BAC Information

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BAC

Clone NameB6Ng01-006H21
Chromosome10 (Build37)1 (Build37)
Map Location 104,053,903 - 104,054,363179,750,068 - 179,751,066
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006H21.bB6Ng01-006H21.g
ACCDH843337DH843338
length913989
definitionDH843337|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H21, 5' end.DH843338|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(179,750,068 - 179,751,066)
sequence
gaattctcacctgaagaataccgattggcatcgaagtacctgaaaaaatg
ttcaacatccttaatgatcagggaaatgcaaatcaaaacaaccctgagat
tcacctcacaccagtcagaatgactaagatcaaaaattcaggtgacagca
gatgctggtgaggatgtggagaaagagaacactcctccattgttggtggg
attgcaagcttgtacaaccactctggaaatcagtctggcagtttcttaga
aaattggacatagtactactggaggatccatcaatatctctcctaggcat
atatccagaagatgtcccaaccggtaagaaggacacatgctccagtatgt
tcatagcagccttatttataatagccagaagctggaaagaacccagatgc
ccctcaacagaggaatggatacataaaatgtggtacatttacacaatgga
gtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaat
gtatggacctggagggcatcatcctgagtgaggtaacccaatcacaaagg
aactcacacaatatgtactcactgataagtggatattagcccaaaactta
ggatacccaagatataagatacaatttgctaaacgcatgaaactcaagaa
gaatgaagaccaacgtgtgtacactttgccccttcttagaattgggaaca
aaatacccatgaaaggagttacagagacaaagttttgagctgtgacgaaa
ggatggtccatctagagactgccatatccagggatccaccccataagcag
cttccaaatgctaacaccattgcacacactagcaagattttgctgaaagg
acccagatatagctctctcttgtgagactatgctggagcctagcaaacac
agaagtggatgct
gaattctgattcacagtaaggtgagggaatgaagaaaggacaaacacatt
tggtgaagctaggggttgggtgggttgtacactcaaatggagtcacatct
actaatgtaccaacctcgcacctgacgtgttcattatgcacaacacagga
gaagggtttctagtctggttaggagatctctgtaggtcagcagcctcagg
ctgtaaacaagagaggaggaagctgcagttagttgccatgcttttcacac
agtgattaattacctgtgaacactcacatagaccagaggaagaccatttt
gccagctatgagccttactcgtatggagacaagctctgctaattgcctgc
gcttcaaataccctggtttttgtcatgactgtgcccatttctgcagtgca
caatcagtaggggctttctatgttccctacaatgtagaacaacaacaaca
aaagaagggactattttatgtgtttatattgcctaattattgagaagaaa
atagtaactgtcattcaacaattataagtttacaacagatataaattctt
ctcagggataaacctcagtctctgtattacttttaaaaatgtttaacacc
atatctccttcatttctctctttttaaaaaactttatgagtatatgagta
tttatctgcatataactatgtgtaccacctgtgcagtagccttggaagcc
agaagaaggctttgggactgaaagctggagtcacaggcagttaattgtga
gctgtcataaggatgcagaggatccaacctgggtcttctgcaagagcatc
taaggctcttaatgggctgagccatctctctagccccatagtgatttctc
taatgctgtctacttagagtgataatgtataattcaagtgtatttaggtg
cccctgctgatggacatatagcttcttacaccacgaacactctgtgagat
gctcttctccatggatctctgcagcttttgttgtggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-006H21.b_44_512 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||| ||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTATGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  ATAAATAAGGCTGCTATGAACATACTGGAGCATGTGTCCTTCTTACCGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| ||||||||||||||||||| || |||| ||||| |||||||||| 
seq2  TGGGACATCTTCTGGATATATGCCTAGGAGAGATATTGATGGATCCTCCA  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||| |  ||| ||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTAAGAAACTGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTT-CTCTTTC  299

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  TCCACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGTCA  349

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGT-GAATCTCAGGGTTGTTTTGATTTGCATTTCC  398

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||| |||||||||||||||||||||||||||| ||||  ||||| |||
seq2  CTGATCATTAAGGATGTTGAACATTTTTTCAGGTACTTCGATGCCAATCG  448

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||| ||||||||||||||
seq2  GTATTCTTCAGGTGAGAATTC  469

seq1: chr1_179750068_179751066
seq2: B6Ng01-006H21.g_64_1052

seq1  GAATTCTGATTCACAGTAAGGTGAGGGAATGAAGAAAGGACAAACACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTCACAGTAAGGTGAGGGAATGAAGAAAGGACAAACACATT  50

seq1  TGGTGAAGCTAGGGGTTGGGTGGGTTGTACACTCAAATGGAGTCACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGCTAGGGGTTGGGTGGGTTGTACACTCAAATGGAGTCACATCT  100

seq1  ACTAATGTACCAACCTCGCACCTGACGTGTTCATTATGCACAACACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGTACCAACCTCGCACCTGACGTGTTCATTATGCACAACACAGGA  150

seq1  GAAGGGTTTCTAGTCTGGTTAGGAGATCTCTGTAGGTCAGCAGCCTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTTCTAGTCTGGTTAGGAGATCTCTGTAGGTCAGCAGCCTCAGG  200

seq1  CTGTAAACAAGAGAGGAGGAAGCTGCAGTTAGTTGCCATGCTTTTCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACAAGAGAGGAGGAAGCTGCAGTTAGTTGCCATGCTTTTCACAC  250

seq1  AGTGATTAATTACCTGTGAACACTCACATAGACCAGAGGAAGACCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTAATTACCTGTGAACACTCACATAGACCAGAGGAAGACCATTTT  300

seq1  GCCAGCTATGAGCCTTACTCGTATGGAGACAAGCTCTGCTAATTGCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTATGAGCCTTACTCGTATGGAGACAAGCTCTGCTAATTGCCTGC  350

seq1  GCTTCAAATACCCTGGTTTTTGTCATGACTGTGCCCATTTCTGCAGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAATACCCTGGTTTTTGTCATGACTGTGCCCATTTCTGCAGTGCA  400

seq1  CAATCAGTAGGGGCTTTCTATGTTCCCTACAATGTAGAACAACAACAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTAGGGGCTTTCTATGTTCCCTACAATGTAGAACAACAACAACA  450

seq1  AAAGAAGGGACTATTTTATGTGTTTATATTGCCTAATTATTGAGAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGGACTATTTTATGTGTTTATATTGCCTAATTATTGAGAAGAAA  500

seq1  ATAGTAACTGTCATTCAACAATTATAAGTTTACAACAGATATAAATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACTGTCATTCAACAATTATAAGTTTACAACAGATATAAATTCTT  550

seq1  CTCAGGGATAAACCTCAGTCTCTGTATTACTTTTAAAAATGTTTAACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGATAAACCTCAGTCTCTGTATTACTTTTAAAAATGTTTAACACC  600

seq1  ATATCTCCTTCATTTCTCTCTTTTTAAAAAACTTTATGAGTATATGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCTTCATTTCTCTCTTTTTAAAAAACTTTATGAGTATATGAGTA  650

seq1  TTTATCTGCATATAACTATGTGTACCACCTGTGCAGTAGCCTTGGAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGCATATAACTATGTGTACCACCTGTGCAGTAGCCTTGGAAGCC  700

seq1  AGAAGAAGGCTTTGGGACTGAAAGCTGGAGTCACAGGCAGTTAATTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGGCTTTGGGACTGAAAGCTGGAGTCACAGGCAGTTAATTGTGA  750

seq1  GCTGTCATAAGGATGCAGAGGATCCAACCTGGGTCTTCTGCAAGAGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATAAGGATGCAGAGGATCCAACCTGGGTCTTCTGCAAGAGCATC  800

seq1  TAAGGCTCTTAAT-GGCTGAGCCATCTCTCTAGCCCCATAGTTGATTTCT  849
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  TAAGGCTCTTAATGGGCTGAGCCATCTCTCTAGCCCCATAG-TGATTTCT  849

seq1  CTTAATGCTGTCTACTTAGAGTGATAATGTATTAATTCAAGTGTATTTAG  899
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  C-TAATGCTGTCTACTTAGAGTGATAATGTA-TAATTCAAGTGTATTTAG  897

seq1  GTGCCCCCTGCTGATGGACATATAGCTTCTTACAACCACGAACAACTCTG  949
      ||| ||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  GTG-CCCCTGCTGATGGACATATAGCTTCTTAC-ACCACGAAC-ACTCTG  944

seq1  TGAGGAATGCTCTTCTCCATGGATCTCTGCAGGCTTTTTGTTTGTGGAGG  999
      ||||  ||||||||||||||||||||||||| ||||||   |||||||||
seq2  TGAG--ATGCTCTTCTCCATGGATCTCTGCA-GCTTTT--GTTGTGGAGG  989