BAC Information

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BAC

Clone NameB6Ng01-006I17
Chromosome1 (Build37)
Map Location 69,910,382 - 70,071,096
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006I17.bB6Ng01-006I17.g
ACCDH843372DH843373
length1,169973
definitionDH843372|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I17, 5' end.DH843373|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,069,903 - 70,071,096)(69,910,382 - 69,911,366)
sequence
gaattcttcccaagtatcagttctttacagatagttaggcaaaaccaagt
gcagaaagacaagaaatcagatgatacagctaactttaaaagacaacaca
attatacagacagtgagttaagaggatggaatagatcctaatgaatgtgc
acagctgttgagaagagatgactcttgaaacatctgagggctttagagac
cctctcctgataaaaatcaatatctatgggatacaaacaggcagtgggta
ttaagaactatataggagttcaggtatctgaagtcatggtaggcagtaga
gagacagtcaaaaaatgtatgttgactgttggcatctctttaaaggcaat
ggaaacccaaaagttccagatactacaaaagacggaaagttctagaaagt
acatcttatgttctgtcaatcagcggtgatgataatataaagaaatattt
cattttgggttattcatagtagtgagacttctagagacaaaaagcaagga
ccaaattgacctacacaacactggcttctccccctgtatttgtgtggtaa
aacccatctatctttatatccaataacagtgcaagtttccctccattaga
attttcatgatgtgtgctttgaattccccattgtttctgacactgaacac
ttagtcccaatgatggcactatgtgagaagtatggccttgttgaaagaag
tatgtcactggaagaaaacatgtgtgtcgtttcaagttttctccctctcc
ttcccgctatagtttatcatgtgatgtctcaactatttcctgccaccatg
attactgcctactgccaaaattccctagtgtcaaggactcatgccagtgg
gctttttaatcatagcaataagaaactaattaatacacataactagtaca
ttaaattttacttcatagtaggtaaatttaacctagagctatcaatctta
tatcagtatctttagtaatcatacacggggcagacttcatagcttgtctg
atagatccaggcctttcaaataagcacacagaatatgttctcatgcaaat
ttacttaaaagtgatagggctccttttagacactcccggcctcgtttcat
ttctatcaacattacagctggcctattgttaaccagcctctctccttgtg
gattccacccatccagact
gaattctatactggcagtgtgtgagaattctatttgctccccaaacccca
aaagagaattggtagttttttctactttagcctttactcgatttgatagt
gatgtcttgtggttttgatatgcgatttgccaagagcaggtgataataaa
tgcaatattttgtgcttcttgtcccctttgcatttttggtatcagtattg
ccctttcatttaaagccatttgcctaattttgattaggtttttaattttg
ttattggattttatgattttttttctctttgagatactagacactttgta
tattgtatttcccttcagactgtggttttacattttacttcattactatg
atcttttaagagatttgattaaaagacttatatgcatatctgtgtgctgt
ggtatttgtatctgggttcttccctcagatgtgttggttatttatagatt
ctttgctttttcacataaaatttacaatcaatagaaaaaacacaagtgag
gtctagactaataagggcttgaacatagatctcgctagtgcatttctgtg
tgtatgtatatacatacatcttatggagggagaggtcgatgccttggtaa
ctctgagtcttctttctgcatggcactctatatagttatttcagtctatc
taatagtaaatatttatgaaacatcttgaaatgtgcacttttcacattga
cttaacatctatgtgcttcatgtaatgaagggcggccctcctgactgttg
tcccaggcagggccctgtcattgtgattttgctttagctgcagttggtgc
ttatatgatatgctactatactttatgtttactgtaataatgttagagta
gttgatgggtttatcttcataatacttttgggataggctttgttccttcc
catgtgggaattagcaactttttcaagaaaatgttgttccatttaaggat
tgttttcattttcgaatctttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_70069903_70071096
seq2: B6Ng01-006I17.b_28_1196 (reverse)

seq1  AGTCTTTGATGGGTGGAATTCACACAAAGGGAGAAGAGCATAGTTTTAAC  50
      |||| | |||||||||||| |||    | |||| ||||  | |  |||||
seq2  AGTC-TGGATGGGTGGAATCCAC----AAGGAG-AGAGGCTGG--TTAAC  42

seq1  AAATAAGCCAGACTGTAAATGTGTTGGATAAGAGAAATGAGACAGAGACG  100
       |||| ||||| ||||||   |||||    | |||||||| || ||| | 
seq2  -AATAGGCCAG-CTGTAA---TGTTG----ATAGAAATGAAAC-GAGGCC  82

seq1  AGGAGTGCTTAAAAAGGAGACACTATCACTTTTTAAGTAAAATTTGCATG  150
       |||||| |  |||||||| | ||||||| |||||||| |||||||||||
seq2  GGGAGTG-TCTAAAAGGAG-CCCTATCAC-TTTTAAGT-AAATTTGCATG  128

seq1  AGAACATTATTCTGTGTGCTTAATTTGAAAAGCCCTGAATCTATCAGACC  200
      |||||| |||||||||||||| ||||| |||| |||| ||||||||||| 
seq2  AGAACA-TATTCTGTGTGCTT-ATTTG-AAAGGCCTGGATCTATCAGACA  175

seq1  AGCTATGGAGTCTGCGCCGTGTATGATTACTAAAGATACTGATATAAGAT  250
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCTATGAAGTCTGCCCCGTGTATGATTACTAAAGATACTGATATAAGAT  225

seq1  TGATAGCTCTAGGTTAAATTTACCTACTATGAAGTAAAATTTAATGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTCTAGGTTAAATTTACCTACTATGAAGTAAAATTTAATGTACT  275

seq1  AGTTATGTGTATTAATTAGTTTCTTATTGCTATGATTAAAAAGCCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTGTATTAATTAGTTTCTTATTGCTATGATTAAAAAGCCCACTG  325

seq1  GCATGAGTCCTTGACACTAGGGAATTTTGGCAGTAGGCAGTAATCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGTCCTTGACACTAGGGAATTTTGGCAGTAGGCAGTAATCATGGT  375

seq1  GGCAGGAAATAGTTGAGACATCACATGATAAACTATAGCGGGAAGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAATAGTTGAGACATCACATGATAAACTATAGCGGGAAGGAGAG  425

seq1  GGAGAAAACTTGAAACGACACACATGTTTTCTTCCAGTGACATACTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAACTTGAAACGACACACATGTTTTCTTCCAGTGACATACTTCTT  475

seq1  TCAACAAGGCCATACTTCTCACATAGTGCCATCATTGGGACTAAGTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGGCCATACTTCTCACATAGTGCCATCATTGGGACTAAGTGTTC  525

seq1  AGTGTCAGAAACAATGGGGAATTCAAAGCACACATCATGAAAATTCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGAAACAATGGGGAATTCAAAGCACACATCATGAAAATTCTAAT  575

seq1  GGAGGGAAACTTGCACTGTTATTGGATATAAAGATAGATGGGTTTTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAACTTGCACTGTTATTGGATATAAAGATAGATGGGTTTTACCA  625

seq1  CACAAATACAGGGGGAGAAGCCAGTGTTGTGTAGGTCAATTTGGTCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATACAGGGGGAGAAGCCAGTGTTGTGTAGGTCAATTTGGTCCTTG  675

seq1  CTTTTTGTCTCTAGAAGTCTCACTACTATGAATAACCCAAAATGAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCTCTAGAAGTCTCACTACTATGAATAACCCAAAATGAAATAT  725

seq1  TTCTTTATATTATCATCACCGCTGATTGACAGAACATAAGATGTACTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATATTATCATCACCGCTGATTGACAGAACATAAGATGTACTTTC  775

seq1  TAGAACTTTCCGTCTTTTGTAGTATCTGGAACTTTTGGGTTTCCATTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTTCCGTCTTTTGTAGTATCTGGAACTTTTGGGTTTCCATTGCC  825

seq1  TTTAAAGAGATGCCAACAGTCAACATACATTTTTTGACTGTCTCTCTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAGATGCCAACAGTCAACATACATTTTTTGACTGTCTCTCTACT  875

seq1  GCCTACCATGACTTCAGATACCTGAACTCCTATATAGTTCTTAATACCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCATGACTTCAGATACCTGAACTCCTATATAGTTCTTAATACCCA  925

seq1  CTGCCTGTTTGTATCCCATAGATATTGATTTTTATCAGGAGAGGGTCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTTTGTATCCCATAGATATTGATTTTTATCAGGAGAGGGTCTCT  975

seq1  AAAGCCCTCAGATGTTTCAAGAGTCATCTCTTCTCAACAGCTGTGCACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTCAGATGTTTCAAGAGTCATCTCTTCTCAACAGCTGTGCACAT  1025

seq1  TCATTAGGATCTATTCCATCCTCTTAACTCACTGTCTGTATAATTGTGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGGATCTATTCCATCCTCTTAACTCACTGTCTGTATAATTGTGTT  1075

seq1  GTCTTTTAAAGTTAGCTGTATCATCTGATTTCTTGTCTTTCTGCACTTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTAAAGTTAGCTGTATCATCTGATTTCTTGTCTTTCTGCACTTGG  1125

seq1  TTTTGCCTAACTATCTGTAAAGAACTGATACTTGGGAAGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTAACTATCTGTAAAGAACTGATACTTGGGAAGAATTC  1169

seq1: chr1_69910382_69911366
seq2: B6Ng01-006I17.g_64_1036

seq1  GAATTCTATACTGGCAGTGTGTGAGAATTCTATTTGCTCCCCAAACCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACTGGCAGTGTGTGAGAATTCTATTTGCTCCCCAAACCCCA  50

seq1  AAAGAGAATTGGTAGTTTTTTCTACTTTAGCCTTTACTCGATTTGATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAATTGGTAGTTTTTTCTACTTTAGCCTTTACTCGATTTGATAGT  100

seq1  GATGTCTTGTGGTTTTGATATGCGATTTGCCAAGAGCAGGTGATAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTGTGGTTTTGATATGCGATTTGCCAAGAGCAGGTGATAATAAA  150

seq1  TGCAATATTTTGTGCTTCTTGTCCCCTTTGCATTTTTGGTATCAGTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATTTTGTGCTTCTTGTCCCCTTTGCATTTTTGGTATCAGTATTG  200

seq1  CCCTTTCATTTAAAGCCATTTGCCTAATTTTGATTAGGTTTTTAATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCATTTAAAGCCATTTGCCTAATTTTGATTAGGTTTTTAATTTTG  250

seq1  TTATTGGATTTTATGATTTTTTTTCTCTTTGAGATACTAGACACTTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGATTTTATGATTTTTTTTCTCTTTGAGATACTAGACACTTTGTA  300

seq1  TATTGTATTTCCCTTCAGACTGTGGTTTTACATTTTACTTCATTACTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATTTCCCTTCAGACTGTGGTTTTACATTTTACTTCATTACTATG  350

seq1  ATCTTTTAAGAGATTTGATTAAAAGACTTATATGCATATCTGTGTGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAAGAGATTTGATTAAAAGACTTATATGCATATCTGTGTGCTGT  400

seq1  GGTATTTGTATCTGGGTTCTTCCCTCAGATGTGTTGGTTATTTATAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGTATCTGGGTTCTTCCCTCAGATGTGTTGGTTATTTATAGATT  450

seq1  CTTTGCTTTTTCACATAAAATTTACAATCAATAGAAAAAACACAAGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTTTTCACATAAAATTTACAATCAATAGAAAAAACACAAGTGAG  500

seq1  GTCTAGACTAATAAGGGCTTGAACATAGATCTCGCTAGTGCATTTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGACTAATAAGGGCTTGAACATAGATCTCGCTAGTGCATTTCTGTG  550

seq1  TGTATGTATATACATACATCTTATGGAGGGAGAGGTCGATGCCTTGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATATACATACATCTTATGGAGGGAGAGGTCGATGCCTTGGTAA  600

seq1  CTCTGAGTCTTCTTTCTGCATGGCACTCTATATAGTTATTTCAGTCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTCTTCTTTCTGCATGGCACTCTATATAGTTATTTCAGTCTATC  650

seq1  TAATAGTAAATATTTATGAAACATCTTGAAATGTGCACTTTTCACATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTAAATATTTATGAAACATCTTGAAATGTGCACTTTTCACATTGA  700

seq1  CTTAACATCTATGTGCTTCATGTAATGAAGGGCGGCCCTCCTGACTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACATCTATGTGCTTCATGTAATGAAGGGCGGCCCTCCTGACTGTTG  750

seq1  TCCCAGGCAGGG-CCTGTCATTGTGATTTTGCTTTAGCTGCAGTTGGTGC  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCAGGGCCCTGTCATTGTGATTTTGCTTTAGCTGCAGTTGGTGC  800

seq1  TTATATGATATGCTACTATACTTTATGTTTACTGTTAATAATGTTTAGAG  849
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  TTATATGATATGCTACTATACTTTATGTTTACTG-TAATAATG-TTAGAG  848

seq1  TAGTTGATGGGTTTTATCTTCATAATACTTTTGGGATTAGGCTTTGTTTC  899
      ||||||||||| |||||||||||||||||||||||| ||||||||| |||
seq2  TAGTTGATGGG-TTTATCTTCATAATACTTTTGGGA-TAGGCTTTG-TTC  895

seq1  CTTCCCATGGTGGGAATTTAAGCAACTTTTTCTAAGGATAAATGTTGTTC  949
      |||||||| |||||||||  |||||||||||| |||   |||||||||||
seq2  CTTCCCAT-GTGGGAATT--AGCAACTTTTTC-AAG--AAAATGTTGTTC  939

seq1  CATTTAGAGGATTGTTTTCTATTTCAGAATCTTTAC  985
      |||||| |||||||||||| ||||  ||||||||||
seq2  CATTTA-AGGATTGTTTTC-ATTTTCGAATCTTTAC  973