTTCTTACCTACTATCTATCTAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTATCTATCTGTCTACATACCTTCTTACCTACTATCTATCTAT  600

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTACCTACCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTACCTACCT  650

seq1  ATCTATCATCTATGTTAGATAACTCAGGCTAAATAACAGCAAGGGAATGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCATCTATGTTAGATAACTCAGGCTAAATAACAGCAAGGGAATGA  700

seq1  ATTC  693
      ||||
seq2  ATTC  704